# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_49 - 519 UPF0020 PF01170.13 180 1.2e-08 28.0 0.0 1 1 2.8e-10 3.6e-08 26.4 0.0 11 117 202 304 195 310 0.75 # 44909 # 46465 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.492 1_127 - 213 cobW PF02492.14 178 0.00063 12.5 0.0 1 1 8.3e-06 0.0011 11.7 0.0 2 38 51 87 50 113 0.77 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_4 - 419 Terminase_6 PF03237.10 384 1.5e-20 66.5 0.0 1 1 1.3e-22 1.7e-20 66.3 0.0 4 382 31 403 28 405 0.89 # 1692 # 2948 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 1_66 - 359 IstB_IS21 PF01695.12 178 0.00022 14.0 0.0 1 1 3.5e-06 0.00045 12.9 0.0 52 81 56 85 51 100 0.83 # 62561 # 63637 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_33 - 222 MipZ PF09140.6 261 2e-18 59.6 1.0 1 1 1.2e-18 1.6e-16 53.4 1.0 2 150 4 133 3 145 0.84 # 30549 # 31214 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_89 - 215 CoaE PF01121.15 180 8.4e-06 18.5 0.1 1 1 1.3e-07 1.7e-05 17.5 0.1 2 30 4 33 3 39 0.93 # 81893 # 82537 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_33 - 222 Methyltransf_18 PF12847.2 112 0.00088 13.1 0.1 1 1 1.3e-05 0.0017 12.2 0.1 22 79 31 91 20 150 0.80 # 30549 # 31214 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_127 - 213 NB-ARC PF00931.17 287 0.0013 10.8 1.2 1 1 8.3e-06 0.0011 11.1 0.2 9 42 39 72 32 201 0.91 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_127 - 213 AAA_22 PF13401.1 131 3e-07 23.9 0.0 1 1 1.5e-08 9.4e-07 22.3 0.0 3 86 48 176 43 193 0.75 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_89 - 215 AAA_22 PF13401.1 131 0.00089 12.7 0.2 1 1 2e-05 0.0013 12.2 0.2 9 26 7 24 3 178 0.94 # 81893 # 82537 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_127 - 213 PRK PF00485.13 194 6.1e-05 15.9 0.0 1 1 1.7e-06 0.00011 15.1 0.0 1 35 51 85 51 107 0.78 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_89 - 215 PRK PF00485.13 194 0.0004 13.2 0.0 1 1 8.8e-06 0.00057 12.7 0.0 2 30 5 33 4 70 0.83 # 81893 # 82537 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_33 - 222 SRP54 PF00448.17 196 0.0019 10.9 1.6 1 1 4e-05 0.0052 9.5 1.6 3 43 4 46 2 109 0.76 # 30549 # 31214 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_127 - 213 KAP_NTPase PF07693.9 325 2.8e-07 23.0 0.0 1 1 2.6e-09 3.3e-07 22.8 0.0 17 115 46 142 37 202 0.69 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_127 - 213 AAA_15 PF13175.1 415 0.00017 13.9 0.0 1 1 1.6e-06 0.00021 13.7 0.0 14 55 41 96 9 142 0.76 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_89 - 215 AAA_17 PF13207.1 121 2e-11 38.1 0.1 1 1 6.1e-13 2.6e-11 37.7 0.1 1 100 4 108 4 207 0.75 # 81893 # 82537 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_127 - 213 AAA_17 PF13207.1 121 4.4e-07 24.1 0.0 1 1 1.6e-08 6.9e-07 23.4 0.0 1 33 51 86 51 191 0.80 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_33 - 222 AAA_17 PF13207.1 121 0.00092 13.3 0.2 1 1 4.6e-05 0.002 12.3 0.1 2 88 5 100 3 142 0.56 # 30549 # 31214 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_80 - 639 AAA_21 PF13304.1 303 3.2e-05 17.2 0.0 1 2 0.00093 0.06 6.5 0.0 8 22 42 56 41 97 0.88 # 71883 # 73799 