# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_72 - 215 UPF0020 PF01170.13 180 7e-06 18.5 0.0 1 2 0.00028 0.026 6.9 0.0 102 118 16 32 3 49 0.79 # 62889 # 63533 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_72 - 215 UPF0020 PF01170.13 180 7e-06 18.5 0.0 2 2 4.2e-05 0.004 9.5 0.0 26 46 161 181 156 204 0.81 # 62889 # 63533 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_79 - 265 MipZ PF09140.6 261 2.7e-10 32.5 0.5 1 3 3.8e-09 3.6e-07 22.3 0.0 1 40 5 44 5 51 0.94 # 68072 # 68866 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.414 1_79 - 265 MipZ PF09140.6 261 2.7e-10 32.5 0.5 2 3 0.00018 0.017 6.9 0.0 83 128 109 154 83 158 0.78 # 68072 # 68866 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.414 1_79 - 265 MipZ PF09140.6 261 2.7e-10 32.5 0.5 3 3 0.037 3.5 -0.6 0.0 77 118 185 226 165 230 0.78 # 68072 # 68866 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.414 1_79 - 265 YhjQ PF06564.7 244 6.5e-07 21.7 0.0 1 1 1.3e-08 1.2e-06 20.8 0.0 9 151 12 158 5 167 0.86 # 68072 # 68866 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.414 1_68 - 560 Methyltransf_18 PF12847.2 112 1.4e-05 18.5 0.0 1 1 4.1e-07 3.9e-05 17.1 0.0 19 108 438 515 424 518 0.85 # 58773 # 60452 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_5 - 732 DUF87 PF01935.12 229 0.00017 14.2 0.0 1 1 3.2e-06 0.0003 13.4 0.0 13 38 128 152 115 155 0.78 # 2119 # 4314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.635 1_45 - 508 AAA_22 PF13401.1 131 4.3e-06 19.7 0.0 1 1 1.1e-07 1.1e-05 18.5 0.0 4 57 219 270 213 296 0.82 # 40727 # 42250 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.618 1_68 - 560 Methyltransf_11 PF08241.7 95 4.4e-05 16.8 0.0 1 1 2e-06 0.00019 14.8 0.0 8 93 436 514 429 516 0.78 # 58773 # 60452 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_72 - 215 N6_N4_Mtase PF01555.13 231 1.2e-35 115.8 0.0 1 1 1.3e-34 1.2e-32 106.0 0.0 1 226 21 198 21 202 0.88 # 62889 # 63533 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_79 - 265 ArsA_ATPase PF02374.10 305 2.7e-08 26.0 0.5 1 1 6.6e-10 6.2e-08 24.8 0.2 5 49 9 53 5 135 0.86 # 68072 # 68866 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.414 1_45 - 508 T2SE PF00437.15 272 3.3e-36 117.3 0.1 1 1 1e-37 4.8e-36 116.8 0.1 11 270 91 368 84 370 0.85 # 40727 # 42250 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.618 1_36 - 389 T2SE PF00437.15 272 1.8e-22 72.3 0.0 1 1 9.2e-24 4.3e-22 71.0 0.0 8 264 26 299 21 309 0.75 # 31572 # 32738 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.651 1_94 - 87 Cytidylate_kin2 PF13189.1 179 0.0002 14.1 0.1 1 1 2.1e-06 0.0002 14.1 0.1 108 146 42 82 7 86 0.83 # 78448 # 78708 # -1 # ID=1_94;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.479 1_79 - 265 VirC1 PF07015.6 231 2.1e-05 16.5 0.3 1 2 2e-06 0.00019 13.4 0.1 3 42 6 45 5 51 0.89 # 68072 # 68866 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.414 1_79 - 265 VirC1 PF07015.6 231 2.1e-05 16.5 0.3 2 2 0.014 1.3 0.8 0.0 69 137 111 178 103 214 0.73 # 68072 # 68866 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.414 1_45 - 508 Kinesin PF00225.18 335 0.00071 11.1 0.0 1 1 1.2e-05 0.0011 10.4 0.0 64 94 