# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 146 AAA_23 PF13476.1 202 0.00018 11.2 4.5 1 1 2.5e-05 0.0002 11.0 4.5 128 202 45 131 13 135 0.55 # 3577 # 4014 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_4 - 523 DUF3584 PF12128.3 1201 9.3e-05 9.1 50.2 1 2 6.6e-06 5.3e-05 9.9 37.1 339 533 57 253 44 266 0.83 # 1749 # 3317 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_4 - 523 DUF3584 PF12128.3 1201 9.3e-05 9.1 50.2 2 2 0.0002 0.0016 5.0 5.2 642 725 296 376 272 450 0.43 # 1749 # 3317 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/09cbd761-20a0-484a-a9c6-dcdc0af10681 # Target file: checkm_output/bins/pm220/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm220/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/09cbd761-20a0-484a-a9c6-dcdc0af10681 checkm_output/bins/pm220/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:03:40 2020 # [ok]