# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_15 - 207 Seryl_tRNA_N PF02403.17 108 0.0002 14.2 7.2 1 2 0.019 1.7 1.5 0.1 29 49 102 122 87 125 0.63 # 16439 # 17059 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.626 1_15 - 207 Seryl_tRNA_N PF02403.17 108 0.0002 14.2 7.2 2 2 3.8e-06 0.00035 13.4 5.5 23 101 120 195 107 197 0.88 # 16439 # 17059 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.626 1_19 - 402 MipZ PF09140.6 261 1.6e-06 20.1 2.2 1 3 0.066 6 -1.4 0.1 149 200 14 65 9 72 0.74 # 20201 # 21406 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_19 - 402 MipZ PF09140.6 261 1.6e-06 20.1 2.2 2 3 3.5e-05 0.0032 9.3 0.1 1 49 110 163 110 187 0.76 # 20201 # 21406 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_19 - 402 MipZ PF09140.6 261 1.6e-06 20.1 2.2 3 3 3.4e-05 0.0031 9.4 0.0 89 135 236 282 227 287 0.90 # 20201 # 21406 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_27 - 179 SSB PF00436.20 104 1.9e-41 132.9 0.5 1 1 2.8e-43 2.6e-41 132.6 0.5 1 100 6 109 6 113 0.95 # 27234 # 27770 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 1_5 - 1093 UvrD_C_2 PF13538.1 104 2e-09 30.4 0.1 1 1 7.2e-11 6.6e-09 28.7 0.1 2 103 671 777 670 778 0.76 # 4792 # 8070 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.586 1_57 - 864 DUF87 PF01935.12 229 0.0001 14.9 0.5 1 1 2.8e-06 0.00025 13.6 0.0 26 69 477 523 474 666 0.72 # 48231 # 50822 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.530 1_21 - 150 N6_N4_Mtase PF01555.13 231 1.4e-25 82.9 0.0 1 2 0.00012 0.011 7.9 0.0 74 115 11 48 3 64 0.80 # 23552 # 24001 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_21 - 150 N6_N4_Mtase PF01555.13 231 1.4e-25 82.9 0.0 2 2 8.7e-25 7.9e-23 73.9 0.0 169 227 64 122 49 127 0.88 # 23552 # 24001 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_2 - 426 AAA_17 PF13207.1 121 0.00046 13.8 0.0 1 2 6.9e-05 0.0062 10.1 0.0 3 60 189 240 187 269 0.60 # 572 # 1849 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_2 - 426 AAA_17 PF13207.1 121 0.00046 13.8 0.0 2 2 0.048 4.4 1.0 0.0 36 95 287 350 274 380 0.66 # 572 # 1849 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_2 - 426 MobB PF03205.9 140 0.00066 12.2 0.0 1 1 1.5e-05 0.0013 11.2 0.0 5 34 190 219 187 224 0.87 # 572 # 1849 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_19 - 402 ArsA_ATPase PF02374.10 305 0.00028 12.7 0.3 1 1 8.1e-06 0.00074 11.3 0.0 4 136 113 255 110 257 0.70 # 20201 # 21406 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_19 - 402 Methyltransf_24 PF13578.1 106 0.00042 13.9 0.0 1 1 2.8e-05 0.0025 11.4 0.0 4 79 120 255 117 271 0.62 # 20201 # 21406 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_19 - 402 VirC1 PF07015.6 231 0.00048 12.0 0.0 1 2 0.015 1.4 0.7 0.0 4 26 112 134 110 141 0.83 # 20201 # 21406 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_19 - 402 VirC1 PF07015.6 231 0.00048 12.0 0.0 2 2 5.7e-05 0.0052 8.6 0.0 83 141 245 304 233 379 0.72 # 20201 # 21406 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_19 - 402 Fer4_NifH PF00142.13 273 2e-05 16.7 0.0 1 1 4.6e-07 4.2e-05 15.6 0.0 7 70 117 185 112 194 0.79 # 20201 # 21406 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_2 - 426 Arch_ATPase PF01637.13 234 6.9e-05 15.4 0.0 1 1 1.2e-06 0.00011 14.7 0.0 27 82 192 241 182 322 0.85 # 572 # 1849 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_2 - 426 AAA_16 PF13191.1 185 5.8e-05 15.9 0.0 1 1 2.5e-06 0.00011 15.0 0.0 22 56 183 217 179 320 0.79 # 572 # 1849 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_57 - 864 AAA_16 PF13191.1 185 0.00016 14.5 0.1 1 1 1.4e-05 0.00066 12.5 0.0 26 56 476 507 461 588 0.88 # 48231 # 50822 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.530 