# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 254 UPF0020 PF01170.13 180 0.00027 14.7 0.0 1 1 5.2e-06 0.0013 12.5 0.0 16 126 88 185 76 221 0.68 # 822 # 1583 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_25 - 418 MipZ PF09140.6 261 1.1e-11 38.4 0.1 1 2 1.4e-08 3.4e-06 20.4 0.1 2 39 116 156 115 170 0.78 # 24716 # 25969 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_25 - 418 MipZ PF09140.6 261 1.1e-11 38.4 0.1 2 2 5.4e-07 0.00013 15.2 0.0 77 126 236 287 213 297 0.75 # 24716 # 25969 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_25 - 418 YhjQ PF06564.7 244 0.0018 11.8 0.2 1 2 0.00059 0.14 5.6 0.1 6 41 119 157 115 170 0.78 # 24716 # 25969 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_25 - 418 YhjQ PF06564.7 244 0.0018 11.8 0.2 2 2 0.002 0.48 3.8 0.0 115 149 257 291 233 297 0.83 # 24716 # 25969 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 5_6 - 565 3HCDH_N PF02737.13 180 0.0077 10.0 6.4 1 2 0.0047 1.1 2.9 2.4 1 30 99 128 99 134 0.93 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 3HCDH_N PF02737.13 180 0.0077 10.0 6.4 2 2 9e-05 0.022 8.6 0.1 2 39 272 309 271 348 0.73 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 GIDA PF01134.17 392 6.2e-08 26.0 6.6 1 3 3.5e-10 8.3e-08 25.5 3.3 2 187 100 279 99 302 0.72 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 GIDA PF01134.17 392 6.2e-08 26.0 6.6 2 3 0.038 9.1 -0.9 0.0 3 31 273 301 271 315 0.84 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 GIDA PF01134.17 392 6.2e-08 26.0 6.6 3 3 0.018 4.4 0.1 0.1 349 385 393 429 387 433 0.77 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_46 - 126 SSB PF00436.20 104 0.0012 12.8 0.1 1 2 3.3e-05 0.008 10.2 0.1 2 83 8 87 7 94 0.74 # 48905 # 49282 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_46 - 126 SSB PF00436.20 104 0.0012 12.8 0.1 2 2 0.033 8 0.6 0.0 43 60 92 109 88 112 0.83 # 48905 # 49282 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 2_2 - 254 Methyltransf_18 PF12847.2 112 3.5e-05 18.5 0.0 1 1 2.7e-07 6.5e-05 17.7 0.0 3 107 102 198 100 203 0.77 # 822 # 1583 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_44 - 595 UvrD_C_2 PF13538.1 104 2e-12 41.3 0.0 1 1 4e-14 4.8e-12 40.1 0.0 47 103 496 562 450 563 0.79 # 45796 # 47580 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_105 - 680 UvrD_C_2 PF13538.1 104 6.3e-11 36.5 0.0 1 1 1.7e-12 2e-10 34.9 0.0 40 104 520 607 486 607 0.81 # 98589 # 100628 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 5_6 - 565 Pyr_redox_2 PF07992.9 201 1.9e-43 142.8 0.0 1 1 3.2e-45 7.8e-43 140.8 0.0 2 199 100 410 99 412 0.96 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_48 - 353 AAA_2 PF07724.9 171 1.2e-05 19.5 0.0 1 1 1.1e-07 2.7e-05 18.3 0.0 5 83 98 177 95 184 0.74 # 50378 # 51436 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 2_2 - 254 MetW PF07021.7 193 0.00029 14.4 0.0 1 1 3.5e-06 0.00042 13.8 0.0 13 102 100 192 90 202 0.76 # 822 # 1583 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_4 - 564 MetW PF07021.7 193 0.0015 12.0 0.0 1 1 2.1e-05 0.0026 11.3 0.0 17 83 423 487 409 499 0.84 # 1399 # 3090 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_105 - 680 AAA_22 PF13401.1 131 1.9e-05 19.0 0.1 1 2 7.1e-05 0.017 9.4 0.0 4 65 17 75 13 100 0.79 # 98589 # 100628 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_105 - 680 AAA_22 PF13401.1 131 1.9e-05 19.0 0.1 2 2 0.00048 0.12 6.7 0.0 41 108 152 232 117 246 0.67 # 98589 # 100628 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 2_2 - 254 Methyltransf_11 PF08241.7 95 0.001 13.8 0.0 1 1 9.2e-06 0.0022 12.6 0.0 5 86 109 191 105 198 0.78 # 822 # 1583 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 