# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_28 - 372 ATP_bind_3 PF01171.15 182 0.00028 14.2 0.0 1 2 5.2e-05 0.0099 9.2 0.0 1 59 52 110 52 129 0.78 # 14378 # 15493 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 3_28 - 372 ATP_bind_3 PF01171.15 182 0.00028 14.2 0.0 2 2 0.005 0.95 2.7 0.0 134 161 232 260 207 262 0.72 # 14378 # 15493 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_14 - 347 Seryl_tRNA_N PF02403.17 108 0.049 7.5 46.3 1 5 0.019 3.5 1.5 8.8 39 98 89 152 77 158 0.72 # 13043 # 14083 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_14 - 347 Seryl_tRNA_N PF02403.17 108 0.049 7.5 46.3 2 5 0.00084 0.16 5.9 3.1 50 100 146 196 143 199 0.89 # 13043 # 14083 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_14 - 347 Seryl_tRNA_N PF02403.17 108 0.049 7.5 46.3 3 5 2.6e-06 0.00049 13.9 12.2 19 100 216 294 201 297 0.85 # 13043 # 14083 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_14 - 347 Seryl_tRNA_N PF02403.17 108 0.049 7.5 46.3 4 5 0.00031 0.058 7.3 2.1 62 105 284 327 282 330 0.90 # 13043 # 14083 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_14 - 347 Seryl_tRNA_N PF02403.17 108 0.049 7.5 46.3 5 5 0.0059 1.1 3.1 1.6 82 105 304 327 296 345 0.51 # 13043 # 14083 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_91 - 262 MipZ PF09140.6 261 3.4e-10 33.2 0.0 1 2 6.6e-10 1.2e-07 24.8 0.0 2 52 4 55 3 81 0.83 # 77591 # 78376 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_91 - 262 MipZ PF09140.6 261 3.4e-10 33.2 0.0 2 2 0.00031 0.059 6.2 0.0 89 122 117 150 89 166 0.74 # 77591 # 78376 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 2_33 - 562 3HCDH_N PF02737.13 180 0.0057 10.1 6.7 1 2 0.0025 0.47 3.9 2.5 1 30 100 129 100 133 0.93 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 3HCDH_N PF02737.13 180 0.0057 10.1 6.7 2 2 0.00014 0.027 7.9 0.1 2 36 273 307 272 359 0.71 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 GIDA PF01134.17 392 3.9e-06 19.7 2.9 1 4 2.1e-08 3.9e-06 19.7 2.9 1 52 100 153 100 166 0.88 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 GIDA PF01134.17 392 3.9e-06 19.7 2.9 2 4 0.074 14 -1.9 0.0 3 32 274 303 272 335 0.85 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 GIDA PF01134.17 392 3.9e-06 19.7 2.9 3 4 0.067 13 -1.7 0.0 128 167 339 363 311 382 0.57 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 GIDA PF01134.17 392 3.9e-06 19.7 2.9 4 4 0.03 5.7 -0.6 0.0 350 385 391 426 382 430 0.76 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 1_36 - 176 SSB PF00436.20 104 2.3e-41 133.7 0.3 1 1 1.5e-43 2.9e-41 133.4 0.3 1 104 5 109 5 109 0.99 # 27093 # 27620 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.547 2_12 - 504 UvrD_C_2 PF13538.1 104 1.4e-10 35.0 0.0 1 1 3.5e-12 6.6e-10 32.9 0.0 46 99 393 463 352 467 0.67 # 11245 # 12756 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_33 - 562 Pyr_redox_2 PF07992.9 201 1.5e-41 136.3 0.0 1 1 2.8e-43 5.3e-41 134.5 0.0 1 199 100 407 100 409 0.96 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 1_72 - 622 DUF87 PF01935.12 229 1.6e-08 28.4 0.0 1 1 4.3e-10 4e-08 27.1 0.0 24 63 173 211 168 269 0.87 # 60319 # 