# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_45 - 389 MipZ PF09140.6 261 1.7e-06 20.2 0.1 1 2 8.4e-08 8.4e-06 17.9 0.0 3 47 109 153 107 168 0.90 # 31688 # 32854 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 1_45 - 389 MipZ PF09140.6 261 1.7e-06 20.2 0.1 2 2 0.036 3.6 -0.6 0.0 88 128 224 264 198 274 0.77 # 31688 # 32854 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 3_16 - 150 UvrD_C_2 PF13538.1 104 0.00027 14.0 0.0 1 1 3.5e-06 0.00035 13.7 0.0 13 80 66 137 56 149 0.63 # 11189 # 11638 # 1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_45 - 389 ArsA_ATPase PF02374.10 305 1.7e-06 20.1 0.0 1 2 1.2e-06 0.00012 14.1 0.0 9 40 115 147 109 154 0.90 # 31688 # 32854 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 1_45 - 389 ArsA_ATPase PF02374.10 305 1.7e-06 20.1 0.0 2 2 0.0022 0.22 3.4 0.0 125 136 233 244 223 252 0.89 # 31688 # 32854 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 1_45 - 389 VirC1 PF07015.6 231 9.5e-06 17.7 0.1 1 2 2.5e-05 0.0025 9.8 0.0 4 42 109 147 107 153 0.91 # 31688 # 32854 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 1_45 - 389 VirC1 PF07015.6 231 9.5e-06 17.7 0.1 2 2 0.00053 0.053 5.4 0.0 100 139 251 290 217 321 0.72 # 31688 # 32854 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 1_45 - 389 CbiA PF01656.18 195 5.2e-33 107.0 0.0 1 1 7.1e-35 7.1e-33 106.5 0.0 1 188 109 333 109 340 0.76 # 31688 # 32854 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 1_45 - 389 AAA_31 PF13614.1 157 2.8e-06 20.2 0.1 1 2 7.8e-06 0.00078 12.3 0.0 2 49 108 155 107 179 0.86 # 31688 # 32854 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 1_45 - 389 AAA_31 PF13614.1 157 2.8e-06 20.2 0.1 2 2 0.0009 0.09 5.6 0.0 115 151 228 267 211 271 0.80 # 31688 # 32854 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 1_32 - 211 KH_4 PF13083.1 73 0.00032 13.3 0.0 1 2 0.027 2.7 0.7 0.0 19 42 11 33 3 35 0.76 # 21191 # 21823 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_32 - 211 KH_4 PF13083.1 73 0.00032 13.3 0.0 2 2 3.6e-05 0.0036 9.9 0.0 18 45 157 186 147 187 0.83 # 21191 # 21823 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_13 - 249 ATP-synt_ab PF00006.20 215 1e-60 197.8 0.0 1 1 2.6e-62 1.3e-60 197.4 0.0 47 215 3 167 1 167 0.99 # 7443 # 8189 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.511 1_12 - 188 ATP-synt_ab PF00006.20 215 2.8e-08 26.4 0.3 1 1 7.7e-10 3.8e-08 25.9 0.3 2 33 149 180 148 185 0.91 # 6871 # 7434 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.502 2_12 - 150 RA PF00788.18 93 0.00074 13.0 0.0 1 1 2.2e-05 0.0022 11.4 0.0 26 68 3 46 1 54 0.88 # 7633 # 8082 # 1 # ID=2_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/82e40dbd-21d4-4519-8691-b1e9f6ec23b9 # Target file: checkm_output/bins/pm3/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm3/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/82e40dbd-21d4-4519-8691-b1e9f6ec23b9 checkm_output/bins/pm3/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:04:31 2020 # [ok]