# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_21 - 351 Mg_chelatase PF01078.16 207 0.00017 15.4 0.0 1 2 0.0011 0.35 4.6 0.0 25 47 104 126 99 158 0.76 # 15573 # 16625 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.385 1_21 - 351 Mg_chelatase PF01078.16 207 0.00017 15.4 0.0 2 2 7.9e-05 0.026 8.2 0.0 109 164 170 226 165 244 0.83 # 15573 # 16625 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.385 3_70 - 211 RrnaAD PF00398.15 262 7.9e-05 16.3 0.0 1 1 3.1e-07 0.0001 16.0 0.0 49 94 100 146 75 176 0.82 # 41442 # 42074 # 1 # ID=3_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.458 1_43 - 456 Seryl_tRNA_N PF02403.17 108 0.00092 13.8 6.7 1 1 1.1e-05 0.0018 12.9 6.7 17 87 77 149 61 167 0.84 # 42271 # 43638 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.466 9_4 - 359 Seryl_tRNA_N PF02403.17 108 0.0032 12.1 11.6 1 3 0.004 0.66 4.6 0.1 38 104 59 126 38 130 0.89 # 2089 # 3165 # -1 # ID=9_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 9_4 - 359 Seryl_tRNA_N PF02403.17 108 0.0032 12.1 11.6 2 3 0.0014 0.23 6.1 0.1 27 59 157 189 145 211 0.84 # 2089 # 3165 # -1 # ID=9_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 9_4 - 359 Seryl_tRNA_N PF02403.17 108 0.0032 12.1 11.6 3 3 0.00078 0.13 6.9 1.6 17 107 229 318 222 319 0.76 # 2089 # 3165 # -1 # ID=9_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_60 - 416 MipZ PF09140.6 261 2.3e-12 41.1 2.4 1 2 6e-10 2e-07 24.9 0.2 1 40 115 157 115 189 0.83 # 56848 # 58095 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.385 1_60 - 416 MipZ PF09140.6 261 2.3e-12 41.1 2.4 2 2 7.3e-07 0.00024 14.8 0.0 93 130 253 290 231 301 0.83 # 56848 # 58095 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.385 1_60 - 416 YhjQ PF06564.7 244 0.00021 15.3 0.3 1 2 8.2e-05 0.027 8.4 0.1 4 44 117 160 115 168 0.73 # 56848 # 58095 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.385 1_60 - 416 YhjQ PF06564.7 244 0.00021 15.3 0.3 2 2 0.0012 0.39 4.6 0.0 113 147 255 288 229 300 0.83 # 56848 # 58095 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.385 4_5 - 561 3HCDH_N PF02737.13 180 0.017 9.4 7.4 1 2 0.004 1.3 3.2 2.8 1 30 99 128 99 134 0.93 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 4_5 - 561 3HCDH_N PF02737.13 180 0.017 9.4 7.4 2 2 9.8e-05 0.032 8.4 0.2 2 40 272 310 271 359 0.63 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 4_5 - 561 GIDA PF01134.17 392 2.2e-08 27.9 0.8 1 3 6.5e-11 2.2e-08 27.9 0.8 2 189 100 281 99 297 0.73 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 4_5 - 561 GIDA PF01134.17 392 2.2e-08 27.9 0.8 2 3 0.074 24 -1.9 0.0 141 173 339 368 313 380 0.66 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 4_5 - 561 GIDA PF01134.17 392 2.2e-08 27.9 0.8 3 3 0.034 11 -0.8 0.0 350 384 390 424 383 427 0.75 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_25 - 600 UvrD_C_2 PF13538.1 104 2.5e-10 35.0 0.0 1 1 3.8e-12 6.2e-10 33.8 0.0 44 103 494 563 463 564 0.84 # 19372 # 21171 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 2_39 - 223 UvrD_C_2 PF13538.1 104 1.7e-06 22.8 0.0 1 1 1.8e-08 2.9e-06 22.0 0.0 60 104 127 177 93 177 0.84 # 41208 # 41876 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.507 4_5 - 561 Pyr_redox_2 PF07992.9 201 1.4e-40 133.9 0.6 1 1 7.9e-43 2.6e-40 133.0 0.6 2 199 100 406 99 