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_80 - 639 AAA_21 PF13304.1 303 3.2e-05 17.2 0.0 2 2 0.00022 0.014 8.6 0.0 204 297 539 615 438 616 0.82 # 71883 # 73799 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_89 - 215 AAA_21 PF13304.1 303 0.0017 11.6 0.0 1 1 3.5e-05 0.0022 11.2 0.0 3 22 6 25 5 70 0.86 # 81893 # 82537 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_127 - 213 MobB PF03205.9 140 3.7e-06 20.0 0.0 1 1 1.4e-07 8.7e-06 18.8 0.0 2 38 51 87 50 103 0.88 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_89 - 215 MobB PF03205.9 140 0.00067 12.6 0.0 1 1 2e-05 0.0013 11.7 0.0 2 20 4 22 3 25 0.90 # 81893 # 82537 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_124 - 520 Helicase_C PF00271.26 78 2.1e-14 46.5 0.0 1 1 5e-16 6.5e-14 44.9 0.0 2 78 387 463 386 463 0.97 # 105725 # 107284 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_33 - 222 ArsA_ATPase PF02374.10 305 0.00096 11.5 1.5 1 1 1.5e-05 0.0019 10.5 1.5 1 33 2 35 2 42 0.82 # 30549 # 31214 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_4 - 419 PhoH PF02562.11 205 0.00039 12.9 0.0 1 2 2.7e-05 0.0035 9.8 0.0 31 138 36 136 12 146 0.65 # 1692 # 2948 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 1_4 - 419 PhoH PF02562.11 205 0.00039 12.9 0.0 2 2 0.039 5 -0.5 0.0 65 106 351 392 340 396 0.78 # 1692 # 2948 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 1_127 - 213 T2SE PF00437.15 272 0.0002 13.6 0.1 1 1 2.7e-06 0.00035 12.8 0.1 116 164 37 85 4 110 0.79 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_89 - 215 Cytidylate_kin2 PF13189.1 179 0.00026 14.2 0.5 1 1 4.8e-06 0.00061 13.0 0.1 2 30 5 33 4 44 0.90 # 81893 # 82537 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_127 - 213 Zeta_toxin PF06414.7 201 1.3e-05 17.7 0.0 1 2 3.2e-07 4.1e-05 16.0 0.0 14 51 47 84 37 91 0.79 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_127 - 213 Zeta_toxin PF06414.7 201 1.3e-05 17.7 0.0 2 2 0.066 8.5 -1.4 0.0 171 185 156 170 125 199 0.59 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_52 - 203 CMS1 PF14617.1 252 0.0002 13.7 0.0 1 1 1.9e-06 0.00025 13.4 0.0 117 198 53 131 5 145 0.69 # 47469 # 48077 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=11-12bp;gc_cont=0.478 1_80 - 639 SMC_N PF02463.14 220 4.7e-15 48.6 0.4 1 1 1.3e-16 8.2e-15 47.8 0.4 32 200 41 618 3 635 0.91 # 71883 # 73799 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_127 - 213 SMC_N PF02463.14 220 4.5e-05 16.0 0.6 1 2 0.00074 0.048 6.1 0.1 25 42 50 67 37 78 0.82 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_127 - 213 SMC_N PF02463.14 220 4.5e-05 16.0 0.6 2 2 0.00011 0.0073 8.8 0.0 135 204 117 192 67 208 0.65 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_33 - 222 VirC1 PF07015.6 231 1.2e-08 27.5 0.0 1 1 1.4e-10 1.8e-08 27.0 0.0 2 189 3 189 2 204 0.79 # 30549 # 31214 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_33 - 222 Fer4_NifH PF00142.13 273 0.00059 12.3 0.4 1 1 6.8e-06 0.00087 11.7 0.1 7 88 9 91 2 97 0.67 # 30549 # 31214 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_127 - 213 Arch_ATPase PF01637.13 234 0.00021 14.3 0.0 1 1 2e-06 0.00025 14.0 0.0 18 68 47 97 41 180 0.82 