208 238 194 253 0.91 # 40727 # 42250 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.618 1_79 - 265 CbiA PF01656.18 195 1.1e-28 92.8 0.4 1 1 1.4e-30 1.3e-28 92.5 0.4 1 189 7 218 7 224 0.70 # 68072 # 68866 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.414 1_18 - 1017 AAA_29 PF13555.1 62 0.00073 11.9 0.0 1 1 1.8e-05 0.0017 10.8 0.0 22 43 494 515 485 531 0.77 # 14190 # 17240 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_68 - 560 N6_Mtase PF02384.11 311 0.00081 11.3 0.0 1 1 1.7e-05 0.0016 10.3 0.0 113 138 471 495 454 522 0.76 # 58773 # 60452 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_58 - 116 NNMT_PNMT_TEMT PF01234.12 256 0.00044 12.1 0.0 1 1 5.3e-06 0.0005 11.9 0.0 73 113 16 57 12 94 0.84 # 53404 # 53751 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_18 - 1017 DUF258 PF03193.11 161 0.00016 13.7 0.0 1 1 3.9e-06 0.00036 12.5 0.0 32 54 492 514 475 526 0.84 # 14190 # 17240 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_5 - 732 TraG-D_C PF12696.2 128 7.3e-07 22.0 0.0 1 1 1.6e-08 1.5e-06 20.9 0.0 2 100 440 539 439 562 0.71 # 2119 # 4314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.635 1_79 - 265 AAA_31 PF13614.1 157 4.1e-13 42.4 0.4 1 1 2.9e-14 2.7e-12 39.7 0.4 2 152 6 158 5 162 0.79 # 68072 # 68866 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.414 1_68 - 560 Methyltransf_26 PF13659.1 117 3.7e-14 45.6 0.2 1 1 1.7e-15 8e-14 44.5 0.2 2 117 426 520 425 520 0.88 # 58773 # 60452 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_72 - 215 Methyltransf_26 PF13659.1 117 1.3e-11 37.4 0.1 1 2 1.7e-07 7.8e-06 18.8 0.0 53 113 3 70 2 74 0.72 # 62889 # 63533 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_72 - 215 Methyltransf_26 PF13659.1 117 1.3e-11 37.4 0.1 2 2 7.6e-07 3.6e-05 16.6 0.1 4 46 167 208 164 214 0.80 # 62889 # 63533 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_45 - 508 AAA_30 PF13604.1 196 5.1e-06 19.0 0.1 1 1 3e-07 1.4e-05 17.6 0.0 4 44 205 245 202 288 0.82 # 40727 # 42250 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.618 1_5 - 732 AAA_30 PF13604.1 196 9.2e-05 14.9 2.1 1 2 0.021 1 1.7 0.0 21 35 140 154 131 161 0.82 # 2119 # 4314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.635 1_5 - 732 AAA_30 PF13604.1 196 9.2e-05 14.9 2.1 2 2 3.1e-05 0.0014 11.0 0.0 95 189 435 531 392 536 0.75 # 2119 # 4314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.635 1_5 - 732 FtsK_SpoIIIE PF01580.13 205 0.00029 13.2 0.0 1 2 1.8e-05 0.0017 10.6 0.0 27 55 125 154 117 162 0.83 # 2119 # 4314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.635 1_5 - 732 FtsK_SpoIIIE PF01580.13 205 0.00029 13.2 0.0 2 2 0.082 7.7 -1.3 0.0 180 202 453 475 430 481 0.85 # 2119 # 4314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.635 1_68 - 560 MTS PF05175.9 170 2.9e-07 22.8 0.0 1 1 5.5e-09 5.2e-07 22.0 0.0 76 139 458 517 411 529 0.71 # 58773 # 60452 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_72 - 215 Cons_hypoth95 PF03602.10 183 9.4e-05 14.7 0.0 1 2 0.00051 0.048 5.8 0.0 112 127 18 33 3 78 0.81 # 62889 # 63533 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_72 - 215 Cons_hypoth95 PF03602.10 183 