408 0.95 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_21 - 351 AAA_2 PF07724.9 171 2.3e-07 25.5 0.0 1 1 1.8e-09 6e-07 24.1 0.0 6 83 104 182 100 188 0.69 # 15573 # 16625 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.385 2_26 - 709 DUF87 PF01935.12 229 4.3e-07 24.5 0.0 1 1 3.7e-09 1.2e-06 23.1 0.0 10 68 201 257 196 298 0.87 # 23449 # 25575 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.462 2_26 - 709 AAA_22 PF13401.1 131 2.6e-06 22.2 0.1 1 2 8e-05 0.0066 11.2 0.0 5 57 214 261 213 352 0.79 # 23449 # 25575 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.462 2_26 - 709 AAA_22 PF13401.1 131 2.6e-06 22.2 0.1 2 2 0.00076 0.063 8.0 0.0 48 113 482 540 449 559 0.68 # 23449 # 25575 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.462 3_80 - 164 AAA_22 PF13401.1 131 0.00026 15.8 1.0 1 2 3.4e-05 0.0028 12.4 0.1 7 22 35 50 32 71 0.89 # 47217 # 47708 # 1 # ID=3_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 3_80 - 164 AAA_22 PF13401.1 131 0.00026 15.8 1.0 2 2 0.045 3.8 2.3 0.1 91 125 79 112 56 118 0.81 # 47217 # 47708 # 1 # ID=3_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_25 - 600 AAA_22 PF13401.1 131 0.00028 15.6 0.4 1 1 9.8e-05 0.0081 10.9 0.0 7 55 19 66 14 127 0.70 # 19372 # 21171 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 1_21 - 351 AAA_22 PF13401.1 131 0.00047 14.9 0.2 1 1 8.6e-05 0.0071 11.1 0.2 7 37 104 137 101 194 0.73 # 15573 # 16625 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.385 3_10 - 472 DNA_methylase PF00145.12 335 1.3e-79 262.3 0.0 1 1 5.9e-82 2e-79 261.7 0.0 1 332 96 458 96 461 0.88 # 4684 # 6099 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_21 - 351 DNA_pol3_delta2 PF13177.1 162 0.0017 12.6 0.0 1 1 1.2e-05 0.004 11.4 0.0 10 96 92 185 84 200 0.71 # 15573 # 16625 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.385 1_21 - 351 AAA_3 PF07726.6 131 0.0001 16.5 0.0 1 1 5.4e-07 0.00018 15.7 0.0 3 87 105 192 103 225 0.86 # 15573 # 16625 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.385 2_6 - 598 AAA_15 PF13175.1 415 1.5e-18 61.6 6.4 1 2 4.5e-08 1.5e-05 18.8 4.1 2 57 4 80 3 198 0.58 # 5766 # 7559 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 2_6 - 598 AAA_15 PF13175.1 415 1.5e-18 61.6 6.4 2 2 3.4e-15 1.1e-12 42.2 0.0 272 415 224 396 216 396 0.73 # 5766 # 7559 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 4_5 - 561 NAD_binding_7 PF13241.1 103 1.4e-06 23.1 1.2 1 2 1.8e-05 0.003 12.5 0.1 6 39 96 129 94 185 0.88 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 4_5 - 561 NAD_binding_7 PF13241.1 103 1.4e-06 23.1 1.2 2 2 0.00021 0.035 9.0 0.1 8 41 270 306 263 381 0.73 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 2_3 - 578 NAD_binding_7 PF13241.1 103 0.00024 16.0 0.0 1 1 3.2e-06 0.00052 14.9 0.0 5 79 318 428 316 442 0.67 # 1984 # 3717 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.429 3_32 - 415 N6_N4_Mtase PF01555.13 231 1.1e-27 91.6 0.0 1 1 4.8e-30 1.6e-27 91.1 0.0 1 227 128 388 128 392 0.90 # 16578 # 17822 # 1 # ID=3_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_21 - 351 AAA_17 PF13207.1 121 0.00014 17.3 0.0 1 1 1.8e-06 0.0006 15.2 0.0 2 47 104 154 104 213 0.67 # 15573 # 16625 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.385 2_6 - 598 AAA_21 PF13304.1 303 5e-20 67.2 7.6 