# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_22 - 254 UPF0020 PF01170.13 180 0.00013 16.0 0.0 1 1 1.8e-06 0.00054 14.0 0.0 15 126 87 185 76 221 0.72 # 14905 # 15666 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 1_7 - 203 RrnaAD PF00398.15 262 4e-05 17.1 0.0 1 1 2.1e-07 6.2e-05 16.5 0.0 47 92 98 144 80 183 0.85 # 4348 # 4956 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.499 1_56 - 418 MipZ PF09140.6 261 1.4e-11 38.4 0.1 1 2 1.4e-08 4.2e-06 20.4 0.1 2 39 116 156 115 170 0.78 # 52814 # 54067 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 1_56 - 418 MipZ PF09140.6 261 1.4e-11 38.4 0.1 2 2 5.4e-07 0.00016 15.2 0.0 77 126 236 287 213 297 0.75 # 52814 # 54067 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 1_56 - 418 YhjQ PF06564.7 244 0.0022 11.8 0.2 1 2 0.00059 0.17 5.6 0.1 6 41 119 157 115 170 0.78 # 52814 # 54067 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 1_56 - 418 YhjQ PF06564.7 244 0.0022 11.8 0.2 2 2 0.002 0.59 3.8 0.0 115 149 257 291 233 297 0.83 # 52814 # 54067 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 2_22 - 562 3HCDH_N PF02737.13 180 0.047 7.7 6.6 1 2 0.0086 2.6 2.1 2.8 1 30 100 129 100 133 0.93 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 3HCDH_N PF02737.13 180 0.047 7.7 6.6 2 2 0.0003 0.088 6.9 0.1 2 36 273 307 272 359 0.75 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 GIDA PF01134.17 392 7.7e-06 19.4 5.3 1 2 2.6e-08 7.7e-06 19.4 5.3 1 53 100 154 100 290 0.87 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 GIDA PF01134.17 392 7.7e-06 19.4 5.3 2 2 0.01 3 1.0 0.3 349 385 390 426 376 430 0.79 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 126 SSB PF00436.20 104 0.0015 12.8 0.1 1 2 3.3e-05 0.0099 10.2 0.1 2 83 8 87 7 94 0.74 # 8846 # 9223 # 1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 4_7 - 126 SSB PF00436.20 104 0.0015 12.8 0.1 2 2 0.033 9.8 0.6 0.0 43 60 92 109 88 112 0.83 # 8846 # 9223 # 1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_22 - 254 Methyltransf_18 PF12847.2 112 5.5e-06 21.4 0.0 1 1 3.5e-08 1e-05 20.5 0.0 3 107 102 198 100 203 0.77 # 14905 # 15666 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 4_5 - 595 UvrD_C_2 PF13538.1 104 2.5e-12 41.3 0.0 1 1 4e-14 5.9e-12 40.1 0.0 47 103 496 562 450 563 0.79 # 5737 # 7521 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 2_41 - 680 UvrD_C_2 PF13538.1 104 6e-11 36.9 0.0 1 1 1.4e-12 2.1e-10 35.1 0.0 23 104 505 607 490 607 0.83 # 34004 # 36043 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 2_22 - 562 Pyr_redox_2 PF07992.9 201 2.1e-42 139.7 0.0 1 1 1.6e-44 4.7e-42 138.6 0.0 1 199 100 407 100 409 0.96 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 5_6 - 276 Usp PF00582.21 140 6.8e-39 127.7 0.1 1 3 4e-19 1.2e-16 55.6 0.1 1 140 1 152 1 152 0.93 # 4671 # 5498 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.517 5_6 - 276 Usp PF00582.21 140 6.8e-39 127.7 0.1 2 3 0.001 0.31 5.7 0.0 4 24 160 180 158 200 0.74 # 4671 # 5498 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.517 5_6 - 276 Usp PF00582.21 140 6.8e-39 127.7 0.1 3 3 1.5e-21 4.4e-19 63.5 0.0 70 140 203 275 179 275 0.87 # 4671 # 5498 