# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 5_2 - 260 IstB_IS21 PF01695.12 178 3.4e-69 226.1 0.1 1 1 8.1e-71 7.2e-69 225.0 0.1 1 178 56 235 56 235 0.98 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 26_2 - 107 IstB_IS21 PF01695.12 178 1.2e-25 84.3 0.0 1 1 1.6e-27 1.4e-25 84.0 0.0 1 74 17 90 17 101 0.94 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 7_8 - 96 IstB_IS21 PF01695.12 178 1.8e-15 51.1 0.0 1 1 2.8e-17 2.4e-15 50.6 0.0 134 174 42 82 36 85 0.92 # 6017 # 6304 # -1 # ID=7_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 5_3 - 400 MipZ PF09140.6 261 3.5e-08 27.1 0.1 1 2 0.0004 0.11 5.8 0.0 2 48 110 161 109 186 0.76 # 2084 # 3283 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 5_3 - 400 MipZ PF09140.6 261 3.5e-08 27.1 0.1 2 2 3.8e-08 1e-05 19.0 0.0 88 135 234 281 216 288 0.87 # 2084 # 3283 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 5_3 - 400 YhjQ PF06564.7 244 0.0013 12.3 0.7 1 3 0.076 20 -1.3 0.0 175 199 28 53 2 95 0.53 # 2084 # 3283 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 5_3 - 400 YhjQ PF06564.7 244 0.0013 12.3 0.7 2 3 0.038 10 -0.4 0.0 9 46 116 159 110 169 0.63 # 2084 # 3283 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 5_3 - 400 YhjQ PF06564.7 244 0.0013 12.3 0.7 3 3 3.7e-05 0.0099 9.5 0.0 106 183 235 311 215 322 0.78 # 2084 # 3283 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 3_5 - 1648 UvrD_C_2 PF13538.1 104 3.1e-07 24.8 0.7 1 2 0.017 4.6 1.8 0.0 6 44 1118 1156 1114 1185 0.76 # 3573 # 8516 # 1 # ID=3_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 3_5 - 1648 UvrD_C_2 PF13538.1 104 3.1e-07 24.8 0.7 2 2 3.6e-08 9.7e-06 20.0 0.2 3 102 1232 1335 1230 1337 0.77 # 3573 # 8516 # 1 # ID=3_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_30 - 431 DUF87 PF01935.12 229 0.00029 15.0 0.1 1 1 3.6e-06 0.00096 13.3 0.0 24 47 153 176 152 233 0.90 # 26555 # 27847 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.391 5_2 - 260 AAA_22 PF13401.1 131 4.6e-06 21.1 0.2 1 1 2e-05 0.0018 12.7 0.1 6 28 104 126 99 202 0.64 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_30 - 431 AAA_22 PF13401.1 131 0.00027 15.4 0.0 1 1 3.6e-05 0.0032 11.9 0.0 9 68 157 237 151 280 0.71 # 26555 # 27847 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.391 26_2 - 107 AAA_22 PF13401.1 131 0.00059 14.3 0.1 1 1 1.6e-05 0.0014 13.1 0.0 5 21 64 80 60 99 0.83 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 12_5 - 87 Rad60-SLD PF11976.3 72 0.00029 14.8 0.1 1 1 1.5e-06 0.00041 14.3 0.1 12 39 41 68 33 77 0.83 # 3034 # 3294 # -1 # ID=12_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 3_1 - 668 AAA_17 PF13207.1 121 0.0007 14.7 0.0 1 1 1.2e-05 0.0016 13.6 0.0 3 28 121 150 119 287 0.73 # 523 # 2526 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.533 26_2 - 107 AAA_17 PF13207.1 121 0.0026 12.9 0.0 1 1 3.4e-05 0.0045 12.1 0.0 2 17 66 81 65 101 0.86 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 3_1 - 668 MobB PF03205.9 140 0.0029 11.6 0.0 1 1 2.4e-05 0.0063 10.5 0.0 7 34 124 151 120 157 0.89 # 523 # 2526 