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_127 - 213 AAA_16 PF13191.1 185 5.7e-08 26.2 0.0 1 1 6e-10 7.8e-08 25.7 0.0 13 82 39 102 30 182 0.76 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_80 - 639 AAA_23 PF13476.1 202 8.6e-19 61.9 0.0 1 1 5.4e-20 6.9e-18 58.9 0.0 1 177 5 249 5 509 0.78 # 71883 # 73799 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_127 - 213 AAA_18 PF13238.1 129 1.8e-06 21.6 0.0 1 1 5.2e-08 3.4e-06 20.7 0.0 1 40 52 91 52 106 0.77 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_89 - 215 AAA_18 PF13238.1 129 2.4e-06 21.2 0.1 1 1 6.3e-08 4.1e-06 20.4 0.1 1 22 5 26 5 102 0.82 # 81893 # 82537 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_33 - 222 CbiA PF01656.18 195 4e-16 52.2 0.1 1 1 9e-18 5.8e-16 51.7 0.1 1 170 5 158 5 186 0.74 # 30549 # 31214 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_127 - 213 CbiA PF01656.18 195 0.00056 12.6 0.1 1 1 1.2e-05 0.00076 12.2 0.1 2 48 52 101 51 199 0.71 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_37 - 447 KaiC PF06745.8 227 1.8e-10 33.6 0.4 1 3 0.032 2.1 0.6 0.0 120 162 74 119 27 179 0.65 # 33360 # 34700 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.548 1_37 - 447 KaiC PF06745.8 227 1.8e-10 33.6 0.4 2 3 8.7e-11 5.6e-09 28.7 0.0 2 69 191 258 190 392 0.63 # 33360 # 34700 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.548 1_37 - 447 KaiC PF06745.8 227 1.8e-10 33.6 0.4 3 3 0.019 1.2 1.4 0.1 65 136 342 411 335 420 0.61 # 33360 # 34700 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.548 1_66 - 359 KaiC PF06745.8 227 4.5e-05 15.9 0.0 1 1 1.2e-06 7.9e-05 15.1 0.0 13 46 41 78 20 98 0.76 # 62561 # 63637 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_127 - 213 AAA_14 PF13173.1 128 0.00038 13.6 0.0 1 1 1.6e-05 0.001 12.2 0.0 2 45 49 91 48 123 0.72 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_89 - 215 AAA_14 PF13173.1 128 0.0013 12.0 0.0 1 1 4.3e-05 0.0028 10.9 0.0 5 27 5 26 2 40 0.77 # 81893 # 82537 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_127 - 213 AAA_29 PF13555.1 62 1.2e-07 24.5 0.0 1 1 6.2e-09 2.7e-07 23.4 0.0 8 40 35 66 32 71 0.91 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_80 - 639 AAA_29 PF13555.1 62 0.0001 15.1 0.1 1 1 1.4e-05 0.00061 12.6 0.0 31 51 41 61 4 66 0.81 # 71883 # 73799 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_89 - 215 AAA_29 PF13555.1 62 0.00086 12.1 0.0 1 1 4.1e-05 0.0017 11.2 0.0 28 39 7 18 2 28 0.81 # 81893 # 82537 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_89 - 215 AAA PF00004.24 132 0.00036 14.0 0.0 1 1 5e-06 0.00064 13.2 0.0 3 38 7 45 5 75 0.79 # 81893 # 82537 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_127 - 213 Sigma54_activat PF00158.21 168 0.00016 14.4 0.1 1 2 8.9e-06 0.0011 11.7 0.0 16 52 43 79 30 97 0.78 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_127 - 213 Sigma54_activat PF00158.21 168 0.00016 14.4 0.1 2 2 0.026 3.4 0.4 0.1 131 150 174 194 155 208 0.67 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_49 - 519 N6_Mtase PF02384.11 311 6.5e-117 383.2 0.7 1 1 1.4e-118 8.9e-117 382.8 0.7 2 310 171 479 170 480 0.97 # 44909 # 46465 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.492 