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.517 4_9 - 353 AAA_2 PF07724.9 171 1.4e-05 19.5 0.0 1 1 1.1e-07 3.3e-05 18.3 0.0 5 83 98 177 95 184 0.74 # 10319 # 11377 # 1 # ID=4_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 3_8 - 695 DUF87 PF01935.12 229 0.00052 14.3 0.0 1 1 4e-06 0.0012 13.1 0.0 25 68 200 242 189 278 0.89 # 7692 # 9776 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_22 - 254 MetW PF07021.7 193 0.00021 15.1 0.0 1 1 2.1e-06 0.00031 14.6 0.0 13 102 100 192 90 202 0.77 # 14905 # 15666 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 1_33 - 564 MetW PF07021.7 193 0.002 12.0 0.0 1 1 2.3e-05 0.0034 11.2 0.0 18 83 424 487 410 499 0.85 # 28271 # 29962 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 2_41 - 680 AAA_22 PF13401.1 131 3.6e-05 18.4 0.2 1 2 0.00013 0.019 9.6 0.0 4 65 17 75 13 106 0.77 # 34004 # 36043 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 2_41 - 680 AAA_22 PF13401.1 131 3.6e-05 18.4 0.2 2 2 0.0014 0.2 6.2 0.0 41 108 152 232 112 246 0.62 # 34004 # 36043 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 3_8 - 695 AAA_22 PF13401.1 131 0.00049 14.7 0.1 1 2 7.6e-05 0.011 10.3 0.1 5 24 199 218 198 295 0.71 # 7692 # 9776 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 3_8 - 695 AAA_22 PF13401.1 131 0.00049 14.7 0.1 2 2 0.043 6.4 1.4 0.0 89 121 505 534 458 544 0.72 # 7692 # 9776 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_22 - 254 Methyltransf_11 PF08241.7 95 0.00063 14.7 0.0 1 1 4.7e-06 0.0014 13.6 0.0 5 86 109 191 105 198 0.82 # 14905 # 15666 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 5_18 - 476 DNA_methylase PF00145.12 335 9.6e-76 249.4 0.0 1 1 4.2e-78 1.2e-75 249.0 0.0 1 333 92 455 92 457 0.87 # 11409 # 12836 # 1 # ID=5_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_22 - 562 Trp_halogenase PF04820.9 454 0.013 8.5 3.3 1 1 8.1e-05 0.024 7.6 3.3 1 47 100 143 100 151 0.76 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 NAD_binding_7 PF13241.1 103 1.1e-05 20.0 1.2 1 2 1.9e-05 0.0055 11.4 0.2 9 38 100 129 96 164 0.90 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 NAD_binding_7 PF13241.1 103 1.1e-05 20.0 1.2 2 2 0.00049 0.14 6.9 0.1 8 45 271 314 264 382 0.66 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 417 N6_N4_Mtase PF01555.13 231 6e-22 72.6 0.0 1 1 3.1e-24 9.1e-22 72.1 0.0 1 227 128 389 128 393 0.81 # 2927 # 4177 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_56 - 418 ArsA_ATPase PF02374.10 305 1.7e-09 31.5 0.6 1 2 0.0088 2.6 1.4 0.0 214 274 14 76 6 85 0.80 # 52814 # 54067 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 1_56 - 418 ArsA_ATPase PF02374.10 305 1.7e-09 31.5 0.6 2 2 2.4e-10 7.2e-08 26.2 0.1 8 136 122 269 115 274 0.80 # 52814 # 54067 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 4_5 - 595 PhoH PF02562.11 205 9.3e-07 22.7 0.5 1 1 8.8e-08 2.6e-05 17.9 0.5 6 177 5 246 2 258 0.76 # 5737 # 7521 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 2_22 - 562 NAD_binding_8 PF13450.1 68 0.0002 15.8 1.2 1 1 6.9e-07 0.0002 15.8 1.2 1 35 103 136 103 155 0.91 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_56 - 418 Fer4_NifH PF00142.13 273 0.00027 14.6 0.0 1 2 2.7e-06 0.00079 13.1 0.0 