# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_55 - 146 UPF0020 PF01170.13 180 0.00062 11.9 0.0 1 1 1.1e-05 0.00083 11.4 0.0 27 68 82 112 78 138 0.70 # 45567 # 46004 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 1_32 - 745 cobW PF02492.14 178 0.0005 12.0 0.0 1 1 1.2e-05 0.0009 11.2 0.0 5 38 190 222 187 273 0.68 # 26138 # 28372 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_62 - 402 MipZ PF09140.6 261 4.6e-06 18.3 0.0 1 2 0.0027 0.2 3.1 0.0 3 50 111 163 109 193 0.73 # 50207 # 51412 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_62 - 402 MipZ PF09140.6 261 4.6e-06 18.3 0.0 2 2 2.8e-06 0.00021 12.9 0.0 87 136 233 282 220 305 0.87 # 50207 # 51412 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_47 - 185 SSB PF00436.20 104 3.6e-43 138.3 0.5 1 1 5.7e-45 4.3e-43 138.0 0.5 1 100 6 109 6 113 0.95 # 40891 # 41445 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.596 1_31 - 1768 UvrD_C_2 PF13538.1 104 9.5e-09 27.9 0.1 1 1 4.9e-10 3.7e-08 26.0 0.1 3 103 1347 1452 1345 1453 0.77 # 20835 # 26138 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_32 - 745 DUF87 PF01935.12 229 0.00028 13.2 0.0 1 1 8.9e-06 0.00067 12.0 0.0 11 57 176 218 161 236 0.82 # 26138 # 28372 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_32 - 745 AAA_22 PF13401.1 131 0.0005 12.7 0.0 1 1 1.5e-05 0.0011 11.6 0.0 8 31 189 212 183 325 0.80 # 26138 # 28372 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_55 - 146 N6_N4_Mtase PF01555.13 231 8.7e-26 83.3 0.0 1 2 0.00035 0.026 6.4 0.0 72 114 6 44 1 59 0.79 # 45567 # 46004 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 1_55 - 146 N6_N4_Mtase PF01555.13 231 8.7e-26 83.3 0.0 2 2 3.6e-25 2.7e-23 75.1 0.0 169 228 61 120 52 123 0.92 # 45567 # 46004 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 1_32 - 745 MobB PF03205.9 140 0.00063 12.0 0.0 1 1 2e-05 0.0015 10.8 0.0 5 33 190 218 187 224 0.86 # 26138 # 28372 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_32 - 745 Arch_ATPase PF01637.13 234 4.8e-05 15.6 0.0 1 1 1.2e-06 9e-05 14.7 0.0 27 76 192 235 184 316 0.83 # 26138 # 28372 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_32 - 745 AAA_16 PF13191.1 185 3.1e-05 16.5 0.0 1 1 1.3e-06 9.9e-05 14.9 0.0 22 55 183 217 179 311 0.91 # 26138 # 28372 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_72 - 4435 adh_short PF00106.20 167 1.1e-24 79.7 0.0 1 1 3.6e-26 2.7e-24 78.5 0.0 2 166 2311 2483 2310 2484 0.90 # 66350 # 79654 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.404 1_17 - 323 AAA_13 PF13166.1 712 0.0063 7.4 21.8 1 1 0.00015 0.011 6.6 21.8 287 471 81 282 64 291 0.68 # 11962 # 12930 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_62 - 402 CbiA PF01656.18 195 1.8e-18 59.1 0.0 1 1 4.9e-20 3.6e-18 58.1 0.0 1 141 111 291 111 328 0.75 # 50207 # 51412 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_31 - 1768 AAA PF00004.24 132 0.00036 13.3 0.5 1 3 0.079 6 -0.4 0.0 53 90 102 141 88 162 0.69 # 20835 # 26138 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_31 - 1768 AAA PF00004.24 132 0.00036 13.3 0.5 2 3 0.00081 0.06 6.1 0.0 3 24 992 1013 990 1088 0.66 # 20835 # 26138 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_31 - 1768 AAA PF00004.24 132 0.00036 13.3 0.5 3 3 0.019 1.4 1.7 0.0 29 100 1625 1696 1586 1725 0.76 # 20835 # 26138 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_72 - 4435 KR PF08659.5 181 3.4e-34 110.5 0.0 1 1 1.8e-35 1.3e-33 108.6 0.0 3 180 2312 2497 2311 2498 0.93 # 66350 # 79654 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.404 1_28 - 106 NAD_binding_11 PF14833.1 122 0.00059 12.4 0.0 1 1 1.1e-05 0.00079 12.0 0.0 54 100 28 74 22 80 0.86 # 18990 # 19307 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_37 - 278 N6_Mtase PF02384.11 311 1.5e-10 33.1 0.0 1 1 3e-12 2.2e-10 32.5 0.0 25 117 139 237 130 253 0.84 # 33022 # 33855 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_32 - 745 TraG-D_C PF12696.2 128 1.4e-19 62.8 0.0 1 1 3.3e-21 2.5e-19 61.9 0.0 1 126 420 541 420 543 0.83 # 26138 # 28372 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_62 - 402 AAA_31 PF13614.1 157 0.00042 12.8 0.0 1 1 3.1e-05 0.0023 10.3 0.0 108 147 235 273 231 279 0.86 # 50207 # 51412 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_32 - 745 AAA_33 PF13671.1 143 0.00048 12.5 0.0 1 1 1.9e-05 0.0014 11.0 0.0 3 24 189 210 188 257 0.91 # 26138 # 28372 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_55 - 146 Methyltransf_26 PF13659.1 117 4.7e-07 22.4 0.1 1 1 1.8e-08 6.7e-07 21.9 0.1 4 44 87 126 84 141 0.83 # 45567 # 46004 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 1_37 - 278 Methyltransf_26 PF13659.1 117 0.00021 13.8 0.0 1 2 0.048 1.8 1.2 0.0 9 48 28 82 24 149 0.75 # 33022 # 33855 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_37 - 278 Methyltransf_26 PF13659.1 117 0.00021 13.8 0.0 2 2 6.2e-05 0.0023 10.5 0.0 3 63 171 238 170 267 0.81 # 33022 # 33855 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_31 - 1768 AAA_30 PF13604.1 196 3.7e-41 133.3 2.7 1 2 6.5e-05 0.0049 8.9 0.9 9 127 434 546 429 562 0.78 # 20835 # 26138 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_31 - 1768 AAA_30 PF13604.1 196 3.7e-41 133.3 2.7 2 2 5e-43 3.7e-41 133.3 2.7 2 186 971 1158 970 1162 0.90 # 20835 # 26138 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_31 - 1768 AAA_19 PF13245.1 76 5.9e-08 24.9 3.0 1 2 0.046 3.5 0.0 0.0 20 60 450 490 434 499 0.75 # 20835 # 26138 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_31 - 1768 AAA_19 PF13245.1 76 5.9e-08 24.9 3.0 2 2 1e-08 7.6e-07 21.4 0.3 9 76 986 1049 977 1049 0.78 # 20835 # 26138 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_32 - 745 AAA_10 PF12846.2 304 3.7e-17 55.1 0.1 1 1 1.7e-18 1.2e-16 53.4 0.1 3 299 187 498 186 501 0.81 # 26138 # 28372 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_17 - 323 DUF3584 PF12128.3 1201 0.0012 8.6 28.3 1 1 2.2e-05 0.0016 8.2 28.3 379 543 76 246 43 282 0.52 # 11962 # 12930 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_32 - 745 TrwB_AAD_bind PF10412.4 386 1.6e-150 493.5 0.0 1 1 2.6e-152 1.9e-150 493.2 0.0 2 386 172 562 171 562 0.99 # 26138 # 28372 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_41 - 383 TIGR00344 TIGR00344 847 9.2e-06 16.2 0.5 1 1 1.8e-07 1.4e-05 15.7 0.5 680 777 161 255 155 269 0.79 # 35644 # 36792 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_32 - 745 T4SS-DNA_transf PF02534.9 469 3e-12 38.2 0.0 1 1 1.1e-12 8.5e-11 33.5 0.0 132 395 264 510 252 575 0.73 # 26138 # 28372 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_55 - 146 MethyltransfD12 PF02086.10 260 0.00074 11.5 0.0 1 1 1.4e-05 0.0011 11.0 0.0 20 46 83 109 68 117 0.79 # 45567 # 46004 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 1_32 - 745 GTP_EFTU PF00009.22 188 0.0004 12.3 0.0 1 2 0.00051 0.038 5.9 0.0 2 28 184 210 183 232 0.90 # 26138 # 28372 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_32 - 745 GTP_EFTU PF00009.22 188 0.0004 12.3 0.0 2 2 0.002 0.15 4.0 0.0 51 85 335 367 314 375 0.89 # 26138 # 28372 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9c7de868-e84a-4133-b1c2-8497cfb13596 # Target file: checkm_output/bins/pm314/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm314/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9c7de868-e84a-4133-b1c2-8497cfb13596 checkm_output/bins/pm314/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:04:42 2020 # [ok]