# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_26 - 146 UPF0020 PF01170.13 180 0.00079 11.9 0.0 1 1 1.1e-05 0.001 11.4 0.0 27 68 82 112 78 138 0.70 # 17866 # 18303 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 1_22 - 965 cobW PF02492.14 178 0.00082 11.7 0.0 1 1 1.7e-05 0.0016 10.7 0.0 5 38 209 241 206 292 0.68 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 3_32 - 394 MipZ PF09140.6 261 5.7e-06 18.4 0.0 1 2 0.0026 0.25 3.2 0.0 3 50 103 155 101 185 0.73 # 22506 # 23687 # -1 # ID=3_32;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 3_32 - 394 MipZ PF09140.6 261 5.7e-06 18.4 0.0 2 2 2.7e-06 0.00026 12.9 0.0 87 136 225 274 212 297 0.87 # 22506 # 23687 # -1 # ID=3_32;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 3_18 - 185 SSB PF00436.20 104 4.5e-43 138.3 0.5 1 1 5.7e-45 5.4e-43 138.0 0.5 1 100 6 109 6 113 0.95 # 13190 # 13744 # -1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.596 1_9 - 864 DUF87 PF01935.12 229 2.4e-05 17.1 0.0 1 1 1.8e-06 8.5e-05 15.3 0.0 26 213 477 655 474 670 0.64 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_22 - 965 DUF87 PF01935.12 229 0.00024 13.8 0.1 1 1 2.5e-05 0.0012 11.5 0.0 11 57 195 237 180 253 0.82 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_22 - 965 AAA_22 PF13401.1 131 0.0002 14.4 0.0 1 2 2.1e-05 0.002 11.1 0.0 8 31 208 231 202 344 0.80 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_22 - 965 AAA_22 PF13401.1 131 0.0002 14.4 0.0 2 2 0.076 7.2 -0.4 0.0 88 100 780 796 697 818 0.59 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 3_26 - 146 N6_N4_Mtase PF01555.13 231 1.1e-25 83.3 0.0 1 2 0.00035 0.033 6.4 0.0 72 114 6 44 1 59 0.79 # 17866 # 18303 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 3_26 - 146 N6_N4_Mtase PF01555.13 231 1.1e-25 83.3 0.0 2 2 3.6e-25 3.4e-23 75.1 0.0 169 228 61 120 52 123 0.92 # 17866 # 18303 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 1_22 - 965 AAA_17 PF13207.1 121 0.00097 12.8 0.2 1 1 5.2e-05 0.005 10.5 0.0 3 49 208 259 206 363 0.73 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_22 - 965 MobB PF03205.9 140 0.0011 11.6 0.0 1 1 2.7e-05 0.0025 10.3 0.0 5 33 209 237 206 243 0.86 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_22 - 965 Arch_ATPase PF01637.13 234 6.3e-05 15.6 0.0 1 1 1.7e-06 0.00016 14.2 0.0 27 75 211 253 203 329 0.84 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_22 - 965 AAA_16 PF13191.1 185 5.8e-06 19.2 1.4 1 2 4.2e-06 0.0002 14.2 0.0 22 56 202 236 198 264 0.88 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_22 - 965 AAA_16 PF13191.1 185 5.8e-06 19.2 1.4 2 2 0.045 2.1 1.1 1.6 88 138 860 917 768 946 0.65 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_9 - 864 AAA_16 PF13191.1 185 0.00014 14.7 0.0 1 1 1.4e-05 0.00064 12.6 0.0 26 56 476 507 461 595 0.86 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 2_9 - 4435 adh_short PF00106.20 167 1.4e-24 79.7 0.0 1 1 3.6e-26 3.4e-24 78.5 0.0 2 166 2311 2483 2310 2484 0.90 # 14931 # 28235 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.404 1_37 - 149 AAA_13 PF13166.1 712 0.0015 9.8 8.2 1 1 1.9e-05 0.0018 9.6 8.2 92 185 40 132 2 146 0.59 # 30854 # 31300 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.604 3_32 - 394 CbiA PF01656.18 195 2.4e-18 59.1 0.0 1 1 4.6e-20 4.4e-18 58.2 0.0 1 141 103 283 103 320 0.75 # 22506 # 23687 # -1 # ID=3_32;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 2_9 - 4435 KR PF08659.5 181 4.3e-34 110.5 0.0 1 1 1.8e-35 1.7e-33 108.6 0.0 3 180 2312 2497 2311 2498 0.93 # 14931 # 28235 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.404 1_25 - 106 NAD_binding_11 PF14833.1 122 0.00074 12.4 0.0 1 1 1.1e-05 0.001 12.0 0.0 54 100 28 74 22 80 0.86 # 24115 # 24432 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 