7 58 122 176 116 201 0.79 # 52814 # 54067 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 1_56 - 418 Fer4_NifH PF00142.13 273 0.00027 14.6 0.0 2 2 0.1 29 -1.9 0.0 30 65 324 358 321 391 0.61 # 52814 # 54067 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 1_56 - 418 CbiA PF01656.18 195 2.2e-22 73.8 0.0 1 1 1.1e-24 3.2e-22 73.3 0.0 1 178 117 348 117 365 0.73 # 52814 # 54067 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 14_3 - 167 Ribosomal_S13 PF00416.17 107 0.0011 13.9 0.1 1 1 8e-06 0.0024 12.8 0.1 22 72 7 54 5 81 0.75 # 1097 # 1597 # -1 # ID=14_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.497 3_8 - 695 KaiC PF06745.8 227 5.6e-05 16.7 0.0 1 2 7e-06 0.0021 11.6 0.0 22 78 201 259 199 342 0.79 # 7692 # 9776 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 3_8 - 695 KaiC PF06745.8 227 5.6e-05 16.7 0.0 2 2 0.0039 1.2 2.6 0.0 48 105 357 414 348 425 0.85 # 7692 # 9776 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 5_1 - 468 B5 PF03484.10 70 0.003 11.8 0.4 1 1 4.1e-05 0.012 9.9 0.0 6 51 95 139 93 141 0.91 # 291 # 1694 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.518 3_52 - 110 Rep_fac-A_3 PF08661.6 109 0.0013 13.1 0.2 1 2 0.032 9.5 0.7 0.0 6 27 14 35 10 43 0.83 # 39276 # 39605 # -1 # ID=3_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.442 3_52 - 110 Rep_fac-A_3 PF08661.6 109 0.0013 13.1 0.2 2 2 3.2e-05 0.0094 10.3 0.3 1 45 44 88 44 104 0.76 # 39276 # 39605 # -1 # ID=3_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.442 2_22 - 562 HI0933_like PF03486.9 409 1.3e-08 28.1 5.0 1 2 4.3e-07 0.00013 15.0 2.8 2 33 100 131 99 139 0.91 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 HI0933_like PF03486.9 409 1.3e-08 28.1 5.0 2 2 1.7e-06 0.0005 13.0 0.0 83 163 286 362 281 379 0.85 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 FAD_binding_2 PF00890.19 417 2.8e-06 20.8 5.3 1 3 9.5e-09 2.8e-06 20.8 5.3 2 32 101 131 100 138 0.91 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 FAD_binding_2 PF00890.19 417 2.8e-06 20.8 5.3 2 3 0.034 10 -0.8 0.2 142 204 311 366 286 382 0.67 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 FAD_binding_2 PF00890.19 417 2.8e-06 20.8 5.3 3 3 0.0019 0.55 3.4 0.1 373 402 374 405 368 419 0.86 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_9 - 353 AAA PF00004.24 132 0.00064 14.4 0.0 1 1 4.7e-06 0.0014 13.3 0.0 1 74 99 178 99 237 0.73 # 10319 # 11377 # 1 # ID=4_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 4_5 - 595 UvrD_C PF13361.1 351 4.7e-42 139.1 0.0 1 1 5.9e-44 8.7e-42 138.2 0.0 2 348 254 564 253 567 0.86 # 5737 # 7521 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 2_41 - 680 UvrD_C PF13361.1 351 8.2e-23 75.8 0.0 1 2 0.0018 0.27 5.0 0.0 74 118 332 377 289 388 0.79 # 34004 # 36043 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 2_41 - 680 UvrD_C PF13361.1 351 8.2e-23 75.8 0.0 2 2 2e-22 2.9e-20 67.4 0.0 290 347 538 607 519 611 0.91 # 34004 # 36043 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 2_22 - 562 Thi4 PF01946.12 230 0.0008 13.0 0.4 1 1 6.3e-06 0.0019 11.7 0.4 19 70 100 150 95 158 0.88 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_9 - 353 Sigma54_activat PF00158.21 