# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_21 - 254 UPF0020 PF01170.13 180 0.00014 16.0 0.0 1 1 1.8e-06 0.00055 14.0 0.0 15 126 87 185 76 221 0.72 # 14905 # 15666 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 2_7 - 203 RrnaAD PF00398.15 262 4.2e-05 17.1 0.0 1 1 2.1e-07 6.4e-05 16.5 0.0 47 92 98 144 80 183 0.85 # 4348 # 4956 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.499 2_53 - 418 MipZ PF09140.6 261 1.4e-11 38.4 0.1 1 2 1.4e-08 4.3e-06 20.4 0.1 2 39 116 156 115 170 0.78 # 51589 # 52842 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 2_53 - 418 MipZ PF09140.6 261 1.4e-11 38.4 0.1 2 2 5.4e-07 0.00016 15.2 0.0 77 126 236 287 213 297 0.75 # 51589 # 52842 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 2_53 - 418 YhjQ PF06564.7 244 0.0023 11.8 0.2 1 2 0.00059 0.18 5.6 0.1 6 41 119 157 115 170 0.78 # 51589 # 52842 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 2_53 - 418 YhjQ PF06564.7 244 0.0023 11.8 0.2 2 2 0.002 0.61 3.8 0.0 115 149 257 291 233 297 0.83 # 51589 # 52842 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 10_4 - 301 3HCDH_N PF02737.13 180 7.6e-07 23.4 0.7 1 1 1.1e-08 3.3e-06 21.3 0.7 1 40 6 45 6 116 0.91 # 2105 # 3007 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 10_4 - 301 GIDA PF01134.17 392 0.015 8.6 3.4 1 1 7e-05 0.021 8.1 3.4 2 72 7 78 6 90 0.89 # 2105 # 3007 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 3_19 - 126 SSB PF00436.20 104 0.0016 12.8 0.1 1 2 3.3e-05 0.01 10.2 0.1 2 83 8 87 7 94 0.74 # 15847 # 16224 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 3_19 - 126 SSB PF00436.20 104 0.0016 12.8 0.1 2 2 0.033 10 0.6 0.0 43 60 92 109 88 112 0.83 # 15847 # 16224 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 2_21 - 254 Methyltransf_18 PF12847.2 112 5.7e-06 21.4 0.0 1 1 3.5e-08 1.1e-05 20.5 0.0 3 107 102 198 100 203 0.77 # 14905 # 15666 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 3_24 - 595 UvrD_C_2 PF13538.1 104 2.6e-12 41.3 0.0 1 1 2e-14 6.1e-12 40.1 0.0 47 103 496 562 450 563 0.79 # 18900 # 20684 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 5_6 - 276 Usp PF00582.21 140 7e-39 127.7 0.1 1 3 4e-19 1.2e-16 55.6 0.1 1 140 1 152 1 152 0.93 # 4671 # 5498 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.517 5_6 - 276 Usp PF00582.21 140 7e-39 127.7 0.1 2 3 0.001 0.32 5.7 0.0 4 24 160 180 158 200 0.74 # 4671 # 5498 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.517 5_6 - 276 Usp PF00582.21 140 7e-39 127.7 0.1 3 3 1.5e-21 4.5e-19 63.5 0.0 70 140 203 275 179 275 0.87 # 4671 # 5498 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.517 3_17 - 353 AAA_2 PF07724.9 171 1.5e-05 19.5 0.0 1 1 1.1e-07 3.4e-05 18.3 0.0 5 83 98 177 95 184 0.74 # 13693 # 14751 # -1 # ID=3_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.408 1_44 - 695 DUF87 PF01935.12 229 0.00053 14.3 0.0 1 1 4e-06 0.0012 13.1 0.0 25 68 200 242 189 278 0.89 # 29884 # 31968 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 2_21 - 254 MetW PF07021.7 193 0.00021 15.1 0.0 1 1 2.1e-06 0.00032 14.6 0.0 13 102 100 192 90 202 0.77 # 14905 # 15666 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 2_33 - 564 MetW PF07021.7 193 0.002 12.0 0.0 1 1 2.3e-05 0.0035 11.2 0.0 18 83 424 487 410 499 0.85 # 28271 # 29962 # -1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_44 - 695 AAA_22 PF13401.1 131 0.00051 14.7 0.1 1 2 3.8e-05 0.012 10.3 0.1 5 24 199 218 198 295 0.71 # 29884 # 31968 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_44 - 695 AAA_22 PF13401.1 131 0.00051 14.7 0.1 2 2 0.022 6.6 1.4 0.0 89 121 505 534 458 544 0.72 # 29884 # 31968 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 2_21 - 254 Methyltransf_11 PF08241.7 95 0.00065 14.7 0.0 1 1 4.7e-06 0.0014 13.6 0.0 5 86 109 191 105 198 0.82 # 14905 # 15666 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 5_18 - 476 DNA_methylase PF00145.12 335 9.9e-76 249.4 0.0 1 1 4.2e-78 1.3e-75 249.0 0.0 1 333 92 455 92 457 0.87 # 11409 # 12836 # 1 # ID=5_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_6 - 417 N6_N4_Mtase PF01555.13 231 6.2e-22 72.6 0.0 1 1 3.1e-24 9.4e-22 72.1 0.0 1 227 128 389 128 393 0.81 # 2927 # 4177 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_53 - 418 ArsA_ATPase PF02374.10 305 1.8e-09 31.5 0.6 1 2 0.0088 2.7 1.4 0.0 214 274 14 76 6 85 0.80 # 51589 # 52842 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 2_53 - 418 ArsA_ATPase PF02374.10 305 1.8e-09 31.5 0.6 2 2 2.4e-10 7.4e-08 26.2 0.1 8 136 122 269 115 274 0.80 # 51589 # 52842 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 3_24 - 595 PhoH PF02562.11 205 9.5e-07 22.7 0.5 1 1 8.8e-08 2.7e-05 17.9 0.5 6 177 5 246 2 258 0.76 # 18900 # 20684 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 10_4 - 301 F420_oxidored PF03807.12 96 6.6e-06 21.0 0.6 1 1 6.5e-08 2e-05 19.5 0.2 2 78 7 79 6 98 0.82 # 2105 # 3007 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_53 - 418 Fer4_NifH PF00142.13 273 0.00028 14.6 0.0 1 2 2.7e-06 0.00081 13.1 0.0 7 58 122 176 116 201 0.79 # 51589 # 52842 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 2_53 - 418 Fer4_NifH PF00142.13 273 0.00028 14.6 0.0 2 2 0.1 30 -1.9 0.0 30 65 324 358 321 391 0.61 # 51589 # 52842 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 2_53 - 418 CbiA PF01656.18 195 2.3e-22 73.8 0.0 1 1 1.1e-24 3.3e-22 73.3 0.0 1 178 117 348 117 365 0.73 # 51589 # 52842 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 14_3 - 167 Ribosomal_S13 PF00416.17 107 0.0011 13.9 0.1 1 1 8e-06 0.0025 12.8 0.1 22 72 7 54 5 81 0.75 # 1097 # 1597 # -1 # ID=14_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.497 1_44 - 695 KaiC PF06745.8 227 5.8e-05 16.7 0.0 1 2 7e-06 0.0021 11.6 0.0 22 78 201 259 199 342 0.79 # 29884 # 31968 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_44 - 695 KaiC PF06745.8 227 5.8e-05 16.7 0.0 2 2 0.0039 1.2 2.6 0.0 48 105 357 414 348 425 0.85 # 29884 # 31968 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 5_1 - 468 B5 PF03484.10 70 0.0031 11.8 0.4 1 1 4.1e-05 0.013 9.9 0.0 6 51 95 139 93 141 0.91 # 291 # 1694 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.518 1_1 - 110 Rep_fac-A_3 PF08661.6 109 0.0014 13.1 0.2 1 2 0.032 9.7 0.7 0.0 6 27 14 35 10 43 0.83 # 55 # 384 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.445 1_1 - 110 Rep_fac-A_3 PF08661.6 109 0.0014 13.1 0.2 2 2 3.2e-05 0.0096 10.3 0.3 1 45 44 88 44 104 0.76 # 55 # 384 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.445 3_17 - 353 AAA PF00004.24 132 0.00066 14.4 0.0 1 1 4.7e-06 0.0014 13.3 0.0 1 74 99 178 99 237 0.73 # 13693 # 14751 # -1 # ID=3_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.408 3_24 - 595 UvrD_C PF13361.1 351 4.8e-42 139.1 0.0 1 1 2.9e-44 9e-42 138.2 0.0 2 348 254 564 253 567 0.86 # 18900 # 20684 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 3_17 - 353 Sigma54_activat PF00158.21 168 0.00038 14.4 0.0 1 1 7.9e-06 0.0024 11.8 0.0 20 120 94 189 78 223 0.65 # 13693 # 14751 # -1 # ID=3_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.408 10_4 - 301 NAD_binding_11 PF14833.1 122 1.4e-37 122.9 0.3 1 2 0.029 8.8 0.9 1.1 8 53 96 141 92 153 0.85 # 2105 # 3007 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 10_4 - 301 NAD_binding_11 PF14833.1 122 1.4e-37 122.9 0.3 2 2 4.7e-40 1.4e-37 122.9 0.3 1 121 170 289 170 290 0.98 # 2105 # 3007 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_21 - 254 N6_Mtase PF02384.11 311 1.3e-08 28.7 0.0 1 2 1.3e-05 0.0014 12.2 0.0 55 136 109 176 79 179 0.58 # 14905 # 15666 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 2_21 - 254 N6_Mtase PF02384.11 311 1.3e-08 28.7 0.0 2 2 6.1e-06 0.00062 13.3 0.0 161 200 179 219 176 247 0.76 # 14905 # 15666 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 2_33 - 564 N6_Mtase PF02384.11 311 7.6e-06 19.6 0.0 1 1 1.3e-07 1.4e-05 18.8 0.0 89 138 445 492 427 504 0.87 # 28271 # 29962 # -1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_6 - 164 N6_Mtase PF02384.11 311 0.0026 11.3 0.0 1 1 3.2e-05 0.0032 11.0 0.0 37 78 14 59 5 84 0.72 # 3001 # 3492 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.498 1_44 - 695 TraG-D_C PF12696.2 128 2.2e-11 38.2 0.0 1 1 1.5e-13 4.4e-11 37.2 0.0 2 112 505 617 504 631 0.82 # 29884 # 31968 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 10_4 - 301 NAD_binding_2 PF03446.10 163 1.3e-40 133.3 3.7 1 1 6.4e-43 2e-40 132.8 3.7 2 162 5 166 4 167 0.96 # 2105 # 3007 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_53 - 418 AAA_31 PF13614.1 157 6e-08 27.2 0.4 1 2 9.4e-08 2.9e-05 18.5 0.0 9 128 123 270 121 292 0.83 # 51589 # 52842 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 2_53 - 418 AAA_31 PF13614.1 157 6e-08 27.2 0.4 2 2 0.00088 0.27 5.6 0.1 14 89 299 381 284 410 0.72 # 51589 # 52842 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 2_21 - 254 Methyltransf_26 PF13659.1 117 3e-13 44.4 0.1 1 1 1.2e-14 1.2e-12 42.3 0.0 1 115 101 201 101 207 0.81 # 14905 # 15666 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 2_33 - 564 Methyltransf_26 PF13659.1 117 1.3e-08 29.3 0.0 1 1 2.8e-10 2.9e-08 28.3 0.0 3 116 422 516 416 517 0.80 # 28271 # 29962 # -1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 10_4 - 301 Methyltransf_26 PF13659.1 117 0.0075 10.8 6.3 1 1 0.00014 0.014 9.9 6.3 13 105 14 155 6 246 0.76 # 2105 # 3007 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 10_4 - 301 2-Hacid_dh_C PF02826.14 178 3.2e-06 20.9 0.1 1 1 1.9e-08 5.8e-06 20.0 0.1 36 146 4 118 2 124 0.86 # 2105 # 3007 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 3_24 - 595 AAA_30 PF13604.1 196 0.00011 16.3 0.3 1 2 1.5e-05 0.0044 11.1 0.0 4 66 6 66 4 90 0.72 # 18900 # 20684 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 3_24 - 595 AAA_30 PF13604.1 196 0.00011 16.3 0.3 2 2 0.0088 2.7 2.0 0.0 91 132 187 227 162 261 0.83 # 18900 # 20684 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 1_44 - 695 FtsK_SpoIIIE PF01580.13 205 3.8e-07 24.2 0.0 1 2 5.4e-07 0.00016 15.6 0.0 22 80 181 236 170 243 0.86 # 29884 # 31968 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_44 - 695 FtsK_SpoIIIE PF01580.13 205 3.8e-07 24.2 0.0 2 2 0.00047 0.14 6.0 0.0 169 204 510 542 500 543 0.81 # 29884 # 31968 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 2_21 - 254 MTS PF05175.9 170 2.2e-08 28.1 0.0 1 1 2.3e-10 3.6e-08 27.4 0.0 35 144 104 205 89 224 0.72 # 14905 # 15666 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 2_33 - 564 MTS PF05175.9 170 9.5e-07 22.8 