1_101 - 562 N6_Mtase PF02384.11 311 5.4e-05 15.6 0.0 1 2 0.0016 0.1 4.8 0.0 26 64 399 438 390 444 0.90 # 91819 # 93504 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_101 - 562 N6_Mtase PF02384.11 311 5.4e-05 15.6 0.0 2 2 0.00018 0.012 7.9 0.0 122 146 479 503 462 537 0.81 # 91819 # 93504 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_127 - 213 DUF258 PF03193.11 161 1.5e-05 17.5 0.0 1 1 2e-07 2.6e-05 16.7 0.0 25 85 38 111 14 119 0.77 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_33 - 222 AAA_31 PF13614.1 157 2.8e-07 23.9 0.1 1 2 9.4e-07 0.00012 15.3 0.0 1 41 3 44 3 66 0.87 # 30549 # 31214 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_33 - 222 AAA_31 PF13614.1 157 2.8e-07 23.9 0.1 2 2 0.00044 0.057 6.6 0.0 112 151 73 114 51 120 0.75 # 30549 # 31214 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_127 - 213 NTPase_1 PF03266.10 168 4.6e-05 16.4 0.1 1 2 5.4e-06 0.00035 13.6 0.0 2 31 52 81 51 84 0.94 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_127 - 213 NTPase_1 PF03266.10 168 4.6e-05 16.4 0.1 2 2 0.077 4.9 0.1 0.0 94 136 143 189 124 210 0.55 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_89 - 215 NTPase_1 PF03266.10 168 0.00071 12.6 0.0 1 1 2.3e-05 0.0015 11.5 0.0 1 17 4 20 4 26 0.88 # 81893 # 82537 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_127 - 213 AAA_33 PF13671.1 143 0.0004 13.6 0.0 1 1 5.1e-06 0.00066 12.8 0.0 1 33 51 94 51 208 0.70 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_127 - 213 KTI12 PF08433.5 270 8.2e-07 21.7 0.1 1 2 3e-07 2e-05 17.2 0.0 4 40 52 88 50 104 0.89 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_127 - 213 KTI12 PF08433.5 270 8.2e-07 21.7 0.1 2 2 0.0086 0.56 2.6 0.0 187 218 149 180 136 209 0.65 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_47 - 1041 KTI12 PF08433.5 270 0.00013 14.5 0.0 1 1 6.5e-06 0.00042 12.8 0.0 141 186 870 916 867 921 0.91 # 40449 # 43571 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.476 1_37 - 447 DnaB_C PF03796.10 259 2.5e-12 39.4 0.2 1 1 3e-14 3.8e-12 38.8 0.2 2 251 190 433 189 441 0.76 # 33360 # 34700 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.548 1_49 - 519 Methyltransf_26 PF13659.1 117 3e-14 46.4 0.0 1 1 2.7e-15 1.7e-13 43.9 0.0 3 114 220 354 218 357 0.76 # 44909 # 46465 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.492 1_101 - 562 Methyltransf_26 PF13659.1 117 2.7e-08 27.2 0.0 1 1 8.8e-10 5.7e-08 26.1 0.0 2 116 422 519 421 520 0.83 # 91819 # 93504 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_127 - 213 AAA_30 PF13604.1 196 5.6e-05 16.0 0.8 1 1 1.7e-06 0.00022 14.1 0.8 17 50 48 81 42 190 0.78 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_127 - 213 FtsK_SpoIIIE PF01580.13 205 0.00026 13.8 0.0 1 2 7e-06 0.00091 12.0 0.0 18 58 28 69 16 73 0.81 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_127 - 213 FtsK_SpoIIIE PF01580.13 205 0.00026 13.8 0.0 2 2 0.055 7 -0.7 0.0 175 200 159 184 88 197 0.71 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_49 - 519 MTS PF05175.9 170 1.6e-06 20.9 0.2 1 1 6.4e-08 4.2e-06 19.5 0.0 31 140 217 355 199 374 0.81 # 44909 # 46465 