168 0.00037 14.4 0.0 1 1 7.9e-06 0.0023 11.8 0.0 20 120 94 189 78 223 0.65 # 10319 # 11377 # 1 # ID=4_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 2_22 - 562 Pyr_redox_3 PF13738.1 203 4.3e-18 60.5 0.1 1 3 1.5e-06 0.00044 14.8 0.0 164 199 95 130 48 134 0.85 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 Pyr_redox_3 PF13738.1 203 4.3e-18 60.5 0.1 2 3 5.8e-09 1.7e-06 22.6 0.0 115 201 219 304 174 306 0.81 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 Pyr_redox_3 PF13738.1 203 4.3e-18 60.5 0.1 3 3 5.6e-08 1.7e-05 19.4 0.0 89 147 317 372 309 431 0.82 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_22 - 254 N6_Mtase PF02384.11 311 1.2e-08 28.7 0.0 1 2 1.3e-05 0.0013 12.2 0.0 55 136 109 176 79 179 0.58 # 14905 # 15666 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 1_22 - 254 N6_Mtase PF02384.11 311 1.2e-08 28.7 0.0 2 2 6.1e-06 0.00061 13.3 0.0 161 200 179 219 176 247 0.76 # 14905 # 15666 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 1_33 - 564 N6_Mtase PF02384.11 311 7.4e-06 19.6 0.0 1 1 1.3e-07 1.3e-05 18.8 0.0 89 138 445 492 427 504 0.87 # 28271 # 29962 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 3_47 - 164 N6_Mtase PF02384.11 311 0.0025 11.3 0.0 1 1 3.2e-05 0.0031 11.0 0.0 37 78 14 59 5 84 0.72 # 36168 # 36659 # -1 # ID=3_47;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.500 3_8 - 695 TraG-D_C PF12696.2 128 2.1e-11 38.2 0.0 1 1 1.5e-13 4.3e-11 37.2 0.0 2 112 505 617 504 631 0.82 # 7692 # 9776 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_56 - 418 AAA_31 PF13614.1 157 5.8e-08 27.2 0.4 1 2 9.4e-08 2.8e-05 18.5 0.0 9 128 123 270 121 292 0.83 # 52814 # 54067 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 1_56 - 418 AAA_31 PF13614.1 157 5.8e-08 27.2 0.4 2 2 0.00088 0.26 5.6 0.1 14 89 299 381 284 410 0.72 # 52814 # 54067 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 1_22 - 254 Methyltransf_26 PF13659.1 117 2.9e-13 44.4 0.1 1 1 8.2e-15 1.2e-12 42.3 0.0 1 115 101 201 101 207 0.81 # 14905 # 15666 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 1_33 - 564 Methyltransf_26 PF13659.1 117 1.3e-08 29.3 0.0 1 1 1.9e-10 2.8e-08 28.3 0.0 3 116 422 516 416 517 0.80 # 28271 # 29962 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 2_22 - 562 XdhC_C PF13478.1 136 0.0025 12.6 1.0 1 2 0.08 24 -0.3 0.1 1 29 101 129 101 163 0.86 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 XdhC_C PF13478.1 136 0.0025 12.6 1.0 2 2 6.9e-05 0.02 9.6 0.1 1 66 273 351 273 371 0.64 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_5 - 595 AAA_30 PF13604.1 196 0.0001 16.3 0.3 1 2 2.9e-05 0.0043 11.1 0.0 4 66 6 66 4 90 0.72 # 5737 # 7521 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 4_5 - 595 AAA_30 PF13604.1 196 0.0001 16.3 0.3 2 2 0.018 2.6 2.0 0.0 91 132 187 227 162 261 0.83 # 5737 # 7521 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 2_41 - 680 AAA_30 PF13604.1 196 0.00089 13.3 0.0 1 2 0.00018 0.026 8.5 0.0 7 42 10 42 4 80 0.71 # 34004 # 36043 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 2_41 - 680 AAA_30 PF13604.1 196 0.00089 13.3 0.0 2 2 0.014 2 2.3 0.0 97 133 213 248 196 300 0.84 # 34004 # 36043 