5_6 - 565 DFP PF04127.10 185 0.0019 12.0 2.4 1 2 0.00039 0.095 6.4 0.4 28 51 105 128 99 156 0.83 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 DFP PF04127.10 185 0.0019 12.0 2.4 2 2 0.0014 0.33 4.7 0.1 32 53 281 302 276 336 0.77 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_120 - 476 DNA_methylase PF00145.12 335 7.8e-76 249.4 0.0 1 1 4.2e-78 1e-75 249.0 0.0 1 333 92 455 92 457 0.87 # 110498 # 111925 # -1 # ID=1_120;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 5_6 - 565 NAD_binding_7 PF13241.1 103 8.2e-07 23.4 1.2 1 2 5.4e-05 0.013 9.9 0.2 9 38 99 128 96 184 0.89 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 NAD_binding_7 PF13241.1 103 8.2e-07 23.4 1.2 2 2 1.4e-05 0.0034 11.8 0.1 8 41 270 306 264 380 0.74 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_25 - 418 ArsA_ATPase PF02374.10 305 1.5e-09 31.4 0.8 1 2 0.0076 1.8 1.6 0.0 214 274 14 76 6 87 0.78 # 24716 # 25969 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_25 - 418 ArsA_ATPase PF02374.10 305 1.5e-09 31.4 0.8 2 2 2.4e-10 5.8e-08 26.2 0.1 8 136 122 269 115 274 0.80 # 24716 # 25969 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_44 - 595 PhoH PF02562.11 205 7.5e-07 22.7 0.5 1 1 8.8e-08 2.1e-05 17.9 0.5 6 177 5 246 2 258 0.76 # 45796 # 47580 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 5_6 - 565 NAD_binding_8 PF13450.1 68 8.4e-05 16.7 1.2 1 2 3.5e-07 8.4e-05 16.7 1.2 1 35 102 135 102 155 0.90 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 NAD_binding_8 PF13450.1 68 8.4e-05 16.7 1.2 2 2 0.041 9.9 0.5 0.2 1 25 274 298 274 303 0.81 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 F420_oxidored PF03807.12 96 0.017 9.7 4.1 1 2 0.0023 0.56 4.9 1.2 2 31 100 126 99 131 0.87 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 F420_oxidored PF03807.12 96 0.017 9.7 4.1 2 2 0.0075 1.8 3.3 0.1 1 34 271 300 271 323 0.87 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_25 - 418 Fer4_NifH PF00142.13 273 0.00022 14.6 0.0 1 2 2.7e-06 0.00064 13.1 0.0 7 58 122 176 116 201 0.79 # 24716 # 25969 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_25 - 418 Fer4_NifH PF00142.13 273 0.00022 14.6 0.0 2 2 0.1 24 -1.9 0.0 30 65 324 358 321 391 0.61 # 24716 # 25969 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_25 - 418 CbiA PF01656.18 195 1.8e-22 73.8 0.0 1 1 1.1e-24 2.6e-22 73.3 0.0 1 178 117 348 117 365 0.73 # 24716 # 25969 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 5_6 - 565 HI0933_like PF03486.9 409 5.3e-08 25.8 3.7 1 2 1.2e-06 0.00029 13.5 2.5 2 33 99 130 98 138 0.91 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 HI0933_like PF03486.9 409 5.3e-08 25.8 3.7 2 2 7.2e-06 0.0017 10.9 0.0 82 164 284 366 276 385 0.83 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 FAD_binding_2 PF00890.19 417 1e-05 18.6 4.7 1 3 4.3e-08 1e-05 18.6 4.7 2 32 100 130 99 137 0.90 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 FAD_binding_2 PF00890.19 417 1e-05 18.6 4.7 2 3 0.034 8.3 -0.8 0.1 143 204 311 369 297 388 0.72 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 FAD_binding_2 PF00890.19 417 1e-05 18.6 4.7 3 3 0.074 18 -1.9 0.0 376 402 388 408 377 424 0.82 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_48 - 353 AAA PF00004.24 132 0.00052 14.4 0.0 1 1 4.7e-06 0.0011 13.3 0.0 1 74 99 178 99 237 0.73 # 50378 # 51436 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_44 - 595 UvrD_C PF13361.1 351 4.1e-42 139.0 0.0 1 1 6.3e-44 7.6e-42 138.1 0.0 2 348 254 564 253 567 0.86 # 45796 # 47580 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_105 - 680 UvrD_C PF13361.1 351 3.7e-22 73.3 0.0 1 2 0.0039 0.46 3.9 0.0 74 118 332 377 287 388 