# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_10 - 442 3HCDH_N PF02737.13 180 4.8e-12 36.2 0.4 1 2 3.1e-06 5e-05 13.3 0.1 2 34 6 38 5 72 0.91 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 3HCDH_N PF02737.13 180 4.8e-12 36.2 0.4 2 2 1.2e-08 2e-07 21.1 0.0 2 75 161 233 160 249 0.79 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 GIDA PF01134.17 392 5.1e-09 25.6 1.4 1 3 7.7e-08 1.2e-06 17.8 1.0 2 46 6 54 5 69 0.89 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 GIDA PF01134.17 392 5.1e-09 25.6 1.4 2 3 0.025 0.4 -0.3 0.0 103 150 84 129 65 138 0.82 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 GIDA PF01134.17 392 5.1e-09 25.6 1.4 3 3 0.0011 0.018 4.1 0.0 4 28 163 187 160 212 0.82 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 Pyr_redox_2 PF07992.9 201 8.5e-38 120.5 6.0 1 1 4.6e-37 7.4e-36 114.2 6.0 2 199 6 296 5 298 0.94 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 NAD_binding_7 PF13241.1 103 8.2e-07 19.6 0.2 1 2 9.2e-05 0.0015 9.2 0.0 8 40 4 36 1 94 0.71 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 NAD_binding_7 PF13241.1 103 8.2e-07 19.6 0.2 2 2 0.00026 0.0042 7.7 0.0 11 53 162 231 157 269 0.69 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_4 - 892 AAA_21 PF13304.1 303 5.5e-08 23.3 0.0 1 2 2.4e-05 0.00038 10.7 0.0 2 72 286 347 285 362 0.75 # 1762 # 4437 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_4 - 892 AAA_21 PF13304.1 303 5.5e-08 23.3 0.0 2 2 2.9e-05 0.00047 10.4 0.0 146 300 667 835 656 838 0.74 # 1762 # 4437 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_4 - 892 MobB PF03205.9 140 0.0001 12.4 0.0 1 1 1.4e-05 0.00023 11.2 0.0 4 20 287 303 284 316 0.83 # 1762 # 4437 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_10 - 442 NAD_binding_8 PF13450.1 68 3.9e-07 20.5 0.7 1 2 6.2e-06 9.8e-05 12.7 0.1 1 33 8 41 8 71 0.89 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 NAD_binding_8 PF13450.1 68 3.9e-07 20.5 0.7 2 2 0.0012 0.019 5.4 0.1 1 29 163 191 163 193 0.94 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 F420_oxidored PF03807.12 96 7.6e-05 13.5 6.8 1 2 5e-05 0.00081 10.2 0.2 3 31 7 32 5 65 0.84 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 F420_oxidored PF03807.12 96 7.6e-05 13.5 6.8 2 2 0.0017 0.027 5.3 0.5 2 33 161 189 160 249 0.90 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 FAD_binding_3 PF01494.14 356 2e-06 17.3 0.4 1 2 2e-06 3.2e-05 13.3 0.1 2 35 4 37 3 42 0.91 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 FAD_binding_3 PF01494.14 356 2e-06 17.3 0.4 2 2 0.006 0.096 1.9 0.0 6 37 163 194 160 271 0.71 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_4 - 892 SMC_N PF02463.14 220 1.3e-11 34.5 0.0 1 1 5e-12 8e-11 31.8 0.0 16 217 275 851 267 853 0.91 # 1762 # 4437 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_4 - 892 AAA_16 PF13191.1 185 0.00051 10.3 0.0 1 1 3.2e-05 0.00051 10.3 0.0 29 51 288 310 282 323 0.83 # 1762 # 4437 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_4 - 892 AAA_23 PF13476.1 202 1.8e-09 28.5 0.0 1 1 2e-10 3.2e-09 27.7 0.0 12 150 276 473 263 597 0.63 # 1762 # 4437 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_10 - 442 HI0933_like PF03486.9 409 4.1e-11 32.2 0.1 1 2 5.4e-06 8.6e-05 11.4 0.0 2 35 5 38 4 82 0.90 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 HI0933_like PF03486.9 409 4.1e-11 32.2 0.1 2 2 3.2e-08 5.1e-07 18.7 0.0 81 164 172 252 167 271 0.91 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_4 - 892 AAA_29 PF13555.1 62 5.3e-06 16.3 0.1 1 1 8.4e-07 1.3e-05 15.0 0.1 26 47 286 307 274 319 0.79 # 1762 # 4437 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_10 - 442 FAD_binding_2 PF00890.19 417 1.8e-06 17.3 3.0 1 2 2e-07 3.2e-06 16.4 0.2 2 41 6 45 5 69 0.89 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 FAD_binding_2 PF00890.19 417 1.8e-06 17.3 3.0 2 2 0.013 0.2 0.6 0.2 370 407 260 298 218 302 0.78 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 Thi4 PF01946.12 230 2e-07 20.6 0.2 1 2 1.5e-07 2.4e-06 17.1 0.0 20 57 6 43 1 73 0.84 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 