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 3_8 - 695 FtsK_SpoIIIE PF01580.13 205 3.6e-07 24.2 0.0 1 2 5.4e-07 0.00016 15.6 0.0 22 80 181 236 170 243 0.86 # 7692 # 9776 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 3_8 - 695 FtsK_SpoIIIE PF01580.13 205 3.6e-07 24.2 0.0 2 2 0.00047 0.14 6.0 0.0 169 204 510 542 500 543 0.81 # 7692 # 9776 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_22 - 254 MTS PF05175.9 170 2.2e-08 28.1 0.0 1 1 2.3e-10 3.5e-08 27.4 0.0 35 144 104 205 89 224 0.72 # 14905 # 15666 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 1_33 - 564 MTS PF05175.9 170 9.3e-07 22.8 0.0 1 1 1.1e-08 1.6e-06 22.0 0.0 94 156 475 532 447 543 0.80 # 28271 # 29962 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 12_1 - 108 AAA_35 PF14516.1 331 0.00029 13.9 0.8 1 2 1.8e-06 0.00053 13.1 0.6 184 226 47 91 40 97 0.75 # 1 # 324 # 1 # ID=12_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 12_1 - 108 AAA_35 PF14516.1 331 0.00029 13.9 0.8 2 2 0.0017 0.51 3.3 0.1 180 214 72 106 69 107 0.91 # 1 # 324 # 1 # ID=12_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 2_22 - 562 K_oxygenase PF13434.1 341 9.9e-06 19.0 0.2 1 3 0.0041 1.2 2.3 0.2 187 223 95 129 86 132 0.74 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 K_oxygenase PF13434.1 341 9.9e-06 19.0 0.2 2 3 2.9e-06 0.00085 12.7 0.0 130 231 217 309 200 339 0.79 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 K_oxygenase PF13434.1 341 9.9e-06 19.0 0.2 3 3 0.022 6.4 -0.0 0.0 139 160 345 366 314 376 0.63 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_33 - 564 Cons_hypoth95 PF03602.10 183 0.0015 12.3 0.0 1 1 9.7e-06 0.0029 11.5 0.0 105 138 471 502 451 516 0.71 # 28271 # 29962 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 2_41 - 680 AAA_19 PF13245.1 76 1.2e-10 35.4 0.1 1 1 2.7e-12 2.7e-10 34.4 0.1 14 75 21 86 11 87 0.87 # 34004 # 36043 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 4_5 - 595 AAA_19 PF13245.1 76 4.4e-09 30.5 0.0 1 1 6.1e-10 6e-08 26.8 0.0 3 75 12 86 10 87 0.84 # 5737 # 7521 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 1_56 - 418 AAA_19 PF13245.1 76 0.0011 13.2 0.0 1 1 2.7e-05 0.0027 11.9 0.0 20 48 125 152 123 182 0.82 # 52814 # 54067 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 1_53 - 894 AAA_10 PF12846.2 304 2.5e-65 215.3 0.0 1 1 3.7e-67 3.7e-65 214.7 0.0 1 303 456 812 456 813 0.93 # 46294 # 48975 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.423 3_8 - 695 AAA_10 PF12846.2 304 9.7e-17 55.7 0.0 1 1 2e-18 2e-16 54.7 0.0 2 296 199 578 198 585 0.73 # 7692 # 9776 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 4_5 - 595 AAA_10 PF12846.2 304 0.00084 13.2 0.3 1 1 3.5e-05 0.0035 11.2 0.0 1 25 16 40 16 49 0.80 # 5737 # 7521 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 4_5 - 595 AAA_12 PF13087.1 200 2e-08 28.3 0.1 1 3 0.00079 0.23 5.2 0.0 98 153 33 84 13 94 0.78 # 5737 # 7521 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 4_5 - 595 AAA_12 PF13087.1 200 2e-08 28.3 0.1 2 3 0.0026 0.77 3.5 0.0 5 52 240 287 237 400 0.74 # 5737 # 7521 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 4_5 - 595 AAA_12 PF13087.1 200 2e-08 28.3 0.1 3 3 5.1e-07 0.00015 15.6 0.0 136 196 