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.533 5_3 - 400 ArsA_ATPase PF02374.10 305 0.0015 11.9 0.0 1 2 2.4e-05 0.0065 9.8 0.0 5 42 112 156 109 173 0.74 # 2084 # 3283 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 5_3 - 400 ArsA_ATPase PF02374.10 305 0.0015 11.9 0.0 2 2 0.068 18 -1.6 0.0 124 136 242 254 222 255 0.81 # 2084 # 3283 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 26_2 - 107 PhoH PF02562.11 205 1.7e-07 24.9 0.0 1 1 3.1e-09 4.1e-07 23.7 0.0 11 51 55 96 44 100 0.77 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 5_2 - 260 PhoH PF02562.11 205 2e-07 24.7 0.1 1 1 4.6e-09 6.1e-07 23.1 0.0 11 51 94 134 84 160 0.84 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 26_2 - 107 Ras PF00071.17 162 0.0021 11.7 0.0 1 1 1.3e-05 0.0036 11.0 0.0 2 28 66 92 65 104 0.85 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 42_2 - 169 Mur_ligase PF01225.20 83 0.001 13.4 0.0 1 1 5.9e-06 0.0016 12.9 0.0 8 49 60 107 58 138 0.78 # 282 # 788 # 1 # ID=42_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.529 3_1 - 668 Zeta_toxin PF06414.7 201 0.00041 13.8 0.0 1 3 0.092 24 -1.8 0.0 106 127 85 106 80 109 0.86 # 523 # 2526 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.533 3_1 - 668 Zeta_toxin PF06414.7 201 0.00041 13.8 0.0 2 3 2.9e-05 0.0078 9.6 0.0 21 49 122 151 114 179 0.86 # 523 # 2526 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.533 3_1 - 668 Zeta_toxin PF06414.7 201 0.00041 13.8 0.0 3 3 0.025 6.6 0.0 0.0 54 92 215 254 212 274 0.85 # 523 # 2526 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.533 1_8 - 364 RNA_pol_Rpb2_45 PF10385.4 66 0.00073 13.7 0.2 1 1 9.2e-06 0.0024 12.0 0.2 10 38 294 322 286 332 0.82 # 7464 # 8555 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.383 5_3 - 400 VirC1 PF07015.6 231 4e-05 17.0 0.0 1 2 0.0061 1.6 2.0 0.0 6 28 113 135 110 163 0.81 # 2084 # 3283 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 5_3 - 400 VirC1 PF07015.6 231 4e-05 17.0 0.0 2 2 3.1e-06 0.00084 12.7 0.0 51 136 210 297 206 344 0.87 # 2084 # 3283 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 1_30 - 431 Arch_ATPase PF01637.13 234 9.8e-05 16.4 0.0 1 1 2.7e-06 0.00024 15.1 0.0 25 129 157 253 140 264 0.65 # 26555 # 27847 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.391 26_2 - 107 Arch_ATPase PF01637.13 234 0.0014 12.6 0.0 1 1 2.1e-05 0.0019 12.2 0.0 7 37 50 80 47 102 0.80 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 5_2 - 260 Arch_ATPase PF01637.13 234 0.0018 12.2 0.1 1 1 8.5e-05 0.0075 10.2 0.0 8 37 90 119 87 140 0.79 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 3_1 - 668 AAA_16 PF13191.1 185 1e-05 19.9 0.0 1 1 5.2e-07 4.6e-05 17.7 0.0 21 60 114 154 109 194 0.81 # 523 # 2526 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.533 26_2 - 107 AAA_16 PF13191.1 185 0.00016 16.0 0.0 1 1 2.7e-06 0.00024 15.4 0.0 12 41 54 80 42 84 0.75 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 5_2 - 260 AAA_16 PF13191.1 185 0.00038 14.7 1.6 1 1 1.1e-05 0.00099 13.4 0.2 22 41 100 119 87 159 0.79 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 