1 1 2.9e-21 9.7e-19 62.9 7.6 2 303 25 397 24 397 0.70 # 5766 # 7559 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_60 - 416 ArsA_ATPase PF02374.10 305 3.1e-06 21.0 1.1 1 1 2.9e-08 9.6e-06 19.4 0.2 8 136 122 268 115 273 0.63 # 56848 # 58095 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.385 1_25 - 600 PhoH PF02562.11 205 4.9e-06 20.5 0.5 1 3 0.0018 0.2 5.4 0.0 5 40 4 37 1 77 0.74 # 19372 # 21171 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 1_25 - 600 PhoH PF02562.11 205 4.9e-06 20.5 0.5 2 3 0.00021 0.023 8.5 0.0 100 176 172 245 128 260 0.72 # 19372 # 21171 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 1_25 - 600 PhoH PF02562.11 205 4.9e-06 20.5 0.5 3 3 0.0093 1 3.1 0.1 61 107 397 443 387 457 0.83 # 19372 # 21171 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 3_80 - 164 PhoH PF02562.11 205 0.0015 12.3 0.0 1 1 2.5e-05 0.0027 11.5 0.0 11 37 24 50 14 58 0.80 # 47217 # 47708 # 1 # ID=3_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 4_17 - 381 PhoH PF02562.11 205 0.0041 10.9 0.0 1 1 5.9e-05 0.0065 10.3 0.0 17 56 154 194 147 206 0.83 # 10415 # 11557 # -1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 3_80 - 164 T2SE PF00437.15 272 0.0035 10.8 0.0 1 1 1.6e-05 0.0053 10.2 0.0 114 149 19 53 3 66 0.82 # 47217 # 47708 # 1 # ID=3_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 2_3 - 578 Shikimate_DH PF01488.15 135 0.0015 13.3 0.0 1 2 3.1e-05 0.01 10.5 0.0 8 56 316 364 311 382 0.77 # 1984 # 3717 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.429 2_3 - 578 Shikimate_DH PF01488.15 135 0.0015 13.3 0.0 2 2 0.068 23 -0.3 0.0 71 93 405 429 393 443 0.75 # 1984 # 3717 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.429 4_5 - 561 NAD_binding_8 PF13450.1 68 0.00025 15.6 1.0 1 2 7.6e-07 0.00025 15.6 1.0 1 35 102 135 102 155 0.90 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 4_5 - 561 NAD_binding_8 PF13450.1 68 0.00025 15.6 1.0 2 2 0.066 22 -0.2 0.1 1 25 274 298 274 303 0.79 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 4_5 - 561 F420_oxidored PF03807.12 96 0.022 9.8 4.3 1 2 0.002 0.66 5.1 1.0 2 34 100 128 99 131 0.88 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 4_5 - 561 F420_oxidored PF03807.12 96 0.022 9.8 4.3 2 2 0.0041 1.3 4.1 0.0 1 35 271 301 271 339 0.86 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 2_6 - 598 SMC_N PF02463.14 220 2e-08 28.3 0.0 1 1 1.2e-10 4e-08 27.3 0.0 2 52 3 50 2 82 0.87 # 5766 # 7559 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_60 - 416 Fer4_NifH PF00142.13 273 9.7e-05 16.2 0.0 1 1 6.8e-07 0.00023 15.0 0.0 8 77 123 197 115 206 0.73 # 56848 # 58095 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.385 3_80 - 164 AAA_16 PF13191.1 185 0.00051 14.6 0.2 1 1 3.1e-06 0.001 13.7 0.0 21 43 29 51 19 69 0.82 # 47217 # 47708 # 1 # ID=3_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 2_6 - 598 AAA_23 PF13476.1 202 8e-11 37.2 4.8 1 1 2.4e-13 8e-11 37.2 4.8 2 156 6 219 5 272 0.43 # 5766 # 7559 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_21 - 351 AAA_18 PF13238.1 129 3.8e-05 18.6 0.5 1 1 6.5e-07 0.00011 17.2 0.0 1 81 104 176 104 206 0.66 # 15573 # 16625 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.385 2_26 - 709 AAA_18 PF13238.1 129 0.0028 12.6 0.0 1 1 3.6e-05 0.006 11.5 0.0 2 38 