9.4e-05 14.7 0.0 2 2 0.00025 0.023 6.9 0.0 42 58 163 179 145 185 0.83 # 62889 # 63533 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_18 - 1017 AAA_10 PF12846.2 304 1.8e-29 95.9 0.0 1 1 5.6e-31 2.6e-29 95.4 0.0 3 303 497 896 495 897 0.83 # 14190 # 17240 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_5 - 732 AAA_10 PF12846.2 304 6e-08 25.2 0.1 1 1 2.9e-09 1.3e-07 24.1 0.1 2 293 138 508 137 519 0.65 # 2119 # 4314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.635 1_68 - 560 Methyltransf_31 PF13847.1 152 0.0004 12.8 0.0 1 1 7.4e-06 0.0007 12.0 0.0 9 112 430 520 422 538 0.77 # 58773 # 60452 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_12 - 68 UBX PF00789.15 82 0.00063 12.7 0.2 1 1 8e-06 0.00075 12.4 0.1 21 57 11 45 8 63 0.85 # 10469 # 10672 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 1_68 - 560 Methyltransf_27 PF13708.1 194 2.6e-45 147.1 0.1 1 1 4e-47 3.7e-45 146.6 0.1 3 194 97 282 95 282 0.90 # 58773 # 60452 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_5 - 732 TrwB_AAD_bind PF10412.4 386 1.1e-10 33.5 0.1 1 3 4e-07 3.7e-05 15.2 0.0 11 52 133 174 127 180 0.86 # 2119 # 4314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.635 1_5 - 732 TrwB_AAD_bind PF10412.4 386 1.1e-10 33.5 0.1 2 3 0.0034 0.32 2.3 0.0 91 144 237 289 226 331 0.68 # 2119 # 4314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.635 1_5 - 732 TrwB_AAD_bind PF10412.4 386 1.1e-10 33.5 0.1 3 3 3.5e-06 0.00033 12.1 0.0 248 376 443 571 428 575 0.74 # 2119 # 4314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.635 1_94 - 87 Guanylate_kin PF00625.16 183 3.5e-05 16.1 0.1 1 1 4e-07 3.8e-05 16.0 0.1 92 145 26 81 10 85 0.82 # 78448 # 78708 # -1 # ID=1_94;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.479 1_5 - 732 T4SS-DNA_transf PF02534.9 469 8e-08 24.0 0.0 1 1 1.2e-09 1.1e-07 23.5 0.0 34 435 125 571 105 599 0.74 # 2119 # 4314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.635 1_68 - 560 TIGR00755 TIGR00755 256 0.0002 13.2 0.0 1 1 3.5e-06 0.00033 12.5 0.0 6 105 401 493 397 501 0.87 # 58773 # 60452 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_45 - 508 AAA_25 PF13481.1 194 0.00028 13.1 0.1 1 1 2.1e-05 0.00099 11.3 0.0 14 51 199 237 190 331 0.79 # 40727 # 42250 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.618 1_36 - 389 AAA_25 PF13481.1 194 0.00078 11.7 0.1 1 1 4.4e-05 0.0021 10.3 0.0 29 53 153 177 125 194 0.82 # 31572 # 32738 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.651 1_72 - 215 Methyltransf_15 PF09445.5 164 0.00062 12.2 0.0 1 2 0.065 6.1 -0.8 0.0 53 80 4 30 3 37 0.90 # 62889 # 63533 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_72 - 215 Methyltransf_15 PF09445.5 164 0.00062 12.2 0.0 2 2 2.8e-05 0.0026 10.1 0.0 3 32 166 195 164 204 0.88 # 62889 # 63533 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9cf6bb74-a026-420a-8777-241c913ffdea # Target file: checkm_output/bins/pm31/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm31/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9cf6bb74-a026-420a-8777-241c913ffdea checkm_output/bins/pm31/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:04:40 2020 # [ok]