# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 220 Methyltransf_12 PF08242.7 99 1.3e-15 49.0 0.1 1 2 2.3e-16 7e-15 46.6 0.0 1 99 54 152 54 152 0.95 # 8430 # 9089 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_6 - 220 Methyltransf_12 PF08242.7 99 1.3e-15 49.0 0.1 2 2 0.081 2.4 -0.0 0.0 49 70 181 202 161 210 0.76 # 8430 # 9089 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 207 cobW PF02492.14 178 0.00015 12.5 0.1 1 2 2.8e-05 0.00083 10.0 0.0 10 38 12 41 3 48 0.86 # 11000 # 11620 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_9 - 207 cobW PF02492.14 178 0.00015 12.5 0.1 2 2 0.031 0.94 0.1 0.0 114 146 115 147 71 158 0.76 # 11000 # 11620 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_22 - 519 Seryl_tRNA_N PF02403.17 108 0.076 4.3 15.4 1 2 0.0011 0.033 5.5 0.4 36 106 243 314 218 316 0.72 # 19264 # 20820 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 1_22 - 519 Seryl_tRNA_N PF02403.17 108 0.076 4.3 15.4 2 2 0.00048 0.014 6.7 2.0 26 93 436 507 414 517 0.81 # 19264 # 20820 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 1_18 - 322 Saccharop_dh PF03435.13 386 8.6e-07 19.3 0.3 1 2 3e-07 9e-06 16.0 0.6 1 100 26 159 26 211 0.71 # 15683 # 16648 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_18 - 322 Saccharop_dh PF03435.13 386 8.6e-07 19.3 0.3 2 2 0.028 0.84 -0.4 0.0 261 307 256 298 223 306 0.75 # 15683 # 16648 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_9 - 207 MipZ PF09140.6 261 6.5e-14 42.7 0.9 1 2 2.4e-10 7.2e-09 26.2 0.0 2 47 3 47 2 56 0.88 # 11000 # 11620 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_9 - 207 MipZ PF09140.6 261 6.5e-14 42.7 0.9 2 2 5.1e-07 1.5e-05 15.3 0.3 96 141 73 118 49 150 0.84 # 11000 # 11620 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_6 - 220 Methyltransf_18 PF12847.2 112 3.7e-11 34.9 0.0 1 1 2.8e-12 8.4e-11 33.7 0.0 3 107 51 152 50 157 0.86 # 8430 # 9089 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 207 DUF1611 PF07755.6 301 8.3e-07 19.1 0.4 1 1 4.4e-08 1.3e-06 18.4 0.4 124 200 13 90 11 105 0.87 # 11000 # 11620 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_9 - 207 ATP_bind_1 PF03029.12 238 6.9e-06 16.9 0.1 1 1 3.7e-07 1.1e-05 16.2 0.1 6 44 12 50 10 74 0.84 # 11000 # 11620 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_6 - 220 Methyltransf_11 PF08241.7 95 1.7e-13 42.1 0.0 1 1 1.1e-14 3.4e-13 41.2 0.0 1 93 54 152 54 153 0.91 # 8430 # 9089 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_18 - 322 NAD_binding_7 PF13241.1 103 1.7e-05 16.3 0.0 1 1 1.3e-06 3.8e-05 15.2 0.0 5 91 21 144 19 148 0.71 # 15683 # 16648 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_9 - 207 AAA_17 PF13207.1 121 0.0002 13.4 0.0 1 1 1.1e-05 0.00033 12.7 0.0 9 80 12 86 11 156 0.69 # 11000 # 11620 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_9 - 207 MobB PF03205.9 140 2.8e-05 15.1 0.1 1 1 5.2e-06 0.00016 12.6 0.1 10 102 12 86 2 105 0.68 # 11000 # 11620 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_9 - 207 ArsA_ATPase PF02374.10 305 1.9e-07 21.6 0.2 1 1 1e-08 3.1e-07 20.9 0.1 5 45 6 46 1 84 0.91 # 11000 # 11620 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_18 - 322 Shikimate_DH PF01488.15 135 4.1e-05 14.9 0.2 1 1 2.4e-06 7.3e-05 14.1 0.2 7 36 18 47 12 53 0.87 # 15683 # 16648 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_16 - 66 TGS PF02824.16 60 0.00029 11.9 0.0 1 1 1.5e-05 0.00045 11.3 0.0 28 59 24 59 10 60 0.75 # 14708 # 14905 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_9 - 207 VirC1 PF07015.6 231 5.7e-15 46.2 0.2 1 1 3.5e-16 1.1e-14 45.3 0.2 1 129 1 121 1 157 0.81 # 11000 # 11620 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_9 - 207 Fer4_NifH PF00142.13 273 9.2e-08 22.7 0.0 1 1 5.2e-09 1.6e-07 22.0 0.0 8 63 10 65 3 91 0.88 # 11000 # 11620 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_9 - 207 CbiA PF01656.18 195 7.6e-28 88.4 1.4 1 1 5.6e-29 