13_2 - 534 AAA_23 PF13476.1 202 0.067 7.8 8.2 1 1 0.0005 0.13 6.8 8.2 123 197 13 84 2 89 0.47 # 578 # 2179 # 1 # ID=13_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.524 5_3 - 400 CbiA PF01656.18 195 7.3e-22 72.0 0.0 1 1 4.5e-24 1.2e-21 71.3 0.0 1 144 111 294 111 321 0.74 # 2084 # 3283 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 5_2 - 260 AAA_14 PF13173.1 128 3.5e-06 21.3 0.0 1 1 2.4e-08 6.5e-06 20.4 0.0 2 96 102 203 101 220 0.67 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 26_2 - 107 AAA_29 PF13555.1 62 0.0018 12.1 0.0 1 1 1.1e-05 0.003 11.4 0.0 18 39 58 79 50 84 0.77 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 5_2 - 260 AAA PF00004.24 132 5.5e-07 24.1 0.0 1 1 7.4e-09 9.8e-07 23.3 0.0 1 74 105 180 105 213 0.77 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 26_2 - 107 AAA PF00004.24 132 0.00055 14.5 0.0 1 1 7e-06 0.00093 13.7 0.0 1 30 66 95 66 103 0.78 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 5_2 - 260 Bac_DnaA PF00308.13 219 2.8e-09 31.2 0.0 1 1 3e-11 4.1e-09 30.7 0.0 36 136 104 202 74 207 0.83 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 26_2 - 107 Bac_DnaA PF00308.13 219 0.00044 14.2 0.0 1 1 4.1e-06 0.00055 13.9 0.0 37 64 66 93 36 99 0.86 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 5_2 - 260 Sigma54_activat PF00158.21 168 0.00026 14.8 0.1 1 1 1.3e-05 0.0018 12.1 0.1 18 53 98 133 82 197 0.69 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 26_2 - 107 Sigma54_activat PF00158.21 168 0.0014 12.4 0.0 1 1 1.5e-05 0.0021 11.9 0.0 18 42 59 83 42 97 0.77 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 26_2 - 107 DUF258 PF03193.11 161 1.9e-05 18.2 0.0 1 1 2.7e-07 2.4e-05 17.9 0.0 21 53 49 81 30 99 0.73 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 5_2 - 260 DUF258 PF03193.11 161 7.9e-05 16.2 0.0 1 1 1.3e-06 0.00012 15.6 0.0 22 78 89 157 70 190 0.68 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_30 - 431 DUF258 PF03193.11 161 0.0014 12.1 0.0 1 1 2.9e-05 0.0026 11.2 0.0 34 85 151 202 132 209 0.84 # 26555 # 27847 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.391 3_1 - 668 TraG-D_C PF12696.2 128 1.8e-20 67.4 0.0 1 1 1.2e-22 3.2e-20 66.6 0.0 1 127 351 473 351 474 0.86 # 523 # 2526 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.533 2_4 - 754 TruB_N PF01509.13 149 0.00087 13.8 0.0 1 1 6.4e-06 0.0017 12.8 0.0 20 103 10 99 7 114 0.81 # 2447 # 4708 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 5_3 - 400 AAA_31 PF13614.1 157 1.4e-07 25.9 0.1 1 2 0.00019 0.052 7.8 0.0 3 44 111 158 109 210 0.86 # 2084 # 3283 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 5_3 - 400 AAA_31 PF13614.1 157 1.4e-07 25.9 0.1 2 2 7e-07 0.00019 15.7 0.0 108 148 235 274 233 279 0.87 # 2084 # 3283 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 5_2 - 260 NTPase_1 PF03266.10 168 0.00067 13.7 0.1 1 2 0.0026 0.69 3.9 0.1 2 26 105 129 104 138 0.74 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 5_2 - 260 NTPase_1 PF03266.10 168 0.00067 13.7 0.1 2 2 0.00019 0.052 7.5 0.0 88 113 157 182 143 204 0.72 