# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_32 - 347 Mg_chelatase PF01078.16 207 2e-05 16.8 0.1 1 1 4.5e-07 4.8e-05 15.6 0.0 20 44 122 146 105 158 0.80 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_29 - 150 RNA_pol_A_bac PF01000.21 112 0.00027 14.1 0.0 1 1 3.5e-06 0.00037 13.7 0.0 22 90 12 100 7 106 0.74 # 22942 # 23391 # -1 # ID=2_29;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.516 2_32 - 347 IstB_IS21 PF01695.12 178 6.6e-06 18.6 0.0 1 1 1.5e-07 1.6e-05 17.4 0.0 28 70 105 147 90 171 0.79 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_24 - 221 MipZ PF09140.6 261 3.2e-12 39.0 0.8 1 1 6.7e-12 7.2e-10 31.3 0.8 3 131 5 112 3 135 0.79 # 19330 # 19992 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_8 - 171 SSB PF00436.20 104 2e-42 136.4 0.3 1 1 2.2e-44 2.4e-42 136.1 0.3 1 103 6 112 6 113 0.97 # 6880 # 7392 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_57 - 1754 UvrD_C_2 PF13538.1 104 9e-07 22.1 0.1 1 2 0.065 7 -0.1 0.0 5 42 1225 1262 1222 1287 0.73 # 44540 # 49801 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_57 - 1754 UvrD_C_2 PF13538.1 104 9e-07 22.1 0.1 2 2 1.1e-07 1.2e-05 18.4 0.0 3 102 1340 1443 1338 1445 0.72 # 44540 # 49801 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 2_32 - 347 AAA_2 PF07724.9 171 3.1e-07 23.5 0.0 1 1 7.6e-09 8.1e-07 22.1 0.0 5 105 126 220 122 226 0.85 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 1_38 - 880 DUF87 PF01935.12 229 4.8e-06 19.5 0.0 1 2 0.091 9.8 -1.1 0.2 114 170 313 364 304 395 0.60 # 26030 # 28669 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_38 - 880 DUF87 PF01935.12 229 4.8e-06 19.5 0.0 2 2 2.2e-07 2.3e-05 17.3 0.0 26 222 484 674 479 681 0.82 # 26030 # 28669 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_32 - 347 AAA_22 PF13401.1 131 1.3e-05 18.4 3.0 1 3 1.5e-05 0.00078 12.6 0.1 7 27 127 147 116 159 0.87 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_32 - 347 AAA_22 PF13401.1 131 1.3e-05 18.4 3.0 2 3 0.0066 0.35 4.0 0.0 71 117 167 223 143 239 0.65 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_32 - 347 AAA_22 PF13401.1 131 1.3e-05 18.4 3.0 3 3 0.055 2.9 1.0 0.2 37 111 245 326 207 336 0.70 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 1_57 - 1754 AAA_22 PF13401.1 131 0.00064 12.9 0.0 1 2 0.011 0.61 3.2 0.0 89 121 505 536 468 538 0.72 # 44540 # 49801 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_57 - 1754 AAA_22 PF13401.1 131 0.00064 12.9 0.0 2 2 0.0017 0.089 6.0 0.0 5 28 988 1011 984 1068 0.80 # 44540 # 49801 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 2_24 - 221 SRP54 PF00448.17 196 1.2e-05 17.9 0.3 1 1 4.1e-07 4.4e-05 16.0 0.3 11 98 13 94 4 134 0.80 # 19330 # 19992 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 2_32 - 347 AAA_17 PF13207.1 121 3.2e-08 27.4 0.0 1 1 1.1e-09 1.2e-07 25.6 0.0 1 52 126 178 126 267 0.62 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_7 - 713 AAA_21 PF13304.1 303 1.8e-08 27.7 0.2 1 2 6.8e-06 0.00073 12.5 0.0 7 71 29 106 27 212 0.63 # 2750 # 4888 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 2_7 - 713 AAA_21 PF13304.1 303 1.8e-08 27.7 0.2 2 2 6.5e-06 0.0007 12.6 0.0 219 298 386 487 301 489 0.75 # 2750 # 4888 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 2_24 - 221 MobB PF03205.9 140 4.5e-06 19.4 0.6 1 2 6.6e-07 