0.0 1 1 1.1e-08 1.7e-06 22.0 0.0 94 156 475 532 447 543 0.80 # 28271 # 29962 # -1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 8_1 - 108 AAA_35 PF14516.1 331 0.0003 13.9 0.8 1 2 1.8e-06 0.00054 13.1 0.6 184 226 47 91 40 97 0.75 # 1 # 324 # 1 # ID=8_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 8_1 - 108 AAA_35 PF14516.1 331 0.0003 13.9 0.8 2 2 0.0017 0.52 3.3 0.1 180 214 72 106 69 107 0.91 # 1 # 324 # 1 # ID=8_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 2_33 - 564 Cons_hypoth95 PF03602.10 183 0.0016 12.3 0.0 1 1 9.7e-06 0.0029 11.5 0.0 105 138 471 502 451 516 0.71 # 28271 # 29962 # -1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 10_4 - 301 UDPG_MGDP_dh_N PF03721.9 185 2.2e-05 18.4 0.2 1 2 2e-06 0.00061 13.7 0.1 2 39 6 43 5 50 0.92 # 2105 # 3007 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 10_4 - 301 UDPG_MGDP_dh_N PF03721.9 185 2.2e-05 18.4 0.2 2 2 0.0061 1.9 2.3 0.0 107 139 86 117 82 126 0.77 # 2105 # 3007 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 3_24 - 595 AAA_19 PF13245.1 76 4.5e-09 30.5 0.0 1 1 4.1e-10 6.2e-08 26.8 0.0 3 75 12 86 10 87 0.84 # 18900 # 20684 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 2_53 - 418 AAA_19 PF13245.1 76 0.0011 13.2 0.0 1 1 1.8e-05 0.0028 11.9 0.0 20 48 125 152 123 182 0.82 # 51589 # 52842 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 2_51 - 894 AAA_10 PF12846.2 304 2.6e-65 215.3 0.0 1 1 3.7e-67 3.8e-65 214.7 0.0 1 303 456 812 456 813 0.93 # 45069 # 47750 # 1 # ID=2_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.423 1_44 - 695 AAA_10 PF12846.2 304 1e-16 55.7 0.0 1 1 2e-18 2e-16 54.7 0.0 2 296 199 578 198 585 0.73 # 29884 # 31968 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 3_24 - 595 AAA_10 PF12846.2 304 0.00087 13.2 0.3 1 1 3.5e-05 0.0036 11.2 0.0 1 25 16 40 16 49 0.80 # 18900 # 20684 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 3_24 - 595 AAA_12 PF13087.1 200 2.1e-08 28.3 0.1 1 3 0.00079 0.24 5.2 0.0 98 153 33 84 13 94 0.78 # 18900 # 20684 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 3_24 - 595 AAA_12 PF13087.1 200 2.1e-08 28.3 0.1 2 3 0.0026 0.8 3.5 0.0 5 52 240 287 237 400 0.74 # 18900 # 20684 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 3_24 - 595 AAA_12 PF13087.1 200 2.1e-08 28.3 0.1 3 3 5.1e-07 0.00016 15.6 0.0 136 196 497 563 409 567 0.81 # 18900 # 20684 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 2_21 - 254 Methyltransf_31 PF13847.1 152 0.00043 14.4 0.0 1 1 2.6e-06 0.0008 13.5 0.0 7 106 104 197 99 240 0.78 # 14905 # 15666 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 3_24 - 595 Viral_helicase1 PF01443.13 234 8.4e-08 26.4 0.1 1 3 0.0028 0.86 3.5 0.0 2 21 20 39 19 91 0.63 # 18900 # 20684 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 3_24 - 595 Viral_helicase1 PF01443.13 234 8.4e-08 26.4 0.1 2 3 0.0043 1.3 2.9 0.0 40 135 167 261 132 297 0.74 # 18900 # 20684 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 3_24 - 595 Viral_helicase1 PF01443.13 234 8.4e-08 26.4 0.1 3 3 3.5e-07 0.00011 16.3 0.0 183 232 494 562 401 563 0.72 # 18900 # 20684 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 5_23 - 273 ThiS-like PF14453.1 57 0.0024 12.2 0.0 1 1 1.7e-05 0.0051 11.2 0.0 25 54 165 194 146 196 0.94 # 15888 # 16706 # -1 # ID=5_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 3_24 - 595 DEAD PF00270.24 169 9.1e-05 16.5 0.7 1 1 3.8e-06 0.0012 12.9 0.7 4 105 8 107 5 222 0.77 # 18900 # 20684 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 