0.79 # 98589 # 100628 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_105 - 680 UvrD_C PF13361.1 351 3.7e-22 73.3 0.0 2 2 5.1e-22 6.2e-20 66.0 0.0 290 347 538 607 517 611 0.91 # 98589 # 100628 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_48 - 353 Sigma54_activat PF00158.21 168 0.0003 14.4 0.0 1 1 7.9e-06 0.0019 11.8 0.0 20 120 94 189 78 223 0.65 # 50378 # 51436 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 5_6 - 565 Pyr_redox_3 PF13738.1 203 3.1e-17 57.4 0.1 1 2 4.4e-14 1.1e-11 39.3 0.1 1 201 101 303 101 305 0.75 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 Pyr_redox_3 PF13738.1 203 3.1e-17 57.4 0.1 2 2 9e-07 0.00022 15.5 0.0 93 147 320 375 309 430 0.76 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_2 - 254 N6_Mtase PF02384.11 311 9e-09 28.9 0.0 1 2 7.6e-06 0.00091 12.5 0.0 55 136 109 176 79 180 0.60 # 822 # 1583 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 2_2 - 254 N6_Mtase PF02384.11 311 9e-09 28.9 0.0 2 2 4.4e-06 0.00052 13.3 0.0 161 200 179 219 176 245 0.76 # 822 # 1583 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_4 - 564 N6_Mtase PF02384.11 311 6.1e-06 19.6 0.0 1 1 8.8e-08 1.1e-05 18.8 0.0 89 138 445 492 425 504 0.88 # 1399 # 3090 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_25 - 418 AAA_31 PF13614.1 157 4.3e-08 27.4 0.2 1 2 9.4e-08 2.3e-05 18.5 0.0 9 128 123 270 121 292 0.83 # 24716 # 25969 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_25 - 418 AAA_31 PF13614.1 157 4.3e-08 27.4 0.2 2 2 0.00088 0.21 5.6 0.1 14 89 299 381 284 410 0.72 # 24716 # 25969 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 2_2 - 254 Methyltransf_26 PF13659.1 117 3.6e-13 43.8 0.1 1 1 1.2e-14 1.5e-12 41.7 0.0 1 115 101 201 101 207 0.81 # 822 # 1583 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_4 - 564 Methyltransf_26 PF13659.1 117 1e-08 29.4 0.0 1 1 1.9e-10 2.3e-08 28.2 0.0 3 116 422 516 418 517 0.80 # 1399 # 3090 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 12_3 - 252 FmrO PF07091.6 251 5.1e-82 268.7 0.0 1 1 2.4e-84 5.9e-82 268.5 0.0 1 251 12 246 12 246 0.98 # 1849 # 2604 # 1 # ID=12_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_44 - 595 AAA_30 PF13604.1 196 8.1e-05 16.4 0.3 1 2 2.9e-05 0.0035 11.1 0.0 4 66 6 66 4 90 0.72 # 45796 # 47580 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_44 - 595 AAA_30 PF13604.1 196 8.1e-05 16.4 0.3 2 2 0.018 2.1 2.0 0.0 91 132 187 227 162 261 0.83 # 45796 # 47580 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_105 - 680 AAA_30 PF13604.1 196 0.00067 13.4 0.0 1 2 0.00018 0.022 8.5 0.0 7 40 10 39 4 84 0.71 # 98589 # 100628 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_105 - 680 AAA_30 PF13604.1 196 0.00067 13.4 0.0 2 2 0.013 1.5 2.4 0.0 97 133 213 248 195 301 0.82 # 98589 # 100628 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 2_2 - 254 MTS PF05175.9 170 2.8e-08 27.5 0.0 1 1 3.7e-10 4.5e-08 26.8 0.0 35 144 104 205 89 224 0.72 # 822 # 1583 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_4 - 564 MTS PF05175.9 170 7.6e-07 22.8 0.0 1 1 1.1e-08 1.3e-06 22.0 0.0 94 156 475 532 447 543 0.80 # 1399 # 3090 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 5_6 - 565 K_oxygenase PF13434.1 341 1.4e-05 18.3 0.0 1 3 0.0039 0.95 2.4 0.0 187 220 94 125 59 130 0.79 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 K_oxygenase PF13434.1 341 1.4e-05 18.3 0.0 2 3 3.3e-06 0.00081 12.5 0.0 132 231 218 308 202 332 0.82 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 K_oxygenase PF13434.1 341 1.4e-05 18.3 0.0 3 3 0.057 14 -1.4 0.0 132 160 346 369 314 377 0.67 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_4 - 564 Cons_hypoth95 