7.1e-05 15.6 0.2 10 38 13 41 5 47 0.90 # 19330 # 19992 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 2_24 - 221 MobB PF03205.9 140 4.5e-06 19.4 0.6 2 2 0.013 1.4 1.6 0.0 45 77 86 121 84 135 0.76 # 19330 # 19992 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 2_24 - 221 ArsA_ATPase PF02374.10 305 1.9e-05 16.8 0.0 1 1 2.6e-07 2.8e-05 16.3 0.0 4 40 6 42 3 89 0.86 # 19330 # 19992 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 2_32 - 347 PhoH PF02562.11 205 0.00062 12.0 0.0 1 1 1.2e-05 0.0013 11.0 0.0 19 40 124 145 103 153 0.77 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_32 - 347 T2SE PF00437.15 272 0.0004 12.3 0.0 1 1 6.4e-06 0.00068 11.5 0.0 101 152 100 148 25 151 0.82 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_32 - 347 SKI PF01202.17 158 0.00043 13.2 0.2 1 2 0.093 10 -1.0 0.1 102 148 56 105 44 118 0.65 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_32 - 347 SKI PF01202.17 158 0.00043 13.2 0.2 2 2 1.8e-05 0.002 11.0 0.0 1 37 133 171 133 179 0.88 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_32 - 347 Zeta_toxin PF06414.7 201 3e-05 16.2 0.0 1 1 6e-07 6.4e-05 15.1 0.0 14 52 122 159 109 183 0.80 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_7 - 713 SMC_N PF02463.14 220 0.00022 13.5 0.0 1 2 0.00049 0.052 5.7 0.0 5 45 3 42 1 50 0.78 # 2750 # 4888 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 2_7 - 713 SMC_N PF02463.14 220 0.00022 13.5 0.0 2 2 0.0005 0.053 5.7 0.0 135 186 243 470 100 500 0.73 # 2750 # 4888 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 2_24 - 221 VirC1 PF07015.6 231 2.6e-11 36.0 0.1 1 1 5.1e-13 5.5e-11 34.9 0.1 6 55 7 56 3 160 0.82 # 19330 # 19992 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 2_24 - 221 Fer4_NifH PF00142.13 273 1.1e-05 17.7 0.3 1 1 1.8e-07 1.9e-05 16.9 0.3 3 41 4 44 2 47 0.86 # 19330 # 19992 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_56 - 769 AAA_16 PF13191.1 185 3.2e-06 20.2 0.0 1 1 2.8e-07 1.5e-05 18.0 0.0 20 56 181 218 179 253 0.78 # 42234 # 44540 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 2_32 - 347 AAA_16 PF13191.1 185 8.9e-06 18.8 0.9 1 1 5.9e-07 3.2e-05 17.0 0.1 25 81 125 182 108 316 0.81 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_7 - 713 AAA_23 PF13476.1 202 1.1e-08 28.6 0.1 1 1 3.4e-10 3.6e-08 26.9 0.1 2 177 3 271 2 351 0.67 # 2750 # 4888 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 2_32 - 347 AAA_18 PF13238.1 129 3e-06 20.6 0.2 1 1 1.9e-07 2e-05 17.9 0.0 1 75 127 225 127 260 0.62 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_7 - 713 AAA_13 PF13166.1 712 5.8e-27 87.4 0.0 1 3 7.6e-12 8.2e-10 30.7 0.0 15 129 20 151 10 169 0.76 # 2750 # 4888 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 2_7 - 713 AAA_13 PF13166.1 712 5.8e-27 87.4 0.0 2 3 3.5e-06 0.00038 12.0 0.0 240 390 195 383 184 388 0.60 # 2750 # 4888 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 2_7 - 713 AAA_13 PF13166.1 712 5.8e-27 87.4 0.0 3 3 2.5e-15 2.6e-13 42.2 0.0 461 572 376 489 309 509 0.77 # 2750 # 4888 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 2_24 - 221 CbiA PF01656.18 195 2.9e-14 45.9 1.6 1 1 1e-15 1.1e-13 44.0 1.6 4 170 8 158 5 179 0.71 # 19330 # 19992 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 2_32 - 347 KaiC PF06745.8 227 5.6e-06 18.6 0.0 1 2 1.9e-06 0.0002 