# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_2 - 208 MipZ PF09140.6 261 1.2e-13 42.4 1.9 1 3 6e-11 1.3e-09 29.2 0.0 2 47 3 47 2 56 0.88 # 729 # 1352 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 4_2 - 208 MipZ PF09140.6 261 1.2e-13 42.4 1.9 2 3 1.9e-05 0.00042 11.2 0.1 90 141 68 118 48 130 0.79 # 729 # 1352 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 4_2 - 208 MipZ PF09140.6 261 1.2e-13 42.4 1.9 3 3 0.044 0.98 0.1 0.0 184 235 137 189 130 200 0.75 # 729 # 1352 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 3_2 - 291 MipZ PF09140.6 261 9.3e-10 29.7 0.0 1 2 9.6e-07 2.1e-05 15.4 0.0 2 39 13 50 12 63 0.92 # 808 # 1680 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.404 3_2 - 291 MipZ PF09140.6 261 9.3e-10 29.7 0.0 2 2 9e-06 0.0002 12.2 0.0 74 127 111 164 93 168 0.82 # 808 # 1680 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.404 1_6 - 115 SSB PF00436.20 104 6.2e-07 21.1 0.0 1 1 1.7e-08 7.5e-07 20.8 0.0 2 103 2 94 1 95 0.88 # 6397 # 6741 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.423 5_3 - 250 Methyltransf_18 PF12847.2 112 8.1e-05 15.0 0.0 1 1 3.7e-06 0.00016 14.0 0.0 11 55 132 175 130 231 0.88 # 1163 # 1912 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 4_2 - 208 DUF1611 PF07755.6 301 0.00011 12.6 0.0 1 1 3.9e-06 0.00017 12.0 0.0 124 201 13 91 11 108 0.86 # 729 # 1352 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 4_2 - 208 ATP_bind_1 PF03029.12 238 0.00012 13.4 0.1 1 1 4.9e-06 0.00022 12.6 0.1 6 44 12 50 10 74 0.84 # 729 # 1352 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 4_2 - 208 MobB PF03205.9 140 3.8e-07 21.7 0.3 1 1 4.3e-08 1.9e-06 19.4 0.3 2 108 3 92 2 103 0.70 # 729 # 1352 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 4_2 - 208 ArsA_ATPase PF02374.10 305 2.5e-08 25.0 0.4 1 1 2.2e-09 4.9e-08 24.0 0.4 5 45 6 46 1 82 0.89 # 729 # 1352 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 3_2 - 291 ArsA_ATPase PF02374.10 305 1.1e-05 16.2 0.1 1 2 5.2e-05 0.0011 9.7 0.0 8 40 19 51 12 66 0.86 # 808 # 1680 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.404 3_2 - 291 ArsA_ATPase PF02374.10 305 1.1e-05 16.2 0.1 2 2 0.002 0.044 4.5 0.0 124 142 133 151 120 234 0.61 # 808 # 1680 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.404 4_2 - 208 VirC1 PF07015.6 231 3.3e-15 47.5 0.1 1 1 1.6e-16 7.1e-15 46.4 0.1 1 130 1 122 1 173 0.85 # 729 # 1352 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 4_2 - 208 Fer4_NifH PF00142.13 273 1.7e-07 22.4 0.0 1 1 5.6e-09 2.5e-07 21.8 0.0 6 64 8 66 3 91 0.87 # 729 # 1352 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 4_2 - 208 CbiA PF01656.18 195 2.1e-30 97.3 0.4 1 1 1.7e-31 3.6e-30 96.5 0.4 1 172 4 153 4 173 0.77 # 729 # 1352 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 3_2 - 291 CbiA PF01656.18 195 1.1e-18 59.1 0.0 1 1 7.7e-20 1.7e-18 58.4 0.0 1 158 14 203 14 236 0.74 # 808 # 1680 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.404 5_3 - 250 Ubie_methyltran PF01209.13 233 0.00029 11.7 0.0 1 1 1e-05 0.00045 11.1 0.0 26 101 97 175 87 183 0.72 # 1163 # 1912 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 4_2 - 208 AAA_31 PF13614.1 157 3.6e-08 25.2 0.4 1 2 2.8e-07 6.2e-06 18.0 0.0 1 39 2 40 2 58 0.93 # 729 # 1352 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 4_2 - 208 AAA_31 PF13614.1 157 3.6e-08 25.2 0.4 2 2 0.0039 0.085 4.5 0.0 109 152 68 109 60 114 0.81 # 729 # 1352 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 3_2 - 291 AAA_31 PF13614.1 157 2e-06 19.5 0.1 1 2 0.00018 0.004 8.8 0.0 3 46 14 57 12 64 0.86 # 808 # 1680 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.404 3_2 - 291 AAA_31 PF13614.1 157 2e-06 19.5 0.1 2 2 0.00021 0.0047 8.6 0.1 111 149 129 166 90 173 0.76 # 808 # 1680 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.404 4_2 - 208 AAA_10 PF12846.2 304 0.00016 12.9 0.1 1 2 1e-05 0.00045 11.4 0.0 11 47 12 50 10 70 0.76 # 729 # 1352 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 4_2 - 208 AAA_10 PF12846.2 304 0.00016 12.9 0.1 2 2 0.062 2.7 -1.0 0.0 170 207 106 152 52 171 0.65 # 729 # 1352 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 11_1 - 118 DapB_N PF01113.15 124 0.022 6.5 13.5 1 2 0.00074 0.032 5.9 4.1 91 120 5 34 2 39 0.84 # 3 # 356 # -1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 11_1 - 118 DapB_N PF01113.15 124 0.022 6.5 13.5 2 2 0.00084 0.037 5.7 2.8 69 102 81 116 33 118 0.69 # 3 # 356 # -1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 4_2 - 208 ArgK PF03308.11 267 4.3e-06 17.4 0.0 1 1 1.8e-07 7.8e-06 16.5 0.0 38 70 11 43 3 48 0.90 # 729 # 1352 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/19eb814b-2f47-411a-b589-99a736cadef8 # Target file: checkm_output/bins/pm211/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm211/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/19eb814b-2f47-411a-b589-99a736cadef8 checkm_output/bins/pm211/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:03:35 2020 # [ok]