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.492 1_101 - 562 MTS PF05175.9 170 0.00058 12.5 0.0 1 1 2.1e-05 0.0013 11.3 0.0 97 140 481 518 438 530 0.85 # 91819 # 93504 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_66 - 359 RecA PF00154.16 323 1.9e-47 155.1 0.0 1 1 2.5e-49 3.3e-47 154.3 0.0 22 281 16 306 11 341 0.80 # 62561 # 63637 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_127 - 213 ABC_tran PF00005.22 137 1.8e-14 47.5 0.1 1 1 8.1e-14 3.5e-12 40.1 0.1 1 134 39 152 39 155 0.85 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_80 - 639 ABC_tran PF00005.22 137 1.1e-06 22.2 5.3 1 2 0.00048 0.021 8.4 0.1 19 32 41 54 40 88 0.86 # 71883 # 73799 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_80 - 639 ABC_tran PF00005.22 137 1.1e-06 22.2 5.3 2 2 4.3e-06 0.00018 15.1 0.1 54 126 456 565 417 569 0.66 # 71883 # 73799 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_89 - 215 ABC_tran PF00005.22 137 0.00028 14.5 0.0 1 1 1.4e-05 0.0006 13.4 0.0 13 33 4 24 2 34 0.88 # 81893 # 82537 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_127 - 213 ATP-synt_ab PF00006.20 215 0.00079 12.2 0.1 1 1 9.3e-06 0.0012 11.6 0.1 13 48 47 82 42 189 0.71 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_127 - 213 DUF2791 PF10923.3 417 0.0002 13.3 0.1 1 1 2.7e-06 0.00035 12.5 0.0 26 84 27 84 23 113 0.84 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_49 - 519 Eco57I PF07669.6 106 1e-06 22.4 0.1 1 2 2.1e-07 2.7e-05 17.8 0.0 3 104 294 406 290 408 0.82 # 44909 # 46465 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.492 1_49 - 519 Eco57I PF07669.6 106 1e-06 22.4 0.1 2 2 0.026 3.4 1.4 0.1 54 85 412 444 409 455 0.80 # 44909 # 46465 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.492 1_89 - 215 AAA_19 PF13245.1 76 0.0005 13.1 1.1 1 1 2.1e-05 0.0014 11.7 0.1 15 35 7 26 4 50 0.84 # 81893 # 82537 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_4 - 419 AAA_19 PF13245.1 76 0.00094 12.2 0.0 1 1 3e-05 0.0019 11.2 0.0 22 58 36 70 20 94 0.79 # 1692 # 2948 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 1_127 - 213 AAA_10 PF12846.2 304 4.1e-06 19.6 0.4 1 2 3.2e-06 0.00021 14.1 0.0 6 36 54 85 51 103 0.83 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_127 - 213 AAA_10 PF12846.2 304 4.1e-06 19.6 0.4 2 2 0.0038 0.24 4.0 0.1 216 260 140 184 94 191 0.77 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_80 - 639 AAA_10 PF12846.2 304 0.023 7.3 7.1 1 2 0.00076 0.049 6.3 1.0 9 24 41 59 39 267 0.89 # 71883 # 73799 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_80 - 639 AAA_10 PF12846.2 304 0.023 7.3 7.1 2 2 0.0035 0.23 4.1 0.5 101 261 467 616 347 629 0.77 # 71883 # 73799 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_80 - 639 SbcCD_C PF13558.1 90 1.3e-07 24.7 0.1 1 1 2.6e-09 3.3e-07 23.5 0.1 12 89 532 601 524 602 0.86 # 71883 # 73799 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_47 - 1041 ResIII PF04851.10 184 8.2e-35 113.5 0.2 1 1 3.7e-36 2.4e-34 112.0 0.2 4 183 273 440 270 441 0.91 # 40449 # 43571 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.476 1_124 - 520 ResIII PF04851.10 184 8.7e-18 58.0 0.0 1 1 2.5e-19 1.6e-17 57.1 0.0 26 183 112 268 