62184 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_50 - 816 DUF87 PF01935.12 229 7e-08 26.3 0.2 1 1 1.5e-09 1.4e-07 25.3 0.2 24 154 452 587 432 660 0.71 # 39227 # 41674 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 2_12 - 504 AAA_22 PF13401.1 131 6.1e-05 17.0 0.0 1 2 8e-05 0.005 10.8 0.0 8 68 23 92 17 122 0.63 # 11245 # 12756 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_12 - 504 AAA_22 PF13401.1 131 6.1e-05 17.0 0.0 2 2 0.015 0.94 3.4 0.0 82 124 189 225 164 229 0.77 # 11245 # 12756 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_38 - 323 AAA_22 PF13401.1 131 0.00023 15.1 0.0 1 1 7.8e-06 0.00049 14.1 0.0 5 54 62 103 56 164 0.76 # 28602 # 29570 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_72 - 622 AAA_22 PF13401.1 131 0.00024 15.1 0.0 1 1 1.2e-05 0.00078 13.4 0.0 3 68 171 231 166 287 0.83 # 60319 # 62184 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_19 - 542 DNA_methylase PF00145.12 335 1.2e-28 94.0 0.0 1 1 6.3e-30 5.9e-28 91.7 0.0 3 333 126 441 124 443 0.77 # 14075 # 15700 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_80 - 476 DNA_methylase PF00145.12 335 1.1e-10 34.9 0.0 1 2 4.1e-11 3.9e-09 29.8 0.0 71 160 228 320 199 324 0.83 # 70779 # 72206 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_80 - 476 DNA_methylase PF00145.12 335 1.1e-10 34.9 0.0 2 2 0.0061 0.58 2.9 0.0 290 330 407 448 341 452 0.73 # 70779 # 72206 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_77 - 93 Ribosomal_L2_C PF03947.13 130 0.00094 12.8 0.0 1 1 6.3e-06 0.0012 12.5 0.0 74 111 44 80 24 82 0.86 # 68939 # 69217 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.441 1_38 - 323 AAA_3 PF07726.6 131 0.00013 15.4 0.0 1 1 1.1e-06 0.00021 14.7 0.0 3 114 65 188 63 212 0.80 # 28602 # 29570 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 2_33 - 562 NAD_binding_7 PF13241.1 103 1.6e-05 18.9 2.1 1 2 6.2e-05 0.012 9.7 0.1 9 38 100 129 97 164 0.90 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 NAD_binding_7 PF13241.1 103 1.6e-05 18.9 2.1 2 2 0.00024 0.046 7.8 0.1 8 41 271 307 264 384 0.68 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 1_28 - 295 N6_N4_Mtase PF01555.13 231 7.5e-09 29.2 0.1 1 2 1.7e-06 0.00032 14.0 0.0 180 223 28 72 4 76 0.84 # 18828 # 19712 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_28 - 295 N6_N4_Mtase PF01555.13 231 7.5e-09 29.2 0.1 2 2 3.5e-06 0.00066 13.0 0.1 2 172 90 267 89 283 0.72 # 18828 # 19712 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_38 - 323 AAA_17 PF13207.1 121 4.8e-05 18.0 0.0 1 1 5.5e-07 0.0001 16.9 0.0 3 27 65 89 64 166 0.90 # 28602 # 29570 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_72 - 622 MobB PF03205.9 140 0.00098 12.6 0.0 1 1 1.7e-05 0.0033 10.9 0.0 4 34 176 206 175 214 0.90 # 60319 # 62184 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_91 - 262 ArsA_ATPase PF02374.10 305 1.1e-05 18.4 0.0 1 2 3e-07 5.7e-05 16.0 0.0 7 40 9 43 2 79 0.84 # 77591 # 78376 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_91 - 262 ArsA_ATPase PF02374.10 305 1.1e-05 18.4 0.0 2 2 0.029 5.4 -0.3 0.0 124 136 124 136 106 143 0.79 # 77591 # 78376 