1_19 - 402 CbiA PF01656.18 195 3.4e-24 78.1 0.0 1 1 8.2e-26 7.4e-24 77.0 0.0 1 158 112 319 112 350 0.72 # 20201 # 21406 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_3 - 314 TraG-D_C PF12696.2 128 1.4e-19 63.0 0.0 1 1 2.9e-21 2.7e-19 62.1 0.0 1 126 8 129 8 131 0.83 # 1809 # 2750 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_19 - 402 AAA_31 PF13614.1 157 3.3e-08 26.4 0.1 1 2 3.8e-06 0.00035 13.3 0.0 2 91 111 205 110 220 0.84 # 20201 # 21406 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_19 - 402 AAA_31 PF13614.1 157 3.3e-08 26.4 0.1 2 2 3.7e-05 0.0034 10.1 0.0 109 148 237 275 221 280 0.86 # 20201 # 21406 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_21 - 150 Methyltransf_26 PF13659.1 117 4.7e-07 22.7 0.0 1 1 7.5e-09 6.8e-07 22.1 0.0 4 44 90 136 87 146 0.78 # 23552 # 24001 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_5 - 1093 AAA_30 PF13604.1 196 7.5e-43 139.1 4.5 1 2 1.3e-43 1.2e-41 135.2 1.6 2 186 295 482 294 486 0.93 # 4792 # 8070 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.586 1_5 - 1093 AAA_30 PF13604.1 196 7.5e-43 139.1 4.5 2 2 0.0055 0.5 2.6 0.1 19 82 781 852 771 866 0.59 # 4792 # 8070 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.586 1_21 - 150 Cons_hypoth95 PF03602.10 183 0.0011 11.2 0.0 1 1 1.4e-05 0.0013 11.0 0.0 40 61 84 105 63 132 0.84 # 23552 # 24001 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_5 - 1093 AAA_19 PF13245.1 76 6.7e-07 21.8 1.8 1 1 4.5e-08 4.1e-06 19.3 0.2 9 75 310 372 301 373 0.76 # 4792 # 8070 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.586 1_57 - 864 AAA_10 PF12846.2 304 2.7e-46 151.1 0.0 1 1 4e-47 1.2e-45 148.9 0.0 1 291 474 760 474 767 0.92 # 48231 # 50822 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.530 1_3 - 314 AAA_10 PF12846.2 304 2.3e-08 26.5 0.0 1 1 1.2e-09 3.6e-08 25.9 0.0 216 299 3 86 1 91 0.90 # 1809 # 2750 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_2 - 426 AAA_10 PF12846.2 304 2e-07 23.5 0.0 1 1 9.2e-09 2.8e-07 23.0 0.0 3 43 187 227 186 347 0.93 # 572 # 1849 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_2 - 426 TrwB_AAD_bind PF10412.4 386 2e-88 289.3 0.0 1 1 8.5e-90 2.6e-88 288.9 0.0 2 237 172 413 171 419 0.98 # 572 # 1849 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_3 - 314 TrwB_AAD_bind PF10412.4 386 6.7e-54 175.7 0.0 1 1 2.7e-55 8.2e-54 175.4 0.0 237 386 1 150 1 150 0.99 # 1809 # 2750 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_57 - 864 TrwB_AAD_bind PF10412.4 386 3.2e-05 15.4 0.0 1 1 2e-06 6.1e-05 14.5 0.0 16 71 475 536 470 547 0.79 # 48231 # 50822 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.530 1_5 - 1093 AAA_11 PF13086.1 236 0.0012 11.1 0.0 1 1 1.4e-05 0.0012 11.1 0.0 2 69 295 359 294 378 0.84 # 4792 # 8070 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.586 1_3 - 314 T4SS-DNA_transf PF02534.9 469 3.3e-09 28.5 0.0 1 1 4.2e-11 3.8e-09 28.3 0.0 301 390 5 93 1 167 0.84 # 1809 # 2750 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_2 - 426 GTP_EFTU PF00009.22 188 0.00014 14.1 0.0 1 2 0.00021 0.019 7.2 0.0 2 29 184 211 183 234 0.88 # 572 # 1849 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_2 - 426 GTP_EFTU PF00009.22 188 0.00014 14.1 0.0 2 2 0.0012 0.11 4.7 0.0 51 85 335 367 311 375 0.89 # 572 # 1849 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4137ab91-ba1d-4fc4-a493-f29dbd177dc7 # Target file: checkm_output/bins/pm212/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm212/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4137ab91-ba1d-4fc4-a493-f29dbd177dc7 checkm_output/bins/pm212/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:03:38 2020 # [ok]