217 256 217 291 0.79 # 23449 # 25575 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.462 9_4 - 359 AAA_13 PF13166.1 712 0.0023 11.0 17.6 1 2 1.1e-05 0.0037 10.3 2.8 364 468 83 189 37 201 0.52 # 2089 # 3165 # -1 # ID=9_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 9_4 - 359 AAA_13 PF13166.1 712 0.0023 11.0 17.6 2 2 0.00033 0.11 5.4 8.5 321 439 224 352 182 358 0.75 # 2089 # 3165 # -1 # ID=9_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_60 - 416 CbiA PF01656.18 195 1.1e-23 78.2 0.1 1 1 5.4e-26 1.8e-23 77.6 0.1 1 190 117 359 117 364 0.74 # 56848 # 58095 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.385 4_5 - 561 HI0933_like PF03486.9 409 1.6e-07 24.7 4.6 1 2 1.6e-06 0.00052 13.1 2.7 2 33 99 130 98 138 0.91 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 4_5 - 561 HI0933_like PF03486.9 409 1.6e-07 24.7 4.6 2 2 6.9e-06 0.0023 11.0 0.0 83 164 285 362 280 382 0.85 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 2_6 - 598 AAA_29 PF13555.1 62 2.5e-06 21.6 0.3 1 1 4.5e-08 7.5e-06 20.0 0.0 12 50 11 49 2 54 0.80 # 5766 # 7559 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 3_80 - 164 AAA_29 PF13555.1 62 0.0033 11.6 0.0 1 1 3.8e-05 0.0062 10.7 0.0 26 40 35 49 21 65 0.76 # 47217 # 47708 # 1 # ID=3_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 4_5 - 561 FAD_binding_2 PF00890.19 417 8.7e-06 19.3 4.9 1 3 2.6e-08 8.7e-06 19.3 4.9 2 32 100 130 99 137 0.91 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 4_5 - 561 FAD_binding_2 PF00890.19 417 8.7e-06 19.3 4.9 2 3 0.0081 2.7 1.3 0.7 142 209 310 372 298 385 0.74 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 4_5 - 561 FAD_binding_2 PF00890.19 417 8.7e-06 19.3 4.9 3 3 0.039 13 -1.0 0.0 374 402 374 404 368 417 0.80 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_21 - 351 AAA PF00004.24 132 5.5e-06 21.2 0.0 1 1 4.3e-08 1.4e-05 19.9 0.0 1 74 104 183 104 195 0.70 # 15573 # 16625 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.385 1_25 - 600 UvrD_C PF13361.1 351 1.7e-40 134.1 0.0 1 1 8e-43 2.6e-40 133.5 0.0 1 349 253 566 253 568 0.87 # 19372 # 21171 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 1_21 - 351 Sigma54_activat PF00158.21 168 0.00024 15.2 0.0 1 1 1.3e-05 0.0044 11.1 0.0 21 120 100 194 83 225 0.73 # 15573 # 16625 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.385 4_5 - 561 Pyr_redox_3 PF13738.1 203 1.1e-17 59.3 0.1 1 2 2.1e-14 7e-12 40.4 0.1 1 201 101 303 101 305 0.73 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 4_5 - 561 Pyr_redox_3 PF13738.1 203 1.1e-17 59.3 0.1 2 2 4.5e-07 0.00015 16.5 0.0 89 147 316 371 308 429 0.82 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 2_6 - 598 MMR_HSR1 PF01926.18 116 0.0028 12.2 0.0 1 1 2.6e-05 0.0087 10.6 0.0 3 20 26 43 24 86 0.76 # 5766 # 7559 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 3_80 - 164 DUF258 PF03193.11 161 0.003 11.3 0.0 1 1 1.1e-05 0.0038 11.0 0.0 34 59 30 56 3 85 0.73 # 47217 # 47708 # 1 # ID=3_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 2_26 - 709 TraG-D_C PF12696.2 128 3e-12 41.1 2.3 1 1 1.6e-14 5.4e-12 40.3 1.4 1 100 518 623 518 643 0.81 # 23449 # 25575 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.462 1_60 - 416 AAA_31 PF13614.1 157 1.8e-07 25.8 0.2 1 1 6.9e-09 2.3e-06 22.2 0.1 2 128 