1_44 - 695 DUF853 PF05872.7 504 8.7e-05 15.4 0.0 1 1 6.2e-07 0.00019 14.3 0.0 10 60 187 237 179 245 0.87 # 29884 # 31968 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 2_33 - 564 Methyltransf_27 PF13708.1 194 1.1e-56 185.9 0.1 1 1 1.5e-58 2.3e-56 184.9 0.0 2 194 93 296 92 296 0.95 # 28271 # 29962 # -1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 5_23 - 273 Methyltransf_27 PF13708.1 194 1.5e-46 152.8 0.0 1 1 1.2e-48 1.8e-46 152.6 0.0 3 194 72 266 70 266 0.95 # 15888 # 16706 # -1 # ID=5_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_44 - 695 TrwB_AAD_bind PF10412.4 386 1.5e-16 54.5 0.0 1 2 6.5e-07 0.0002 14.5 0.0 16 52 199 235 191 341 0.88 # 29884 # 31968 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_44 - 695 TrwB_AAD_bind PF10412.4 386 1.5e-16 54.5 0.0 2 2 8.1e-14 2.5e-11 37.2 0.0 164 345 412 604 391 646 0.77 # 29884 # 31968 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 2_21 - 254 N6-adenineMlase PF10237.4 162 2.2e-05 18.6 0.0 1 1 1.1e-07 3.5e-05 18.0 0.0 84 133 163 214 133 225 0.77 # 14905 # 15666 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 2_7 - 203 TIGR00755 TIGR00755 256 7.6e-05 16.2 0.1 1 1 4.8e-07 0.00015 15.3 0.1 32 86 83 139 61 150 0.86 # 4348 # 4956 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.499 2_35 - 278 MethyltransfD12 PF02086.10 260 2.2e-47 156.2 0.0 1 1 8e-50 2.4e-47 156.0 0.0 1 256 13 255 13 259 0.91 # 31722 # 32555 # 1 # ID=2_35;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.446 10_4 - 301 TrkA_N PF02254.13 116 0.0001 16.8 0.0 1 1 8e-07 0.00025 15.6 0.0 1 42 7 48 7 79 0.86 # 2105 # 3007 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 10_4 - 301 AlaDh_PNT_C PF01262.16 168 0.0004 14.5 1.6 1 2 4.2e-06 0.0013 12.8 0.1 21 66 5 50 2 62 0.90 # 2105 # 3007 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 10_4 - 301 AlaDh_PNT_C PF01262.16 168 0.0004 14.5 1.6 2 2 0.028 8.5 0.4 0.2 13 42 84 113 72 117 0.84 # 2105 # 3007 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 3_24 - 595 UvrD-helicase PF00580.16 315 1.3e-30 101.2 2.8 1 3 5.3e-17 1.6e-14 48.4 0.0 2 105 5 91 4 95 0.92 # 18900 # 20684 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 3_24 - 595 UvrD-helicase PF00580.16 315 1.3e-30 101.2 2.8 2 3 5.5e-18 1.7e-15 51.6 0.3 208 314 145 248 107 249 0.86 # 18900 # 20684 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 3_24 - 595 UvrD-helicase PF00580.16 315 1.3e-30 101.2 2.8 3 3 0.036 11 -0.4 0.0 91 128 412 455 373 525 0.73 # 18900 # 20684 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 3_24 - 595 AAA_25 PF13481.1 194 0.001 12.9 0.0 1 1 1.8e-05 0.0054 10.6 0.0 17 63 3 46 1 62 0.78 # 18900 # 20684 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 2_7 - 203 Spermine_synth PF01564.12 246 0.0011 12.4 0.0 1 1 5e-06 0.0015 11.9 0.0 79 143 83 141 65 156 0.84 # 4348 # 4956 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.499 3_17 - 353 AAA_5 PF07728.9 139 7.4e-34 110.9 0.0 1 1 3.9e-36 1.2e-33 110.3 0.0 1 139 98 238 98 238 0.96 # 13693 # 14751 # -1 # ID=3_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.408 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/53a2833e-951c-4f0c-8bdd-2591e72f1d22 # Target file: checkm_output/bins/pm287/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm287/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/53a2833e-951c-4f0c-8bdd-2591e72f1d22 checkm_output/bins/pm287/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:04:25 2020 # [ok]