13.5 0.0 10 37 115 142 105 147 0.88 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_32 - 347 KaiC PF06745.8 227 5.6e-06 18.6 0.0 2 2 0.0035 0.38 2.8 0.0 122 160 192 231 160 253 0.84 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_32 - 347 AAA_14 PF13173.1 128 0.00018 14.5 0.0 1 1 3.4e-06 0.00036 13.4 0.0 3 99 125 233 123 259 0.71 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_32 - 347 AAA PF00004.24 132 8.3e-33 106.4 0.0 1 2 0.031 3.3 0.9 0.0 76 99 32 55 21 83 0.80 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_32 - 347 AAA PF00004.24 132 8.3e-33 106.4 0.0 2 2 8.8e-34 9.4e-32 103.0 0.0 1 130 127 251 127 253 0.94 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 1_56 - 769 TraG-D_C PF12696.2 128 7.3e-20 64.2 0.0 1 1 1.5e-21 1.7e-19 63.0 0.0 1 127 419 541 419 542 0.88 # 42234 # 44540 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 2_24 - 221 AAA_31 PF13614.1 157 0.00029 13.8 0.0 1 2 0.00016 0.017 8.1 0.0 5 42 7 44 3 60 0.81 # 19330 # 19992 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 2_24 - 221 AAA_31 PF13614.1 157 0.00029 13.8 0.0 2 2 0.0035 0.37 3.7 0.0 110 151 69 112 61 117 0.80 # 19330 # 19992 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 2_32 - 347 AAA_33 PF13671.1 143 1.7e-07 24.2 0.0 1 1 4.7e-09 5e-07 22.7 0.0 2 91 127 248 127 267 0.71 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 1_57 - 1754 AAA_30 PF13604.1 196 1e-45 148.7 5.6 1 2 5.7e-07 6.1e-05 15.6 1.0 9 126 424 536 422 561 0.85 # 44540 # 49801 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_57 - 1754 AAA_30 PF13604.1 196 1e-45 148.7 5.6 2 2 3.7e-43 3.9e-41 133.7 0.3 2 186 971 1158 970 1162 0.93 # 44540 # 49801 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_38 - 880 FtsK_SpoIIIE PF01580.13 205 0.00012 14.6 0.0 1 1 2.7e-06 0.00029 13.3 0.0 39 63 480 506 466 508 0.85 # 26030 # 28669 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_7 - 713 ABC_tran PF00005.22 137 3.2e-07 23.7 0.5 1 2 0.00069 0.037 7.3 1.2 19 37 29 47 16 174 0.64 # 2750 # 4888 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 2_7 - 713 ABC_tran PF00005.22 137 3.2e-07 23.7 0.5 2 2 3.1e-05 0.0016 11.7 0.0 87 136 398 452 283 453 0.74 # 2750 # 4888 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 2_32 - 347 ABC_tran PF00005.22 137 0.00045 13.6 0.0 1 1 2.6e-05 0.0014 12.0 0.0 8 35 121 148 117 176 0.92 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_32 - 347 RuvB_N PF05496.7 234 3.3e-05 16.0 0.0 1 1 6.7e-07 7.2e-05 14.9 0.0 51 78 125 152 86 195 0.79 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_32 - 347 AAA_19 PF13245.1 76 1.2e-06 21.3 0.0 1 1 7.1e-08 3.8e-06 19.6 0.0 10 34 125 148 115 186 0.78 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 1_57 - 1754 AAA_19 PF13245.1 76 1e-05 18.3 0.4 1 1 1.9e-07 1e-05 18.3 0.4 5 74 981 1047 976 1050 0.70 # 44540 # 49801 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_38 - 880 AAA_10 PF12846.2 304 1e-45 149.4 0.0 1 1 4.6e-47 1.7e-45 148.7 0.0 1 294 481 773 481 779 0.85 # 26030 # 28669 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_56 - 769 AAA_10 PF12846.2 304 2.2e-09 30.1 0.0 1 1 2.4e-08 8.4e-07 21.6 0.0 3 296 187 494 186 499 0.60 # 42234 # 44540 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 2_16 - 93 AAA_10 PF12846.2 304 3.1e-05 16.5 0.0 1 1 1.1e-06 