116 269 115 293 0.78 # 56848 # 58095 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.385 3_32 - 415 Methyltransf_26 PF13659.1 117 2.4e-05 19.0 0.0 1 2 1.3e-06 0.00043 14.9 0.0 59 114 117 179 35 182 0.73 # 16578 # 17822 # 1 # ID=3_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 3_32 - 415 Methyltransf_26 PF13659.1 117 2.4e-05 19.0 0.0 2 2 0.02 6.6 1.4 0.0 3 21 355 373 353 406 0.72 # 16578 # 17822 # 1 # ID=3_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 2_3 - 578 2-Hacid_dh_C PF02826.14 178 0.00038 14.2 0.0 1 1 2.2e-06 0.00073 13.3 0.0 28 69 312 354 302 373 0.84 # 1984 # 3717 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.429 1_25 - 600 AAA_30 PF13604.1 196 7.4e-08 26.8 0.0 1 2 3.2e-07 0.00011 16.4 0.0 4 82 6 92 3 111 0.75 # 19372 # 21171 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 1_25 - 600 AAA_30 PF13604.1 196 7.4e-08 26.8 0.0 2 2 0.00012 0.04 8.1 0.0 95 133 191 228 173 282 0.82 # 19372 # 21171 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 11_3 - 265 RRM_6 PF14259.1 70 0.00053 14.6 0.0 1 1 5e-06 0.0016 13.0 0.0 24 64 35 70 7 75 0.75 # 1777 # 2571 # -1 # ID=11_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 2_26 - 709 FtsK_SpoIIIE PF01580.13 205 0.00012 16.2 0.2 1 2 5.1e-06 0.0017 12.4 0.0 33 80 205 251 175 257 0.82 # 23449 # 25575 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.462 2_26 - 709 FtsK_SpoIIIE PF01580.13 205 0.00012 16.2 0.2 2 2 0.016 5.4 1.0 0.1 175 204 527 556 514 557 0.85 # 23449 # 25575 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.462 2_6 - 598 DUF2813 PF11398.3 373 2.2e-13 44.5 0.0 1 2 1.1e-10 3.7e-08 27.4 0.0 1 52 1 52 1 125 0.90 # 5766 # 7559 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 2_6 - 598 DUF2813 PF11398.3 373 2.2e-13 44.5 0.0 2 2 5.6e-07 0.00019 15.2 0.0 179 345 250 417 230 449 0.70 # 5766 # 7559 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 2_6 - 598 Dynamin_N PF00350.18 168 0.0042 11.5 1.1 1 2 0.00016 0.054 7.9 0.0 3 18 27 42 26 91 0.91 # 5766 # 7559 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 2_6 - 598 Dynamin_N PF00350.18 168 0.0042 11.5 1.1 2 2 0.029 9.7 0.6 0.0 26 80 384 436 376 491 0.72 # 5766 # 7559 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 2_6 - 598 ABC_tran PF00005.22 137 9.9e-05 17.3 0.0 1 1 1.9e-06 0.00031 15.7 0.0 6 38 17 49 13 194 0.61 # 5766 # 7559 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 3_80 - 164 ABC_tran PF00005.22 137 0.0013 13.7 0.0 1 1 9.6e-06 0.0016 13.4 0.0 14 42 35 64 26 115 0.80 # 47217 # 47708 # 1 # ID=3_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_25 - 600 AAA_19 PF13245.1 76 2.1e-06 22.1 0.0 1 1 1.2e-08 4.1e-06 21.1 0.0 10 75 17 86 9 87 0.79 # 19372 # 21171 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 1_39 - 906 AAA_10 PF12846.2 304 1.5e-57 189.9 0.0 1 1 4.2e-59 3.5e-57 188.7 0.0 1 296 462 811 462 820 0.91 # 37431 # 40148 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.419 2_26 - 709 AAA_10 PF12846.2 304 2.3e-20 67.8 0.0 1 1 8.3e-22 6.9e-20 66.2 0.0 2 295 214 591 213 597 0.73 # 23449 # 25575 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.462 3_80 - 164 AAA_10 PF12846.2 304 0.00085 13.4 0.0 1 1 1.2e-05 0.001 13.1 0.0 2 22 33 53 32 85 0.86 # 47217 # 47708 # 1 # ID=3_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_25 - 600 AAA_10 PF12846.2 304 0.0017 12.4 0.1 1 1 4.6e-05 0.0038 11.2 0.0 3 28 18 43 16 61 0.85 # 19372 # 21171 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 2_39 - 223 AAA_12 PF13087.1 200 5.4e-12 40.1 0.0 1 1 1.4e-13 2.4e-11 38.0 0.0 23 198 24 179 9 181 0.76 # 41208 # 41876 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.507 1_25 - 600 AAA_12 PF13087.1 200 7.1e-05 16.8 0.1 1 3 0.019 3.1 1.7 0.0 111 152 45 86 4 88 0.83 # 19372 # 21171 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 1_25 - 600 AAA_12 PF13087.1 200 7.1e-05 16.8 0.1 2 3 0.037 6.2 0.7 0.0 6 48 241 283 238 339 0.76 # 19372 # 21171 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 1_25 - 600 AAA_12 PF13087.1 200 7.1e-05 16.8 0.1 3 3 4.5e-05 0.0074 10.2 0.0 135 196 496 564 375 568 0.78 # 19372 # 21171 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 4_5 - 561 FAD_oxidored PF12831.2 428 9.3e-06 19.5 3.1 1 2 2.8e-08 9.3e-06 19.5 3.1 2 41 100 138 99 168 0.84 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 4_5 - 561 FAD_oxidored PF12831.2 428 9.3e-06 19.5 3.1 2 2 0.013 4.3 0.8 0.0 85 120 305 340 258 364 0.64 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 4_5 - 561 DAO PF01266.19 358 1.7e-11 38.1 9.4 1 3 9.2e-09 3e-06 20.9 0.5 1 38 99 134 99 189 0.87 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 4_5 - 561 DAO PF01266.19 358 1.7e-11 38.1 9.4 2 3 0.065 21 -1.6 0.0 3 31 273 301 271 305 0.73 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 4_5 - 561 DAO PF01266.19 358 1.7e-11 38.1 9.4 3 3 4.6e-09 1.5e-06 21.9 0.5 152 201 314 362 305 413 0.87 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 2_3 - 578 ThiF PF00899.16 136 2.2e-19 64.2 0.0 1 1 2.2e-21 3.6e-19 63.5 0.0 2 128 320 447 319 455 0.90 # 1984 # 3717 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.429 3_84 - 743 ThiF PF00899.16 136 5.1e-12 40.4 0.0 1 1 7.3e-14 1.2e-11 39.2 0.0 6 107 371 474 367 490 0.87 # 49524 # 51752 # -1 # ID=3_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.445 1_25 - 600 Viral_helicase1 PF01443.13 234 3.5e-06 21.3 0.0 1 2 0.0015 0.24 5.4 0.0 2 51 20 71 19 87 0.57 # 19372 # 21171 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 1_25 - 600 Viral_helicase1 PF01443.13 234 3.5e-06 21.3 0.0 2 2 7.6e-06 0.0013 12.9 0.0 175 232 499 563 490 564 0.87 # 19372 # 21171 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 2_39 - 223 Viral_helicase1 PF01443.13 234 3e-05 18.2 0.0 1 1 2.2e-07 3.7e-05 17.9 0.0 183 233 121 177 76 178 0.82 # 41208 # 41876 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.507 1_21 - 351 TIP49 PF06068.8 398 0.00083 12.7 0.0 1 1 5e-06 0.0016 11.7 0.0 41 83 93 134 89 141 0.80 # 15573 # 16625 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.385 4_5 - 561 Pyr_redox PF00070.22 80 1.3e-19 65.0 5.9 1 2 2.7e-06 0.00091 14.2 1.6 1 31 99 129 99 131 0.96 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 4_5 - 561 Pyr_redox PF00070.22 80 1.3e-19 65.0 5.9 2 2 4.7e-18 1.5e-15 52.0 0.1 1 72 271 340 271 350 0.91 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 2_26 - 709 DUF853 PF05872.7 504 1.3e-05 18.3 0.0 1 1 8.8e-08 2.9e-05 17.1 0.0 12 60 204 252 195 260 0.87 # 23449 # 25575 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.462 3_48 - 290 Methyltransf_27 