Thi4 PF01946.12 230 2e-07 20.6 0.2 2 2 0.014 0.22 0.8 0.0 22 48 163 189 154 193 0.91 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 Pyr_redox_3 PF13738.1 203 2e-11 34.6 0.4 1 2 7.2e-05 0.0011 9.3 0.1 1 56 7 64 7 194 0.52 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 Pyr_redox_3 PF13738.1 203 2e-11 34.6 0.4 2 2 2.5e-07 3.9e-06 17.3 0.0 82 155 199 267 193 287 0.86 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 NAD_binding_2 PF03446.10 163 8e-05 12.8 0.1 1 2 2.7e-05 0.00044 10.4 0.0 6 36 8 38 3 97 0.76 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 NAD_binding_2 PF03446.10 163 8e-05 12.8 0.1 2 2 0.055 0.88 -0.3 0.0 4 31 161 188 159 251 0.87 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 NAD_Gly3P_dh_N PF01210.18 157 1.9e-06 18.0 0.1 1 2 4.7e-05 0.00075 9.6 0.1 3 73 7 74 5 93 0.63 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 NAD_Gly3P_dh_N PF01210.18 157 1.9e-06 18.0 0.1 2 2 0.00069 0.011 5.8 0.0 3 28 162 187 160 237 0.87 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 2-Hacid_dh_C PF02826.14 178 3.4e-08 23.1 1.0 1 2 7.3e-05 0.0012 8.4 0.0 38 69 5 36 1 88 0.85 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 2-Hacid_dh_C PF02826.14 178 3.4e-08 23.1 1.0 2 2 3.1e-06 5e-05 12.8 0.2 38 67 160 189 151 252 0.88 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 XdhC_C PF13478.1 136 1.6e-07 22.0 0.1 1 2 3.5e-05 0.00056 10.6 0.0 2 47 7 53 6 81 0.75 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 XdhC_C PF13478.1 136 1.6e-07 22.0 0.1 2 2 0.0001 0.0016 9.1 0.0 1 68 161 241 161 259 0.59 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 ApbA PF02558.11 151 7.3e-06 15.8 1.5 1 2 2.8e-06 4.5e-05 13.2 0.0 2 31 7 36 6 81 0.86 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 ApbA PF02558.11 151 7.3e-06 15.8 1.5 2 2 0.022 0.35 0.6 0.1 2 27 162 187 161 194 0.90 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 Lycopene_cycl PF05834.7 374 5.6e-06 15.7 1.1 1 2 1.1e-05 0.00018 10.7 0.1 3 36 7 38 5 43 0.90 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 Lycopene_cycl PF05834.7 374 5.6e-06 15.7 1.1 2 2 0.0018 0.028 3.5 0.1 96 142 212 257 197 271 0.74 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_4 - 892 ABC_tran PF00005.22 137 1.9e-06 18.5 0.0 1 1 2.9e-07 4.6e-06 17.3 0.0 15 68 287 342 277 455 0.83 # 1762 # 4437 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_10 - 442 UDPG_MGDP_dh_N PF03721.9 185 6.7e-07 19.2 1.4 1 2 0.00081 0.013 5.2 0.1 4 32 7 35 5 42 0.91 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 UDPG_MGDP_dh_N PF03721.9 185 6.7e-07 19.2 1.4 2 2 4.6e-06 7.4e-05 12.5 0.1 4 30 162 188 160 193 0.91 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 DAO PF01266.19 358 7.2e-14 41.6 1.3 1 3 5.6e-08 9e-07 18.3 0.0 2 41 6 45 5 110 0.82 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 DAO PF01266.19 358 7.2e-14 41.6 1.3 2 3 0.0004 0.0064 5.6 0.1 4 31 163 190 160 193 0.92 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 DAO PF01266.19 358 7.2e-14 41.6 1.3 3 3 3.8e-07 6.1e-06 15.6 0.1 148 233 200 284 197 370 0.70 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 Pyr_redox PF00070.22 80 3.9e-27 84.9 0.8 1 2 0.00033 0.0052 7.6 0.2 2 33 6 37 5 43 0.92 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 Pyr_redox PF00070.22 80 3.9e-27 84.9 0.8 2 2 2.4e-25 3.9e-24 75.3 0.0 1 78 160 235 160 238 0.95 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 TrkA_N PF02254.13 116 9.2e-07 19.2 0.7 1 2 3.1e-06 4.9e-05 13.7 0.0 2 31 7 36 6 40 0.91 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 442 TrkA_N PF02254.13 116 9.2e-07 19.2 0.7 2 2 0.011 0.17 2.3 0.0 3 31 163 191 162 227 0.82 # 9090 # 10415 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3cec6a25-9aeb-46eb-92a9-0ccb248f3657 # Target file: checkm_output/bins/pm250/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm250/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3cec6a25-9aeb-46eb-92a9-0ccb248f3657 checkm_output/bins/pm250/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:03:58 2020 # [ok]