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 3_5 - 1648 AAA_30 PF13604.1 196 3.4e-44 145.0 13.4 1 2 1.7e-05 0.0022 11.8 3.3 7 146 311 442 307 452 0.84 # 3573 # 8516 # 1 # ID=3_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 3_5 - 1648 AAA_30 PF13604.1 196 3.4e-44 145.0 13.4 2 2 4.8e-44 6.4e-42 137.6 1.3 1 187 859 1048 859 1052 0.94 # 3573 # 8516 # 1 # ID=3_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 3_1 - 668 AAA_30 PF13604.1 196 0.0015 12.4 0.0 1 1 2.3e-05 0.0031 11.4 0.0 21 57 120 156 112 162 0.85 # 523 # 2526 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.533 1_9 - 581 KH_4 PF13083.1 73 0.00037 14.4 0.3 1 2 3.4e-05 0.0091 10.0 0.0 24 64 286 327 273 334 0.80 # 8575 # 10317 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.380 1_9 - 581 KH_4 PF13083.1 73 0.00037 14.4 0.3 2 2 0.019 5.1 1.2 0.1 38 46 432 440 428 441 0.90 # 8575 # 10317 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.380 1_30 - 431 ABC_tran PF00005.22 137 0.00025 15.7 0.0 1 1 5.6e-06 0.0005 14.7 0.0 6 62 147 208 144 254 0.78 # 26555 # 27847 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.391 5_2 - 260 ABC_tran PF00005.22 137 0.0004 15.0 0.3 1 1 4e-05 0.0036 11.9 0.0 8 30 99 121 93 132 0.86 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 26_2 - 107 ABC_tran PF00005.22 137 0.00062 14.4 0.0 1 1 1.1e-05 0.001 13.7 0.0 8 29 60 81 54 87 0.86 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_30 - 431 ATP-synt_ab PF00006.20 215 5e-72 236.1 0.0 1 1 2.9e-74 7.8e-72 235.5 0.0 1 215 138 349 138 349 1.00 # 26555 # 27847 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.391 3_5 - 1648 AAA_19 PF13245.1 76 2.8e-07 24.6 1.5 1 1 1.2e-08 1.1e-06 22.6 0.3 7 76 872 938 865 938 0.74 # 3573 # 8516 # 1 # ID=3_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 5_2 - 260 AAA_19 PF13245.1 76 0.00072 13.6 0.0 1 1 1.9e-05 0.0017 12.4 0.0 10 42 103 130 95 154 0.79 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 26_2 - 107 AAA_19 PF13245.1 76 0.0016 12.5 0.0 1 1 3e-05 0.0027 11.8 0.0 10 30 64 83 57 93 0.80 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 3_1 - 668 AAA_10 PF12846.2 304 2.8e-10 34.3 0.0 1 1 7.2e-11 4.8e-09 30.3 0.0 3 296 119 426 118 432 0.70 # 523 # 2526 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.533 5_2 - 260 AAA_10 PF12846.2 304 2e-05 18.4 0.4 1 1 3.5e-06 0.00023 14.9 0.0 1 33 102 134 102 172 0.87 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_30 - 431 AAA_10 PF12846.2 304 0.0003 14.5 0.1 1 1 1.4e-05 0.00091 13.0 0.1 5 52 156 209 153 424 0.72 # 26555 # 27847 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.391 26_2 - 107 AAA_10 PF12846.2 304 0.00049 13.9 0.1 1 2 0.085 5.7 0.5 0.1 130 169 2 43 1 57 0.66 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 26_2 - 107 AAA_10 PF12846.2 304 0.00049 13.9 0.1 2 2 3.8e-05 0.0025 11.5 0.0 1 24 63 86 63 94 0.86 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 5_2 - 260 ResIII PF04851.10 184 0.0011 13.1 0.0 1 2 0.0003 0.04 8.0 0.0 8 48 89 125 82 135 0.72 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 