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 2_12 - 504 PhoH PF02562.11 205 4.8e-06 19.7 0.2 1 2 0.0013 0.25 4.3 0.0 22 45 22 45 4 61 0.78 # 11245 # 12756 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_12 - 504 PhoH PF02562.11 205 4.8e-06 19.7 0.2 2 2 7.5e-06 0.0014 11.7 0.0 122 168 196 240 193 255 0.83 # 11245 # 12756 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_38 - 323 T2SE PF00437.15 272 6.6e-05 15.7 0.0 1 1 1.6e-06 0.00015 14.5 0.0 105 148 40 81 9 100 0.77 # 28602 # 29570 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_72 - 622 T2SE PF00437.15 272 0.00034 13.3 0.0 1 1 5.9e-06 0.00055 12.6 0.0 116 162 163 206 124 227 0.78 # 60319 # 62184 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 2_33 - 562 NAD_binding_8 PF13450.1 68 0.00013 15.8 1.2 1 2 6.9e-07 0.00013 15.8 1.2 1 35 103 136 103 155 0.91 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 NAD_binding_8 PF13450.1 68 0.00013 15.8 1.2 2 2 0.091 17 -0.6 0.1 1 25 275 299 275 304 0.78 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 F420_oxidored PF03807.12 96 0.025 8.9 6.4 1 3 0.0019 0.36 5.2 1.1 2 33 101 128 100 132 0.87 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 F420_oxidored PF03807.12 96 0.025 8.9 6.4 2 3 0.0046 0.87 3.9 0.2 1 35 272 302 272 338 0.90 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 F420_oxidored PF03807.12 96 0.025 8.9 6.4 3 3 0.082 15 -0.1 0.0 23 52 351 381 341 388 0.78 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 3_28 - 372 TIGR02432 TIGR02432 189 7.6e-05 16.2 0.1 1 2 1.1e-05 0.002 11.5 0.0 1 58 52 109 52 119 0.85 # 14378 # 15493 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 3_28 - 372 TIGR02432 TIGR02432 189 7.6e-05 16.2 0.1 2 2 0.0084 1.6 2.1 0.0 140 165 235 260 207 262 0.76 # 14378 # 15493 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_38 - 323 Arch_ATPase PF01637.13 234 7.9e-05 16.2 0.0 1 1 7e-07 0.00013 15.5 0.0 4 44 45 85 43 94 0.91 # 28602 # 29570 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_38 - 323 AAA_16 PF13191.1 185 4.5e-05 17.3 0.8 1 1 2.2e-06 0.00014 15.7 0.0 7 48 47 85 42 102 0.79 # 28602 # 29570 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_50 - 816 AAA_16 PF13191.1 185 5.2e-05 17.1 0.2 1 1 4.8e-06 0.0003 14.6 0.2 20 63 447 490 439 659 0.64 # 39227 # 41674 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_78 - 206 AAA_16 PF13191.1 185 7.9e-05 16.5 0.1 1 1 1.9e-06 0.00012 15.9 0.1 27 68 11 54 3 168 0.79 # 69450 # 70067 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.516 2_14 - 347 AAA_13 PF13166.1 712 0.013 7.7 36.6 1 2 0.0019 0.36 2.9 28.3 283 457 85 259 71 272 0.58 # 13043 # 14083 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_14 - 347 AAA_13 PF13166.1 712 0.013 7.7 36.6 2 2 2.3e-05 0.0044 9.2 23.2 287 474 160 339 154 345 0.78 # 13043 # 14083 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_91 - 262 CbiA PF01656.18 195 2.2e-30 99.3 0.0 1 1 3e-32 2.8e-30 98.9 0.0 1 170 5 205 5 229 0.77 # 77591 # 78376 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_50 - 816 CbiA PF01656.18 195 0.00074 12.7 0.0 1 1 1.7e-05 0.0016 11.7 0.0 3 49 455 517 454 