1.7e-27 87.3 1.4 1 143 4 124 4 170 0.74 # 11000 # 11620 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_6 - 220 Methyltransf_25 PF13649.1 101 1.2e-07 23.3 0.0 1 1 6.6e-09 2e-07 22.6 0.0 2 82 54 129 53 150 0.79 # 8430 # 9089 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_15 - 361 FAD_binding_2 PF00890.19 417 4.5e-06 16.9 0.2 1 1 2.9e-07 8.7e-06 15.9 0.1 4 49 56 100 55 147 0.91 # 13629 # 14711 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.625 1_16 - 66 ThiS PF02597.15 77 1.8e-12 38.8 0.0 1 1 7.1e-14 2.1e-12 38.6 0.0 17 77 10 65 3 65 0.90 # 14708 # 14905 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_9 - 207 AAA_31 PF13614.1 157 1.8e-08 25.7 0.2 1 2 1.2e-07 3.7e-06 18.2 0.0 1 39 2 40 2 46 0.94 # 11000 # 11620 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_9 - 207 AAA_31 PF13614.1 157 1.8e-08 25.7 0.2 2 2 0.0011 0.032 5.4 0.0 115 152 74 109 58 114 0.83 # 11000 # 11620 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_6 - 220 Methyltransf_26 PF13659.1 117 2.4e-08 25.3 0.0 1 1 1.2e-09 3.5e-08 24.8 0.0 3 75 52 120 50 215 0.86 # 8430 # 9089 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_18 - 322 2-Hacid_dh_C PF02826.14 178 0.00025 11.4 0.0 1 1 1.5e-05 0.00046 10.6 0.0 28 73 15 61 1 77 0.74 # 15683 # 16648 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_9 - 207 AAA_30 PF13604.1 196 9.8e-05 13.2 0.2 1 1 6.7e-06 0.0002 12.2 0.2 26 106 10 88 2 97 0.78 # 11000 # 11620 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_18 - 322 ApbA PF02558.11 151 0.00032 11.3 0.1 1 1 1.7e-05 0.0005 10.8 0.1 1 51 26 79 26 118 0.76 # 15683 # 16648 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_6 - 220 MTS PF05175.9 170 6.5e-13 39.6 0.2 1 1 5.5e-14 1.6e-12 38.3 0.1 21 136 39 152 36 158 0.88 # 8430 # 9089 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_6 - 220 Methyltransf_9 PF08003.6 315 2.2e-05 14.4 0.0 1 1 8.2e-07 2.5e-05 14.3 0.0 95 174 30 104 10 167 0.71 # 8430 # 9089 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 207 AAA_10 PF12846.2 304 2e-05 15.3 0.0 1 1 7.9e-07 2.4e-05 15.1 0.0 11 47 12 50 10 171 0.91 # 11000 # 11620 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_6 - 220 NodS PF05401.6 201 3.3e-07 21.1 0.0 1 1 1.5e-08 4.5e-07 20.6 0.0 16 146 20 160 15 169 0.75 # 8430 # 9089 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_15 - 361 DAO PF01266.19 358 2.6e-31 99.9 2.1 1 1 8.6e-31 2.6e-29 93.3 2.1 4 356 56 351 53 354 0.84 # 13629 # 14711 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.625 1_18 - 322 ThiF PF00899.16 136 2e-40 129.0 0.0 1 1 1.1e-41 3.4e-40 128.2 0.0 2 132 23 153 22 155 0.98 # 15683 # 16648 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_6 - 220 Methyltransf_31 PF13847.1 152 1.3e-11 35.5 0.0 1 1 7.3e-13 2.2e-11 34.8 0.0 5 106 51 152 47 166 0.89 # 8430 # 9089 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_15 - 361 Pyr_redox PF00070.22 80 0.00014 13.5 0.0 1 2 0.00014 0.0043 8.7 0.0 2 30 54 82 53 86 0.88 # 13629 # 14711 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.625 1_15 - 361 Pyr_redox PF00070.22 80 0.00014 13.5 0.0 2 2 0.019 0.57 1.9 0.0 40 58 185 203 179 209 0.84 # 13629 # 14711 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.625 1_9 - 207 ArgK PF03308.11 267 3.5e-05 13.8 0.0 1 1 2.7e-06 8.1e-05 12.6 0.0 39 72 12 45 5 54 0.89 # 11000 # 11620 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_6 - 220 Methyltransf_23 PF13489.1 161 9.7e-12 36.1 0.0 1 1 4.2e-13 1.3e-11 35.7 0.0 15 152 43 196 29 203 0.84 # 8430 # 9089 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/efa9f071-cfef-4620-b27b-40902ea6364a # Target file: checkm_output/bins/pm32/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm32/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/efa9f071-cfef-4620-b27b-40902ea6364a checkm_output/bins/pm32/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:04:44 2020 # [ok]