497 563 409 567 0.81 # 5737 # 7521 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 2_22 - 562 FAD_oxidored PF12831.2 428 1.8e-06 21.7 3.8 1 2 5.9e-09 1.8e-06 21.7 3.8 1 41 100 139 100 159 0.83 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 FAD_oxidored PF12831.2 428 1.8e-06 21.7 3.8 2 2 0.01 3 1.2 0.0 84 120 305 341 261 364 0.71 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 DAO PF01266.19 358 2e-11 37.8 7.5 1 2 1.9e-08 5.6e-06 19.9 1.5 2 35 101 134 100 161 0.85 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 DAO PF01266.19 358 2e-11 37.8 7.5 2 2 7.7e-09 2.3e-06 21.1 0.5 151 239 314 400 274 529 0.80 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_22 - 254 Methyltransf_31 PF13847.1 152 0.00041 14.4 0.0 1 1 2.6e-06 0.00077 13.5 0.0 7 106 104 197 99 240 0.78 # 14905 # 15666 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 2_41 - 680 Viral_helicase1 PF01443.13 234 5.4e-11 36.8 0.0 1 3 7.7e-07 0.00011 16.2 0.0 2 60 21 78 20 86 0.84 # 34004 # 36043 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 2_41 - 680 Viral_helicase1 PF01443.13 234 5.4e-11 36.8 0.0 2 3 0.00023 0.034 8.1 0.0 62 118 209 263 186 343 0.73 # 34004 # 36043 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 2_41 - 680 Viral_helicase1 PF01443.13 234 5.4e-11 36.8 0.0 3 3 0.0011 0.16 5.9 0.0 213 232 572 606 528 608 0.62 # 34004 # 36043 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 4_5 - 595 Viral_helicase1 PF01443.13 234 8.2e-08 26.4 0.1 1 3 0.0057 0.84 3.5 0.0 2 21 20 39 19 91 0.63 # 5737 # 7521 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 4_5 - 595 Viral_helicase1 PF01443.13 234 8.2e-08 26.4 0.1 2 3 0.0086 1.3 2.9 0.0 40 135 167 261 132 297 0.74 # 5737 # 7521 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 4_5 - 595 Viral_helicase1 PF01443.13 234 8.2e-08 26.4 0.1 3 3 7e-07 0.0001 16.3 0.0 183 232 494 562 401 563 0.72 # 5737 # 7521 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 5_23 - 273 ThiS-like PF14453.1 57 0.0023 12.2 0.0 1 1 1.7e-05 0.0049 11.2 0.0 25 54 165 194 146 196 0.94 # 15888 # 16706 # -1 # ID=5_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 4_5 - 595 DEAD PF00270.24 169 8.8e-05 16.5 0.7 1 1 3.8e-06 0.0011 12.9 0.7 4 105 8 107 5 222 0.77 # 5737 # 7521 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 2_22 - 562 Pyr_redox PF00070.22 80 2.8e-19 63.8 5.4 1 2 1.2e-06 0.00037 15.4 1.5 2 31 101 130 100 132 0.95 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 Pyr_redox PF00070.22 80 2.8e-19 63.8 5.4 2 2 3.2e-17 9.4e-15 49.3 0.1 1 72 272 342 272 351 0.91 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_8 - 695 DUF853 PF05872.7 504 8.4e-05 15.4 0.0 1 1 6.2e-07 0.00018 14.3 0.0 10 60 187 237 179 245 0.87 # 7692 # 9776 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_33 - 564 Methyltransf_27 PF13708.1 194 1.1e-56 185.9 0.1 1 1 1.5e-58 2.2e-56 184.9 0.0 2 194 93 296 92 296 0.95 # 28271 # 29962 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 5_23 - 273 Methyltransf_27 PF13708.1 194 1.5e-46 152.8 0.0 1 1 1.2e-48 1.8e-46 152.6 0.0 3 194 72 266 70 266 0.95 # 15888 # 16706 # -1 # ID=5_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 3_8 - 695 TrwB_AAD_bind PF10412.4 386 1.4e-16 54.5 0.0 1 2 6.5e-07 0.00019 14.5 0.0 16 52 199 235 191 341 0.88 # 7692 # 9776 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 3_8 - 695 TrwB_AAD_bind PF10412.4 386 1.4e-16 54.5 0.0 2 2 8.1e-14 2.4e-11 37.2 0.0 164 345 412 604 391 646 0.77 # 7692 # 9776 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_22 - 254 N6-adenineMlase PF10237.4 162 2.1e-05 18.6 0.0 1 1 1.1e-07 3.4e-05 18.0 0.0 84 133 163 214 133 225 0.77 # 14905 # 15666 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 2_41 - 680 AAA_11 PF13086.1 236 0.0007 13.6 0.1 1 1 1.1e-05 0.0031 11.5 0.0 17 72 17 67 4 146 0.73 # 34004 # 36043 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 1_7 - 203 TIGR00755 TIGR00755 256 7.4e-05 16.2 0.1 1 1 4.8e-07 0.00014 15.3 0.1 32 86 83 139 61 150 0.86 # 4348 # 4956 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.499 1_37 - 278 MethyltransfD12 PF02086.10 260 2.1e-47 156.2 0.0 1 1 8e-50 2.4e-47 156.0 0.0 1 256 13 255 13 259 0.91 # 32947 # 33780 # 1 # ID=1_37;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.446 2_41 - 680 Herpes_ori_bp PF02399.10 824 0.0011 11.4 0.0 1 1 7.3e-06 0.0022 10.4 0.0 52 109 20 83 9 102 0.80 # 34004 # 36043 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 2_22 - 562 AlaDh_PNT_C PF01262.16 168 2.5e-06 21.6 2.3 1 2 3.9e-06 0.0012 12.9 0.3 16 50 94 128 80 131 0.87 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_22 - 562 AlaDh_PNT_C PF01262.16 168 2.5e-06 21.6 2.3 2 2 0.00012 0.034 8.1 0.1 19 60 269 310 260 341 0.84 # 17098 # 18783 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_41 - 680 UvrD-helicase PF00580.16 315 8.8e-39 128.0 0.2 1 1 7e-40 1e-37 124.5 0.2 2 307 6 260 5 266 0.90 # 34004 # 36043 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 4_5 - 595 UvrD-helicase PF00580.16 315 1.3e-30 101.2 2.8 1 3 1.1e-16 1.6e-14 48.4 0.0 2 105 5 91 4 95 0.92 # 5737 # 7521 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 4_5 - 595 UvrD-helicase PF00580.16 315 1.3e-30 101.2 2.8 2 3 1.1e-17 1.6e-15 51.6 0.3 208 314 145 248 107 249 0.86 # 5737 # 7521 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 4_5 - 595 UvrD-helicase PF00580.16 315 1.3e-30 101.2 2.8 3 3 0.072 11 -0.4 0.0 91 128 412 455 373 525 0.73 # 5737 # 7521 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 4_5 - 595 AAA_25 PF13481.1 194 0.001 12.9 0.0 1 1 1.8e-05 0.0052 10.6 0.0 17 63 3 46 1 62 0.78 # 5737 # 7521 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 1_7 - 203 Spermine_synth PF01564.12 246 0.001 12.4 0.0 1 1 5e-06 0.0015 11.9 0.0 79 143 83 141 65 156 0.84 # 4348 # 4956 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.499 4_9 - 353 AAA_5 PF07728.9 139 7.2e-34 110.9 0.0 1 1 3.9e-36 1.2e-33 110.3 0.0 1 139 98 238 98 238 0.96 # 10319 # 11377 # 1 # ID=4_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/82a5258c-0dbb-4006-8efa-b16173c8d01c # Target file: checkm_output/bins/pm237/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm237/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/82a5258c-0dbb-4006-8efa-b16173c8d01c checkm_output/bins/pm237/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:03:53 2020 # [ok]