5_2 - 260 ResIII PF04851.10 184 0.0011 13.1 0.0 2 2 0.011 1.4 2.9 0.0 112 164 131 187 125 204 0.72 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 26_2 - 107 ResIII PF04851.10 184 0.0016 12.6 0.0 1 1 1.2e-05 0.0016 12.6 0.0 7 51 49 89 10 103 0.79 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 3_5 - 1648 Viral_helicase1 PF01443.13 234 0.0014 12.5 0.0 1 2 0.00026 0.07 6.9 0.0 1 23 879 902 879 1082 0.75 # 3573 # 8516 # 1 # ID=3_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 3_5 - 1648 Viral_helicase1 PF01443.13 234 0.0014 12.5 0.0 2 2 0.0045 1.2 2.8 0.0 166 234 1273 1338 1222 1338 0.61 # 3573 # 8516 # 1 # ID=3_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 46_2 - 135 Methyltransf_27 PF13708.1 194 0.00048 14.0 0.0 1 1 2.1e-06 0.00055 13.8 0.0 16 69 28 81 13 124 0.84 # 221 # 625 # -1 # ID=46_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.420 3_1 - 668 TrwB_AAD_bind PF10412.4 386 6.2e-150 493.3 0.0 1 1 2.8e-152 7.6e-150 493.0 0.0 2 386 104 493 103 493 0.99 # 523 # 2526 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.533 3_5 - 1648 AAA_11 PF13086.1 236 0.00032 14.6 1.9 1 1 2.6e-06 0.00068 13.5 0.0 2 75 860 930 859 950 0.80 # 3573 # 8516 # 1 # ID=3_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 3_1 - 668 T4SS-DNA_transf PF02534.9 469 1.3e-09 31.4 0.0 1 1 1.6e-11 4.3e-09 29.7 0.0 264 362 314 409 130 433 0.82 # 523 # 2526 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.533 2_4 - 754 Plug PF07715.10 108 3.9e-10 34.3 4.8 1 1 1.5e-12 3.9e-10 34.3 4.8 13 107 61 166 43 167 0.89 # 2447 # 4708 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 26_2 - 107 AAA_24 PF13479.1 213 0.0014 12.5 0.0 1 1 7.1e-06 0.0019 12.1 0.0 3 23 63 83 61 96 0.82 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 26_2 - 107 AAA_25 PF13481.1 194 4.9e-05 17.1 0.0 1 1 4.7e-07 6.2e-05 16.7 0.0 19 55 48 85 31 90 0.77 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 5_2 - 260 AAA_25 PF13481.1 194 6.2e-05 16.7 0.0 1 1 7.9e-07 0.00011 16.0 0.0 22 58 90 127 71 177 0.79 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 26_2 - 107 AAA_28 PF13521.1 163 0.0021 12.3 0.1 1 1 5.3e-05 0.0071 10.6 0.0 1 22 65 86 65 100 0.81 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 5_2 - 260 AAA_28 PF13521.1 163 0.0022 12.2 1.3 1 1 4.3e-05 0.0057 10.9 0.1 1 44 104 152 104 169 0.71 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 5_2 - 260 AAA_5 PF07728.9 139 6.8e-05 16.9 0.2 1 1 3.4e-06 0.00045 14.2 0.2 1 74 104 173 104 185 0.76 # 579 # 1358 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 26_2 - 107 AAA_5 PF07728.9 139 0.0019 12.2 0.2 1 1 3e-05 0.004 11.2 0.1 1 16 65 80 65 85 0.89 # 1184 # 1504 # -1 # ID=26_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8ee52214-6990-4485-ad81-5945d4e11c35 # Target file: checkm_output/bins/pm278/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm278/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8ee52214-6990-4485-ad81-5945d4e11c35 checkm_output/bins/pm278/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:04:17 2020 # [ok]