97 269 0.82 # 105725 # 107284 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_49 - 519 Methyltransf_31 PF13847.1 152 0.00012 15.0 0.0 1 1 2.6e-06 0.00034 13.5 0.0 3 81 217 313 215 381 0.63 # 44909 # 46465 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.492 1_127 - 213 DUF2075 PF09848.4 352 8.5e-05 14.9 0.1 1 2 1.7e-06 0.00021 13.5 0.0 3 28 51 76 49 107 0.81 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_127 - 213 DUF2075 PF09848.4 352 8.5e-05 14.9 0.1 2 2 0.067 8.6 -1.6 0.0 207 243 166 201 147 209 0.69 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_124 - 520 DEAD PF00270.24 169 1.2e-13 44.1 0.1 1 2 2.4e-13 1e-11 37.9 0.0 2 163 99 268 98 275 0.71 # 105725 # 107284 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_124 - 520 DEAD PF00270.24 169 1.2e-13 44.1 0.1 2 2 0.011 0.47 3.2 0.0 64 102 384 425 376 428 0.76 # 105725 # 107284 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_47 - 1041 DEAD PF00270.24 169 8.9e-09 28.3 0.0 1 1 5.3e-10 2.3e-08 27.0 0.0 21 142 308 425 289 442 0.73 # 40449 # 43571 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.476 1_4 - 419 DEAD PF00270.24 169 0.00028 13.7 0.0 1 1 2.2e-05 0.00096 11.9 0.0 25 132 35 130 14 154 0.76 # 1692 # 2948 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 1_33 - 222 CmcI PF04989.7 206 0.00032 13.3 0.0 1 1 3.5e-06 0.00046 12.8 0.0 46 115 15 87 2 99 0.79 # 30549 # 31214 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_127 - 213 DUF815 PF05673.8 250 1.6e-05 17.2 0.0 1 1 1.9e-07 2.4e-05 16.6 0.0 32 104 30 100 8 106 0.83 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_101 - 562 Methyltransf_27 PF13708.1 194 1.4e-45 148.5 2.7 1 2 3.1e-47 4e-45 147.0 2.3 3 194 87 300 85 300 0.91 # 91819 # 93504 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_101 - 562 Methyltransf_27 PF13708.1 194 1.4e-45 148.5 2.7 2 2 0.082 11 -1.2 0.0 107 135 347 375 330 385 0.77 # 91819 # 93504 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_89 - 215 CPT PF07931.7 174 0.00069 12.5 0.0 1 1 1.1e-05 0.0014 11.5 0.0 7 44 8 45 5 79 0.85 # 81893 # 82537 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_127 - 213 Sigma54_activ_2 PF14532.1 138 2.6e-05 17.6 0.0 1 1 3.3e-07 4.3e-05 16.9 0.0 10 95 38 143 33 192 0.70 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_4 - 419 Terminase_3 PF04466.8 387 9.8e-08 24.6 0.0 1 2 2.1e-09 2.7e-07 23.2 0.0 2 123 24 143 23 161 0.91 # 1692 # 2948 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 1_4 - 419 Terminase_3 PF04466.8 387 9.8e-08 24.6 0.0 2 2 0.08 10 -1.8 0.0 343 385 363 402 340 404 0.64 # 1692 # 2948 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 1_101 - 562 TIGR00755 TIGR00755 256 0.00011 14.5 0.0 1 1 2e-06 0.00025 13.3 0.0 8 106 399 494 392 507 0.84 # 91819 # 93504 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_127 - 213 ArgK PF03308.11 267 1.9e-05 16.8 0.0 1 1 2.4e-07 3.1e-05 16.1 0.0 26 63 46 83 15 89 0.87 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_127 - 213 PIF1 PF05970.9 364 5.1e-05 15.6 0.0 1 1 6.3e-07 8.2e-05 14.9 0.0 18 55 45 82 31 85 0.86 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_127 - 213 RNA_helicase