PF03602.10 183 0.0013 12.3 0.0 1 1 9.7e-06 0.0023 11.5 0.0 105 138 471 502 451 516 0.71 # 1399 # 3090 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_105 - 680 AAA_19 PF13245.1 76 9e-10 32.4 0.1 1 1 3e-11 2.4e-09 31.0 0.1 14 75 21 86 11 87 0.88 # 98589 # 100628 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_44 - 595 AAA_19 PF13245.1 76 3.5e-09 30.5 0.0 1 1 6.1e-10 4.9e-08 26.8 0.0 3 75 12 86 10 87 0.84 # 45796 # 47580 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_25 - 418 AAA_19 PF13245.1 76 0.00087 13.2 0.0 1 1 2.7e-05 0.0022 11.9 0.0 20 48 125 152 123 182 0.82 # 24716 # 25969 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_24 - 894 AAA_10 PF12846.2 304 2e-65 215.3 0.0 1 1 2.5e-67 3e-65 214.7 0.0 1 303 456 812 456 813 0.93 # 18198 # 20879 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.422 1_44 - 595 AAA_10 PF12846.2 304 0.00064 13.3 0.2 1 1 2.3e-05 0.0028 11.2 0.0 1 25 16 40 16 49 0.80 # 45796 # 47580 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_44 - 595 AAA_12 PF13087.1 200 1.7e-08 28.2 0.0 1 3 0.00079 0.19 5.2 0.0 98 153 33 84 13 94 0.78 # 45796 # 47580 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_44 - 595 AAA_12 PF13087.1 200 1.7e-08 28.2 0.0 2 3 0.0028 0.68 3.4 0.0 5 51 240 286 237 391 0.75 # 45796 # 47580 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_44 - 595 AAA_12 PF13087.1 200 1.7e-08 28.2 0.0 3 3 5.2e-07 0.00012 15.6 0.0 136 196 497 563 412 567 0.81 # 45796 # 47580 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 5_6 - 565 FAD_oxidored PF12831.2 428 7e-06 19.4 3.6 1 1 2.9e-08 7e-06 19.4 3.6 2 41 100 138 99 167 0.83 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 DAO PF01266.19 358 1e-08 28.6 11.7 1 3 1.4e-08 3.3e-06 20.3 0.7 1 38 99 134 99 190 0.84 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 DAO PF01266.19 358 1e-08 28.6 11.7 2 3 0.032 7.6 -0.6 0.1 3 31 273 301 271 307 0.75 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 DAO PF01266.19 358 1e-08 28.6 11.7 3 3 9.4e-07 0.00023 14.3 0.5 152 208 314 372 307 433 0.74 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_2 - 254 Methyltransf_31 PF13847.1 152 0.00095 12.9 0.0 1 1 9.3e-06 0.0022 11.7 0.0 8 106 105 197 99 230 0.77 # 822 # 1583 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_105 - 680 Viral_helicase1 PF01443.13 234 1.6e-11 38.3 0.1 1 3 7.8e-07 9.4e-05 16.1 0.0 2 59 21 77 20 88 0.79 # 98589 # 100628 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_105 - 680 Viral_helicase1 PF01443.13 234 1.6e-11 38.3 0.1 2 3 0.00024 0.029 8.0 0.0 61 118 208 263 179 348 0.74 # 98589 # 100628 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_105 - 680 Viral_helicase1 PF01443.13 234 1.6e-11 38.3 0.1 3 3 0.0006 0.072 6.7 0.0 187 232 540 606 528 608 0.61 # 98589 # 100628 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_44 - 595 Viral_helicase1 PF01443.13 234 5.6e-08 26.7 0.1 1 3 0.0057 0.68 3.5 0.0 2 21 20 39 19 91 0.63 # 45796 # 47580 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_44 - 595 Viral_helicase1 PF01443.13 234 5.6e-08 26.7 0.1 2 3 0.0086 1 2.9 0.0 40 135 167 261 132 297 0.74 # 45796 # 47580 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_44 - 595 Viral_helicase1 PF01443.13 234 5.6e-08 26.7 0.1 3 3 5.6e-07 6.7e-05 16.6 0.0 174 232 485 562 400 563 0.67 # 45796 # 47580 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_115 - 273 ThiS-like PF14453.1 57 0.0018 12.3 0.0 1 1 1.7e-05 0.004 11.2 0.0 25 54 165 194 146 196 0.94 # 106628 # 107446 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.492 5_6 - 565 NAD_binding_9 PF13454.1 156 6.9e-05 16.8 2.8 1 3 0.0081 2 2.3 0.1 1 41 101 135 101 162 0.81 