# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 458 Methyltransf_12 PF08242.7 99 6.1e-05 15.9 0.1 1 1 2.5e-06 0.00017 14.4 0.1 2 98 243 333 242 334 0.71 # 1491 # 2864 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_43 - 217 IstB_IS21 PF01695.12 178 6.4e-05 14.8 0.3 1 1 3.4e-06 0.00024 12.9 0.3 51 88 7 44 4 108 0.89 # 33305 # 33955 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_43 - 217 MipZ PF09140.6 261 2.3e-10 32.3 0.0 1 1 6.1e-12 4.2e-10 31.4 0.0 5 58 7 60 3 130 0.86 # 33305 # 33955 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_43 - 217 YhjQ PF06564.7 244 0.00057 11.6 0.0 1 2 5.2e-05 0.0036 9.0 0.1 10 38 11 39 3 43 0.91 # 33305 # 33955 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_43 - 217 YhjQ PF06564.7 244 0.00057 11.6 0.0 2 2 0.03 2 -0.0 0.0 105 143 69 107 53 113 0.78 # 33305 # 33955 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_4 - 458 Methyltransf_18 PF12847.2 112 0.00013 14.9 0.1 1 1 5.6e-06 0.00039 13.4 0.1 2 108 238 335 237 338 0.81 # 1491 # 2864 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_43 - 217 SRP54 PF00448.17 196 0.0002 13.2 0.0 1 1 5.1e-06 0.00036 12.4 0.0 4 91 6 89 3 108 0.80 # 33305 # 33955 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_43 - 217 AAA_17 PF13207.1 121 0.00012 15.3 0.0 1 2 7e-06 0.00048 13.4 0.0 6 35 10 52 5 131 0.62 # 33305 # 33955 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_43 - 217 AAA_17 PF13207.1 121 0.00012 15.3 0.0 2 2 0.095 6.5 0.0 0.0 24 40 161 178 99 213 0.57 # 33305 # 33955 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_43 - 217 ArsA_ATPase PF02374.10 305 1.1e-07 23.5 0.1 1 2 3e-08 2.1e-06 19.3 0.3 5 38 7 40 3 42 0.93 # 33305 # 33955 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_43 - 217 ArsA_ATPase PF02374.10 305 1.1e-07 23.5 0.1 2 2 0.0089 0.61 1.4 0.0 117 133 72 88 64 91 0.91 # 33305 # 33955 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_43 - 217 VirC1 PF07015.6 231 0.00055 11.4 0.1 1 1 1.7e-05 0.0011 10.4 0.1 10 130 11 128 3 132 0.85 # 33305 # 33955 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_43 - 217 Methyltransf_16 PF10294.4 174 0.00025 12.9 0.0 1 1 5.4e-06 0.00037 12.3 0.0 62 146 23 107 19 112 0.88 # 33305 # 33955 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_21 - 819 AAA_13 PF13166.1 712 0.0019 9.0 11.9 1 2 4.5e-06 0.00031 11.6 7.7 320 476 28 194 7 212 0.74 # 15476 # 17932 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_21 - 819 AAA_13 PF13166.1 712 0.0019 9.0 11.9 2 2 0.066 4.5 -2.2 0.1 452 494 377 421 353 478 0.71 # 15476 # 17932 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_43 - 217 CbiA PF01656.18 195 7.7e-18 56.9 0.1 1 1 1.9e-19 1.3e-17 56.2 0.1 3 194 7 178 5 180 0.77 # 33305 # 33955 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_66 - 190 MT-A70 PF05063.9 176 7.2e-34 109.2 0.0 1 1 1.2e-35 8.2e-34 109.0 0.0 1 176 2 174 2 174 0.92 # 44996 # 45565 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.539 1_43 - 217 AAA_31 PF13614.1 157 1.8e-09 30.1 0.0 1 2 3.7e-08 2.5e-06 19.9 0.0 3 44 5 46 4 65 0.90 # 33305 # 33955 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_43 - 217 AAA_31 PF13614.1 157 1.8e-09 30.1 0.0 2 2 0.00014 0.0099 8.2 0.0 114 149 76 112 69 119 0.85 # 33305 # 33955 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_4 - 458 Methyltransf_31 PF13847.1 152 0.00015 13.8 0.0 1 2 0.016 1.1 1.2 0.0 8 23 242 257 237 268 0.83 # 1491 # 2864 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_4 - 458 Methyltransf_31 PF13847.1 152 0.00015 13.8 0.0 2 2 3.1e-05 0.0022 10.0 0.0 66 126 293 353 281 396 0.67 # 1491 # 2864 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_59 - 99 DUF3584 PF12128.3 1201 0.0001 12.1 0.7 1 1 1.7e-06 0.00011 11.9 0.7 832 901 10 82 3 94 0.76 # 40836 # 41132 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_4 - 458 Methyltransf_23 PF13489.1 161 7.3e-19 60.4 0.0 1 1 1.5e-20 1.1e-18 59.9 0.0 24 159 220 400 198 402 0.71 # 1491 # 2864 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_8 - 620 Terminase_GpA PF05876.7 557 3.1e-178 585.9 0.0 1 1 6e-180 4.1e-178 585.5 0.0 4 551 34 583 31 590 0.96 # 5257 # 7116 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.501 1_43 - 217 AAA_25 PF13481.1 194 6.1e-06 18.1 0.8 1 1 4e-07 2.7e-05 16.0 0.8 34 149 4 88 2 97 0.68 # 33305 # 33955 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3d59a7e9-bc05-4fd5-aedd-956f513bcf40 # Target file: checkm_output/bins/pm321/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm321/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3d59a7e9-bc05-4fd5-aedd-956f513bcf40 checkm_output/bins/pm321/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:04:47 2020 # [ok]