593 0.60 # 39227 # 41674 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 2_12 - 504 AAA_14 PF13173.1 128 3.1e-05 17.7 1.3 1 2 2.5e-05 0.0048 10.6 0.1 11 46 28 62 18 156 0.76 # 11245 # 12756 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_12 - 504 AAA_14 PF13173.1 128 3.1e-05 17.7 1.3 2 2 0.0011 0.21 5.3 0.0 51 99 176 227 127 241 0.73 # 11245 # 12756 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_33 - 562 HI0933_like PF03486.9 409 1.9e-08 26.9 5.3 1 2 9.7e-07 0.00018 13.8 2.9 2 33 100 131 99 139 0.91 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 HI0933_like PF03486.9 409 1.9e-08 26.9 5.3 2 2 1.7e-06 0.00032 13.0 0.0 83 164 286 363 281 384 0.86 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 1_38 - 323 AAA_29 PF13555.1 62 0.0022 11.3 1.0 1 1 2.7e-05 0.005 10.2 0.3 21 38 59 76 54 79 0.86 # 28602 # 29570 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 2_33 - 562 FAD_binding_2 PF00890.19 417 9.4e-06 18.4 5.5 1 3 5e-08 9.4e-06 18.4 5.5 2 32 101 131 100 138 0.91 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 FAD_binding_2 PF00890.19 417 9.4e-06 18.4 5.5 2 3 0.026 5 -0.4 0.6 146 204 315 366 300 385 0.69 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 FAD_binding_2 PF00890.19 417 9.4e-06 18.4 5.5 3 3 0.011 2.2 0.8 0.1 374 402 375 405 371 418 0.87 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 1_38 - 323 AAA PF00004.24 132 0.00064 13.7 0.1 1 1 7.4e-06 0.0014 12.6 0.1 2 33 65 96 64 149 0.83 # 28602 # 29570 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 2_12 - 504 UvrD_C PF13361.1 351 1.7e-10 34.6 0.0 1 1 1.7e-12 3.2e-10 33.7 0.0 238 347 359 468 334 472 0.76 # 11245 # 12756 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 3_28 - 372 PAPS_reduct PF01507.14 174 6.6e-12 39.4 0.4 1 2 0.028 2.6 1.6 0.0 2 17 53 68 52 91 0.76 # 14378 # 15493 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 3_28 - 372 PAPS_reduct PF01507.14 174 6.6e-12 39.4 0.4 2 2 8.8e-13 8.3e-11 35.8 0.1 58 172 154 279 145 281 0.85 # 14378 # 15493 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_15 - 818 PAPS_reduct PF01507.14 174 4.7e-05 17.0 0.0 1 1 2.1e-06 0.00019 15.0 0.0 3 151 69 256 67 261 0.69 # 9795 # 12248 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 2_33 - 562 Pyr_redox_3 PF13738.1 203 1.2e-18 61.7 0.1 1 3 3.1e-06 0.00057 13.7 0.1 167 199 98 130 70 144 0.84 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 Pyr_redox_3 PF13738.1 203 1.2e-18 61.7 0.1 2 3 6.4e-09 1.2e-06 22.5 0.0 115 201 219 304 172 306 0.78 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 Pyr_redox_3 PF13738.1 203 1.2e-18 61.7 0.1 3 3 1e-08 2e-06 21.8 0.0 88 155 316 378 308 431 0.85 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 1_88 - 212 N6_Mtase PF02384.11 311 7e-07 22.3 0.0 1 1 5.9e-09 1.1e-06 21.7 0.0 3 97 71 166 69 201 0.72 # 75397 # 76032 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_72 - 622 TraG-D_C PF12696.2 128 5.4e-15 49.2 0.0 1 1 1e-16 9.6e-15 48.4 0.0 1 124 471 595 471 599 0.83 # 60319 # 62184 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_50 - 816 TraG-D_C PF12696.2 128 1.7e-06 21.8 0.0 1 1 