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 NAD_binding_9 PF13454.1 156 6.9e-05 16.8 2.8 2 3 0.034 8.1 0.3 0.0 134 155 218 241 202 242 0.72 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 NAD_binding_9 PF13454.1 156 6.9e-05 16.8 2.8 3 3 6.6e-06 0.0016 12.4 0.1 112 155 321 366 311 367 0.85 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_44 - 595 DEAD PF00270.24 169 7.3e-05 16.5 0.7 1 1 3.8e-06 0.00091 12.9 0.7 4 105 8 107 5 222 0.77 # 45796 # 47580 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 5_6 - 565 Pyr_redox PF00070.22 80 8.7e-20 65.1 6.0 1 2 1.4e-06 0.00034 15.2 1.5 1 31 99 129 99 131 0.96 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 Pyr_redox PF00070.22 80 8.7e-20 65.1 6.0 2 2 6.2e-18 1.5e-15 51.6 0.2 1 74 271 345 271 354 0.90 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_4 - 564 Methyltransf_27 PF13708.1 194 5.8e-56 183.2 0.0 1 1 9.9e-58 1.2e-55 182.2 0.0 2 194 93 296 92 296 0.95 # 1399 # 3090 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_115 - 273 Methyltransf_27 PF13708.1 194 1.4e-46 152.7 0.0 1 1 1.4e-48 1.6e-46 152.4 0.0 3 194 72 266 70 266 0.95 # 106628 # 107446 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.492 2_2 - 254 N6-adenineMlase PF10237.4 162 1.7e-05 18.7 0.0 1 1 1.1e-07 2.7e-05 18.0 0.0 84 133 163 214 133 225 0.77 # 822 # 1583 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_7 - 271 MethyltransfD12 PF02086.10 260 9.3e-49 160.3 0.0 1 1 4.3e-51 1e-48 160.1 0.0 1 257 6 249 6 252 0.91 # 4871 # 5683 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.445 12_3 - 252 Methyltransf_23 PF13489.1 161 0.00087 13.2 0.0 1 1 5.3e-06 0.0013 12.6 0.0 7 52 89 132 82 198 0.78 # 1849 # 2604 # 1 # ID=12_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_105 - 680 Herpes_ori_bp PF02399.10 824 0.0012 10.9 0.0 1 1 8.6e-06 0.0021 10.2 0.0 52 108 20 82 9 218 0.83 # 98589 # 100628 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 5_6 - 565 AlaDh_PNT_C PF01262.16 168 5.7e-05 16.9 3.1 1 2 0.00051 0.12 6.0 0.8 15 50 92 127 89 130 0.90 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 5_6 - 565 AlaDh_PNT_C PF01262.16 168 5.7e-05 16.9 3.1 2 2 2.1e-05 0.0051 10.5 0.1 16 58 265 307 257 339 0.84 # 1973 # 3667 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_105 - 680 UvrD-helicase PF00580.16 315 9.8e-39 127.6 0.1 1 1 1.1e-39 1.4e-37 123.8 0.1 2 307 6 260 5 268 0.91 # 98589 # 100628 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_44 - 595 UvrD-helicase PF00580.16 315 8.9e-31 101.4 2.9 1 3 1.1e-16 1.3e-14 48.4 0.0 2 105 5 91 4 95 0.92 # 45796 # 47580 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_44 - 595 UvrD-helicase PF00580.16 315 8.9e-31 101.4 2.9 2 3 1.1e-17 1.3e-15 51.6 0.3 208 314 145 248 107 249 0.86 # 45796 # 47580 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_44 - 595 UvrD-helicase PF00580.16 315 8.9e-31 101.4 2.9 3 3 0.056 6.7 -0.0 0.0 92 128 413 455 374 528 0.75 # 45796 # 47580 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_44 - 595 AAA_25 PF13481.1 194 0.00083 12.9 0.0 1 1 1.8e-05 0.0043 10.6 0.0 17 63 3 46 1 62 0.78 # 45796 # 47580 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_48 - 353 AAA_5 PF07728.9 139 5.9e-34 110.9 0.0 1 1 3.9e-36 9.5e-34 110.3 0.0 1 139 98 238 98 238 0.96 # 50378 # 51436 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4f87cf44-10be-42ef-9469-13379a482c4f # Target file: checkm_output/bins/pm290/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm290/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4f87cf44-10be-42ef-9469-13379a482c4f checkm_output/bins/pm290/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:04:26 2020 # [ok]