PF13708.1 194 8.7e-58 189.6 0.0 1 1 1.3e-59 2.2e-57 188.3 0.1 2 194 89 285 88 285 0.94 # 30902 # 31771 # 1 # ID=3_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 2_59 - 265 Methyltransf_27 PF13708.1 194 1.5e-23 77.9 0.5 1 1 1.2e-25 2e-23 77.5 0.5 5 189 70 255 66 260 0.87 # 55618 # 56412 # -1 # ID=2_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.397 2_26 - 709 TrwB_AAD_bind PF10412.4 386 5.9e-19 62.5 0.0 1 2 1.9e-08 6.2e-06 19.6 0.0 16 130 214 335 201 357 0.75 # 23449 # 25575 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.462 2_26 - 709 TrwB_AAD_bind PF10412.4 386 5.9e-19 62.5 0.0 2 2 8.5e-15 2.8e-12 40.5 0.1 205 371 473 650 464 661 0.76 # 23449 # 25575 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.462 3_27 - 175 Sigma54_activ_2 PF14532.1 138 0.0026 12.4 0.5 1 1 3.6e-05 0.012 10.3 0.5 63 124 108 173 69 174 0.64 # 14181 # 14705 # 1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 4_7 - 92 RRM_3 PF08777.6 105 0.0021 12.5 0.0 1 1 8.1e-06 0.0027 12.2 0.0 4 61 26 80 24 88 0.80 # 3682 # 3957 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 3_70 - 211 TIGR00755 TIGR00755 256 0.00016 15.3 0.2 1 2 0.026 8.6 -0.2 0.0 95 108 59 72 24 86 0.79 # 41442 # 42074 # 1 # ID=3_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.458 3_70 - 211 TIGR00755 TIGR00755 256 0.00016 15.3 0.2 2 2 1.6e-06 0.00054 13.6 0.1 36 87 87 140 70 152 0.83 # 41442 # 42074 # 1 # ID=3_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.458 1_21 - 351 RNA_helicase PF00910.17 107 9.5e-05 17.2 0.1 1 1 1.6e-06 0.00052 14.8 0.0 1 64 104 182 104 192 0.81 # 15573 # 16625 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.385 4_5 - 561 AlaDh_PNT_C PF01262.16 168 0.0046 11.1 5.3 1 2 0.002 0.67 4.1 1.7 21 50 98 127 88 130 0.89 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 4_5 - 561 AlaDh_PNT_C PF01262.16 168 0.0046 11.1 5.3 2 2 0.00013 0.042 8.0 0.1 19 60 268 309 259 346 0.85 # 1526 # 3208 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_25 - 600 UvrD-helicase PF00580.16 315 2.1e-32 107.2 2.0 1 2 1.9e-15 6.3e-13 43.2 0.0 2 109 5 95 4 127 0.88 # 19372 # 21171 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 1_25 - 600 UvrD-helicase PF00580.16 315 2.1e-32 107.2 2.0 2 2 1.6e-21 5.3e-19 63.2 0.6 211 314 148 248 135 249 0.90 # 19372 # 21171 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 1_21 - 351 NACHT PF05729.7 166 0.0033 11.7 0.1 1 1 2.9e-05 0.0096 10.2 0.0 3 21 104 122 103 128 0.85 # 15573 # 16625 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.385 3_70 - 211 Spermine_synth PF01564.12 246 4.8e-05 17.0 0.1 1 1 2.1e-07 6.9e-05 16.4 0.1 79 157 83 154 57 160 0.87 # 41442 # 42074 # 1 # ID=3_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.458 1_21 - 351 AAA_5 PF07728.9 139 5.6e-33 108.2 0.0 1 1 3.1e-35 1e-32 107.4 0.0 2 139 104 243 103 243 0.94 # 15573 # 16625 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.385 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/21b763d5-d00f-43df-9b2a-0b2bbbedd737 # Target file: checkm_output/bins/pm254/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm254/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/21b763d5-d00f-43df-9b2a-0b2bbbedd737 checkm_output/bins/pm254/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:04:05 2020 # [ok]