4e-08 3.8e-06 20.6 0.0 17 75 674 728 656 734 0.84 # 39227 # 41674 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_91 - 262 AAA_31 PF13614.1 157 2.5e-10 34.3 0.0 1 1 2.6e-12 5e-10 33.3 0.0 1 149 3 157 3 165 0.79 # 77591 # 78376 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_36 - 176 AAA_33 PF13671.1 143 0.0011 12.7 0.0 1 1 8.6e-06 0.0016 12.1 0.0 26 102 33 104 23 109 0.75 # 27093 # 27620 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.547 2_12 - 504 AAA_30 PF13604.1 196 9.2e-08 25.7 0.1 1 2 9.2e-07 0.00017 15.0 0.0 19 80 20 81 11 109 0.77 # 11245 # 12756 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_12 - 504 AAA_30 PF13604.1 196 9.2e-08 25.7 0.1 2 2 0.00017 0.033 7.5 0.0 115 133 211 229 174 278 0.75 # 11245 # 12756 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_72 - 622 FtsK_SpoIIIE PF01580.13 205 1.6e-07 24.8 0.0 1 2 3.8e-08 2.4e-06 20.9 0.0 36 81 168 211 136 234 0.79 # 60319 # 62184 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_72 - 622 FtsK_SpoIIIE PF01580.13 205 1.6e-07 24.8 0.0 2 2 0.042 2.6 1.2 0.0 176 204 481 509 472 510 0.86 # 60319 # 62184 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_50 - 816 FtsK_SpoIIIE PF01580.13 205 1.4e-06 21.7 0.1 1 1 6.7e-08 4.2e-06 20.1 0.1 33 84 446 495 401 698 0.67 # 39227 # 41674 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_78 - 206 FtsK_SpoIIIE PF01580.13 205 0.0014 11.9 0.2 1 1 7.1e-05 0.0044 10.3 0.0 34 53 4 23 1 28 0.83 # 69450 # 70067 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.516 1_38 - 323 ABC_tran PF00005.22 137 0.0013 12.8 0.0 1 1 1.3e-05 0.0025 11.9 0.0 11 46 61 96 55 117 0.85 # 28602 # 29570 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 2_33 - 562 K_oxygenase PF13434.1 341 7e-06 18.9 0.4 1 3 0.0064 1.2 1.7 0.3 189 223 97 129 86 132 0.76 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 K_oxygenase PF13434.1 341 7e-06 18.9 0.4 2 3 1.9e-06 0.00036 13.3 0.0 130 233 217 311 200 342 0.78 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 K_oxygenase PF13434.1 341 7e-06 18.9 0.4 3 3 0.019 3.6 0.1 0.0 129 160 333 366 313 378 0.68 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_12 - 504 AAA_19 PF13245.1 76 2.9e-09 30.4 0.0 1 1 8.4e-11 7.9e-09 29.0 0.0 8 75 18 77 12 78 0.88 # 11245 # 12756 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_38 - 323 AAA_19 PF13245.1 76 0.00029 14.4 0.1 1 1 7e-06 0.00066 13.3 0.1 10 35 61 86 51 112 0.76 # 28602 # 29570 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_50 - 816 AAA_10 PF12846.2 304 5.3e-59 193.9 0.2 1 1 9.5e-61 8.9e-59 193.1 0.2 1 296 451 729 451 738 0.93 # 39227 # 41674 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_72 - 622 AAA_10 PF12846.2 304 2e-18 60.6 0.2 1 1 5.7e-20 5.3e-18 59.2 0.2 2 299 173 549 172 553 0.71 # 60319 # 62184 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 2_33 - 562 FAD_oxidored PF12831.2 428 4.4e-06 19.7 4.0 1 2 2.3e-08 4.4e-06 19.7 4.0 2 41 101 139 100 159 0.83 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 FAD_oxidored PF12831.2 428 4.4e-06 19.7 4.0 2 2 0.021 3.9 0.2 0.0 85 119 306 339 260 364 0.71 