PF00910.17 107 0.00012 15.5 0.1 1 1 5.2e-06 0.00067 13.1 0.1 1 25 52 76 52 118 0.83 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_127 - 213 UPF0079 PF02367.12 123 6e-06 19.2 0.0 1 1 9.4e-08 1.2e-05 18.2 0.0 9 47 43 82 36 87 0.87 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_4 - 419 Terminase_GpA PF05876.7 557 3.5e-05 15.5 0.0 1 1 4.5e-07 5.8e-05 14.8 0.0 34 149 25 132 10 136 0.78 # 1692 # 2948 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 1_127 - 213 NACHT PF05729.7 166 4.5e-05 16.4 0.0 1 1 1.6e-06 0.0001 15.2 0.0 2 31 51 80 50 110 0.83 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_89 - 215 NACHT PF05729.7 166 0.00087 12.2 0.0 1 1 3e-05 0.0019 11.1 0.0 4 20 6 22 3 26 0.87 # 81893 # 82537 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_21 - 197 Lambda_tail_I PF06805.7 82 0.00044 13.4 0.0 1 1 8.1e-06 0.001 12.2 0.0 5 82 7 96 4 96 0.85 # 17420 # 18010 # 1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_37 - 447 AAA_25 PF13481.1 194 2.1e-13 43.3 0.1 1 1 3.1e-14 1e-12 41.1 0.0 14 193 189 372 175 373 0.77 # 33360 # 34700 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.548 1_66 - 359 AAA_25 PF13481.1 194 5.2e-07 22.5 0.0 1 1 7.4e-08 2.4e-06 20.3 0.0 13 157 27 157 18 216 0.68 # 62561 # 63637 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_80 - 639 AAA_25 PF13481.1 194 6.9e-05 15.6 0.4 1 1 1.3e-05 0.00041 13.1 0.0 39 139 39 137 29 143 0.71 # 71883 # 73799 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_127 - 213 AAA_25 PF13481.1 194 0.00026 13.7 0.1 1 2 0.00011 0.0034 10.0 0.0 19 50 31 66 15 88 0.76 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_127 - 213 AAA_25 PF13481.1 194 0.00026 13.7 0.1 2 2 0.046 1.5 1.4 0.1 165 185 162 182 144 186 0.80 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_124 - 520 SNF2_N PF00176.18 299 2.3e-05 16.5 0.0 1 1 2.9e-07 3.8e-05 15.8 0.0 105 182 185 277 168 285 0.82 # 105725 # 107284 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_89 - 215 AAA_28 PF13521.1 163 7.1e-11 35.6 0.0 1 1 7.9e-13 1e-10 35.1 0.0 1 98 4 98 4 157 0.81 # 81893 # 82537 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_66 - 359 Rad51 PF08423.6 256 5.4e-05 15.4 0.0 1 2 5.7e-06 0.00073 11.7 0.0 32 84 45 91 27 135 0.86 # 62561 # 63637 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_66 - 359 Rad51 PF08423.6 256 5.4e-05 15.4 0.0 2 2 0.0078 1 1.4 0.0 169 207 195 230 161 262 0.78 # 62561 # 63637 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_58 - 412 AAA_5 PF07728.9 139 1.6e-17 56.8 0.0 1 1 2.2e-19 2.9e-17 56.0 0.0 4 126 173 293 172 309 0.92 # 53205 # 54440 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.526 1_127 - 213 APS_kinase PF01583.15 157 5.3e-07 22.7 0.0 1 1 8.3e-09 1.1e-06 21.7 0.0 1 37 48 84 48 103 0.91 # 108712 # 109350 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0a89d0d5-3bd9-4a2b-a154-4d1e1f2d097a # Target file: checkm_output/bins/pm313/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm313/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0a89d0d5-3bd9-4a2b-a154-4d1e1f2d097a checkm_output/bins/pm313/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:04:41 2020 # [ok]