3.8e-05 16.2 0.0 234 264 5 37 2 48 0.87 # 12687 # 12965 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.570 2_32 - 347 ResIII PF04851.10 184 0.00033 13.5 0.0 1 1 6.2e-06 0.00066 12.5 0.0 22 48 119 147 96 191 0.80 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_32 - 347 TIP49 PF06068.8 398 3.7e-05 15.5 0.1 1 1 7.4e-07 8e-05 14.4 0.0 42 79 115 151 103 176 0.82 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 1_56 - 769 TrwB_AAD_bind PF10412.4 386 1.6e-148 487.4 0.0 1 1 3.7e-150 2e-148 487.0 0.0 2 386 172 561 171 561 0.99 # 42234 # 44540 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_38 - 880 TrwB_AAD_bind PF10412.4 386 1.6e-05 16.6 0.2 1 1 8e-07 4.3e-05 15.2 0.0 16 91 482 553 474 569 0.71 # 26030 # 28669 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_57 - 1754 AAA_11 PF13086.1 236 1.3e-05 17.8 0.0 1 2 4.2e-05 0.0022 10.5 0.0 2 69 971 1035 970 1061 0.77 # 44540 # 49801 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_57 - 1754 AAA_11 PF13086.1 236 1.3e-05 17.8 0.0 2 2 0.0038 0.2 4.1 0.0 196 231 1069 1107 1044 1109 0.80 # 44540 # 49801 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 2_32 - 347 AAA_11 PF13086.1 236 0.00016 14.2 0.0 1 1 5.7e-06 0.00031 13.4 0.0 14 42 121 153 95 343 0.73 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 1_56 - 769 T4SS-DNA_transf PF02534.9 469 7.6e-09 27.5 0.0 1 2 0.022 2.4 -0.5 0.0 128 199 260 330 247 357 0.74 # 42234 # 44540 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_56 - 769 T4SS-DNA_transf PF02534.9 469 7.6e-09 27.5 0.0 2 2 3.4e-10 3.6e-08 25.3 0.0 276 393 394 507 364 559 0.74 # 42234 # 44540 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_38 - 880 Pox_A32 PF04665.7 241 8e-05 15.0 0.0 1 1 1.5e-06 0.00016 14.0 0.0 6 40 474 508 470 523 0.82 # 26030 # 28669 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_24 - 221 GTP_EFTU PF00009.22 188 3.9e-05 16.1 0.0 1 1 4.2e-07 4.4e-05 15.9 0.0 15 113 15 121 12 190 0.81 # 19330 # 19992 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 2_32 - 347 RNA_helicase PF00910.17 107 2.1e-05 17.7 0.0 1 1 4.5e-07 4.8e-05 16.5 0.0 1 106 127 232 127 233 0.82 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_32 - 347 AAA_24 PF13479.1 213 0.00061 12.4 0.1 1 1 1.5e-05 0.0016 11.0 0.1 5 23 126 144 124 154 0.84 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_32 - 347 AAA_25 PF13481.1 194 2.1e-05 17.0 0.3 1 1 6.3e-07 6.7e-05 15.3 0.1 28 56 120 147 97 176 0.83 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_32 - 347 AAA_28 PF13521.1 163 7.7e-06 19.0 0.1 1 1 1.8e-07 2e-05 17.6 0.0 1 51 126 177 126 253 0.86 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_32 - 347 AAA_5 PF07728.9 139 1.8e-06 20.7 3.4 1 2 0.077 8.2 -0.8 0.0 77 100 37 60 32 85 0.74 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 2_32 - 347 AAA_5 PF07728.9 139 1.8e-06 20.7 3.4 2 2 6e-08 6.4e-06 19.0 0.3 2 37 127 162 126 245 0.64 # 27315 # 28355 # -1 # ID=2_32;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9d2f3016-239f-4bd5-aa26-305454cc2eb2 # Target file: checkm_output/bins/pm28/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm28/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9d2f3016-239f-4bd5-aa26-305454cc2eb2 checkm_output/bins/pm28/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:04:20 2020 # [ok]