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 DAO PF01266.19 358 1.7e-10 34.0 10.4 1 2 4.6e-08 8.7e-06 18.6 1.4 2 35 101 134 100 161 0.85 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 DAO PF01266.19 358 1.7e-10 34.0 10.4 2 2 1.1e-08 2.2e-06 20.6 0.9 151 205 314 367 302 479 0.80 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_12 - 504 ResIII PF04851.10 184 2e-06 21.5 0.0 1 1 5.5e-08 5.2e-06 20.2 0.0 23 75 17 69 7 107 0.78 # 11245 # 12756 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_72 - 622 ResIII PF04851.10 184 0.0002 15.0 0.0 1 1 4.2e-06 0.0004 14.0 0.0 23 57 170 206 129 214 0.74 # 60319 # 62184 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 2_14 - 347 DUF3584 PF12128.3 1201 0.031 5.3 51.1 1 2 0.0051 0.96 0.4 32.3 377 534 86 242 42 246 0.65 # 13043 # 14083 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_14 - 347 DUF3584 PF12128.3 1201 0.031 5.3 51.1 2 2 2e-05 0.0038 8.3 20.6 613 709 225 327 220 345 0.80 # 13043 # 14083 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_12 - 504 Viral_helicase1 PF01443.13 234 1.7e-10 34.6 0.0 1 3 1.4e-05 0.0027 11.0 0.0 2 49 23 73 22 87 0.67 # 11245 # 12756 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_12 - 504 Viral_helicase1 PF01443.13 234 1.7e-10 34.6 0.0 2 3 1.8e-05 0.0034 10.7 0.0 56 105 188 234 146 256 0.78 # 11245 # 12756 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_12 - 504 Viral_helicase1 PF01443.13 234 1.7e-10 34.6 0.0 3 3 5.2e-05 0.0098 9.2 0.0 176 227 404 462 344 467 0.75 # 11245 # 12756 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_72 - 622 DEAD PF00270.24 169 4.3e-05 16.8 0.0 1 1 4.4e-07 8.2e-05 15.9 0.0 13 52 171 208 159 231 0.85 # 60319 # 62184 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 2_33 - 562 Pyr_redox PF00070.22 80 3.1e-19 63.0 4.9 1 2 2.2e-06 0.00041 14.6 1.2 2 31 101 130 100 132 0.95 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 Pyr_redox PF00070.22 80 3.1e-19 63.0 4.9 2 2 3.3e-17 6.2e-15 49.2 0.1 1 70 272 340 272 351 0.90 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 1_72 - 622 DUF853 PF05872.7 504 1.6e-06 20.5 0.0 1 1 1.4e-08 2.6e-06 19.8 0.0 7 60 158 211 153 225 0.93 # 60319 # 62184 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_72 - 622 TrwB_AAD_bind PF10412.4 386 3.7e-19 62.3 0.0 1 2 8.9e-13 8.3e-11 34.8 0.0 10 54 167 211 161 314 0.70 # 60319 # 62184 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_72 - 622 TrwB_AAD_bind PF10412.4 386 3.7e-19 62.3 0.0 2 2 6.9e-10 6.5e-08 25.3 0.0 242 377 469 609 445 616 0.82 # 60319 # 62184 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_50 - 816 TrwB_AAD_bind PF10412.4 386 4.2e-08 25.9 0.0 1 2 1.5e-05 0.0014 11.1 0.0 6 72 442 517 438 520 0.85 # 39227 # 41674 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_50 - 816 TrwB_AAD_bind PF10412.4 386 4.2e-08 25.9 0.0 2 2 5.6e-06 0.00053 12.4 0.1 232 301 643 712 613 731 0.66 # 39227 # 41674 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 2_12 - 504 AAA_11 PF13086.1 236 5.4e-07 23.2 0.1 1 1 1.9e-08 3.5e-06 20.5 0.1 23 228 25 228 8 229 0.66 # 11245 # 12756 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_50 - 816 Guanylate_kin PF00625.16 183 0.00027 14.2 0.1 1 3 0.0039 0.73 3.0 0.0 3 26 452 475 450 503 0.86 # 39227 # 41674 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_50 - 816 Guanylate_kin PF00625.16 183 0.00027 14.2 0.1 2 3 0.0094 1.8 1.8 0.1 75 115 596 637 580 703 0.83 # 39227 # 41674 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_50 - 816 Guanylate_kin PF00625.16 183 0.00027 14.2 0.1 3 3 0.001 0.2 4.9 0.0 75 131 714 770 697 777 0.87 # 39227 # 41674 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_72 - 622 T4SS-DNA_transf PF02534.9 469 4.6e-05 15.9 0.0 1 2 5.2e-07 9.7e-05 14.8 0.0 37 115 168 249 125 365 0.73 # 60319 # 62184 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_72 - 622 T4SS-DNA_transf PF02534.9 469 4.6e-05 15.9 0.0 2 2 0.097 18 -2.6 0.0 328 389 494 555 474 572 0.74 # 60319 # 62184 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_72 - 622 ArgK PF03308.11 267 0.0002 13.9 0.0 1 1 1.8e-06 0.00035 13.2 0.0 12 68 158 209 153 214 0.88 # 60319 # 62184 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 3_28 - 372 tRNA_Me_trans PF03054.11 356 7.1e-05 15.2 0.0 1 2 1.1e-06 0.00022 13.6 0.0 2 71 52 122 51 144 0.74 # 14378 # 15493 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 3_28 - 372 tRNA_Me_trans PF03054.11 356 7.1e-05 15.2 0.0 2 2 0.042 7.8 -1.4 0.0 193 224 274 305 236 311 0.83 # 14378 # 15493 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_33 - 562 AlaDh_PNT_C PF01262.16 168 1.4e-06 21.8 4.6 1 2 1.5e-06 0.00029 14.2 1.3 3 50 81 128 79 131 0.91 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_33 - 562 AlaDh_PNT_C PF01262.16 168 1.4e-06 21.8 4.6 2 2 9.9e-05 0.019 8.3 0.1 19 63 269 313 260 359 0.86 # 29426 # 31111 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_12 - 504 UvrD-helicase PF00580.16 315 1e-16 54.9 3.9 1 2 2.9e-06 0.00054 13.1 0.1 2 38 8 44 7 64 0.81 # 11245 # 12756 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_12 - 504 UvrD-helicase PF00580.16 315 1e-16 54.9 3.9 2 2 3.4e-15 6.3e-13 42.4 0.3 236 305 161 239 46 246 0.72 # 11245 # 12756 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_50 - 816 AAA_25 PF13481.1 194 0.00064 12.9 0.0 1 1 2.5e-05 0.0016 11.6 0.0 36 86 454 494 447 532 0.82 # 39227 # 41674 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_91 - 262 AAA_25 PF13481.1 194 0.00073 12.7 0.0 1 1 1.8e-05 0.0011 12.1 0.0 42 91 12 51 11 134 0.78 # 77591 # 78376 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_72 - 622 AAA_25 PF13481.1 194 0.00074 12.7 0.0 1 1 3.7e-05 0.0023 11.1 0.0 20 137 159 265 145 272 0.78 # 60319 # 62184 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_38 - 323 AAA_5 PF07728.9 139 1.9e-18 60.4 0.0 1 1 1.6e-20 3e-18 59.7 0.0 2 125 64 188 63 197 0.94 # 28602 # 29570 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/366e9015-e011-4f63-b7a2-12dbe5456939 # Target file: checkm_output/bins/pm304/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm304/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/366e9015-e011-4f63-b7a2-12dbe5456939 checkm_output/bins/pm304/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:04:34 2020 # [ok]