3_8 - 278 N6_Mtase PF02384.11 311 1.8e-10 33.1 0.0 1 1 3e-12 2.8e-10 32.5 0.0 25 117 139 237 130 253 0.84 # 5321 # 6154 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_22 - 965 TraG-D_C PF12696.2 128 2.4e-19 62.3 0.0 1 1 4.8e-21 4.6e-19 61.4 0.0 1 126 439 560 439 562 0.83 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 3_32 - 394 AAA_31 PF13614.1 157 0.00052 12.8 0.0 1 1 3e-05 0.0029 10.4 0.0 108 147 227 265 223 271 0.86 # 22506 # 23687 # -1 # ID=3_32;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 1_22 - 965 AAA_33 PF13671.1 143 0.0004 13.1 0.0 1 1 2.6e-05 0.0024 10.6 0.0 3 24 208 229 207 274 0.91 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 3_26 - 146 Methyltransf_26 PF13659.1 117 5.9e-07 22.4 0.1 1 1 1.8e-08 8.5e-07 21.9 0.1 4 44 87 126 84 141 0.83 # 17866 # 18303 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 3_8 - 278 Methyltransf_26 PF13659.1 117 0.00027 13.8 0.0 1 2 0.048 2.3 1.2 0.0 9 48 28 82 24 149 0.75 # 5321 # 6154 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 3_8 - 278 Methyltransf_26 PF13659.1 117 0.00027 13.8 0.0 2 2 6.2e-05 0.003 10.5 0.0 3 63 171 238 170 267 0.81 # 5321 # 6154 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_9 - 864 ABC_tran PF00005.22 137 0.00081 12.5 0.0 1 1 2.1e-05 0.002 11.3 0.0 13 96 476 599 472 614 0.60 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_9 - 864 AAA_10 PF12846.2 304 4.1e-45 147.3 0.0 1 1 1.9e-46 9e-45 146.2 0.0 1 291 474 760 474 767 0.89 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_22 - 965 AAA_10 PF12846.2 304 3.3e-17 55.6 0.6 1 2 5.7e-18 2.7e-16 52.6 0.1 3 299 206 517 205 520 0.81 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_22 - 965 AAA_10 PF12846.2 304 3.3e-17 55.6 0.6 2 2 0.078 3.7 -0.4 0.1 28 116 781 927 774 952 0.44 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_37 - 149 DUF3584 PF12128.3 1201 0.0047 7.0 17.5 1 1 5.8e-05 0.0055 6.8 17.5 622 746 7 130 1 144 0.51 # 30854 # 31300 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.604 1_22 - 965 TrwB_AAD_bind PF10412.4 386 3.3e-150 492.7 0.0 1 1 9.6e-152 4.5e-150 492.3 0.0 2 386 191 581 190 581 0.99 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_9 - 864 TrwB_AAD_bind PF10412.4 386 3.5e-05 15.3 0.0 1 1 1.5e-06 7e-05 14.4 0.0 16 71 475 536 470 545 0.79 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 3_12 - 383 TIGR00344 TIGR00344 847 1.2e-05 16.2 0.5 1 1 1.8e-07 1.7e-05 15.7 0.5 680 777 161 255 155 269 0.79 # 7943 # 9091 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_22 - 965 T4SS-DNA_transf PF02534.9 469 7.3e-12 37.3 0.0 1 1 1.9e-12 1.8e-10 32.8 0.0 132 395 283 529 270 593 0.73 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 3_26 - 146 MethyltransfD12 PF02086.10 260 0.00093 11.5 0.0 1 1 1.4e-05 0.0013 11.0 0.0 20 46 83 109 68 117 0.79 # 17866 # 18303 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 1_22 - 965 GTP_EFTU PF00009.22 188 0.00087 11.6 0.0 1 2 0.00069 0.065 5.5 0.0 2 28 203 229 202 251 0.90 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_22 - 965 GTP_EFTU PF00009.22 188 0.00087 11.6 0.0 2 2 0.0027 0.26 3.5 0.0 51 85 354 386 333 394 0.89 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_37 - 149 AAA_9 PF12781.2 228 0.00089 11.0 2.8 1 1 3.4e-06 0.00033 12.4 0.4 157 205 82 130 66 139 0.91 # 30854 # 31300 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.604 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/50931910-93d6-48c3-be00-2a0e56dab7bb # Target file: checkm_output/bins/pm323/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm323/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/50931910-93d6-48c3-be00-2a0e56dab7bb checkm_output/bins/pm323/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:04:50 2020 # [ok]