# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 95 Limkain-b1 PF11608.3 91 0.00051 12.3 0.0 1 1 8.9e-06 0.00066 12.0 0.0 41 74 9 42 5 59 0.88 # 76 # 360 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.607 1_10 - 402 MipZ PF09140.6 261 1.4e-06 20.0 0.0 1 2 0.0027 0.2 3.1 0.0 3 50 111 163 109 193 0.73 # 6056 # 7261 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_10 - 402 MipZ PF09140.6 261 1.4e-06 20.0 0.0 2 2 8.7e-07 6.4e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 6056 # 7261 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 7_3 - 506 3HCDH_N PF02737.13 180 0.01 7.9 6.6 1 2 0.0076 0.56 2.3 2.8 1 30 44 73 44 77 0.93 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 3HCDH_N PF02737.13 180 0.01 7.9 6.6 2 2 0.00026 0.019 7.1 0.1 2 36 217 251 216 303 0.75 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 GIDA PF01134.17 392 1.4e-06 19.8 5.1 1 2 1.9e-08 1.4e-06 19.8 5.1 1 53 44 98 44 234 0.86 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 GIDA PF01134.17 392 1.4e-06 19.8 5.1 2 2 0.0097 0.72 1.0 0.5 349 385 334 370 318 374 0.79 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 3_9 - 1388 UvrD_C_2 PF13538.1 104 4.6e-08 25.7 0.2 1 1 4.2e-09 3.1e-07 23.0 0.0 3 102 974 1077 970 1079 0.77 # 4380 # 8543 # -1 # ID=3_9;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.627 7_3 - 506 Pyr_redox_2 PF07992.9 201 3.8e-43 140.2 0.0 1 1 1.2e-44 8.8e-43 139.0 0.0 1 199 44 351 44 353 0.96 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 3_9 - 1388 AAA_22 PF13401.1 131 0.00012 14.7 0.0 1 2 0.0044 0.33 3.6 0.0 89 121 139 170 102 172 0.72 # 4380 # 8543 # -1 # ID=3_9;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.627 3_9 - 1388 AAA_22 PF13401.1 131 0.00012 14.7 0.0 2 2 0.0003 0.022 7.4 0.0 3 28 620 645 617 700 0.79 # 4380 # 8543 # -1 # ID=3_9;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.627 2_14 - 478 DNA_methylase PF00145.12 335 1.6e-79 259.8 0.0 1 1 4.4e-81 3.3e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 13322 # 14755 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.481 7_3 - 506 Trp_halogenase PF04820.9 454 0.0028 8.7 3.3 1 1 7.1e-05 0.0052 7.8 3.3 1 47 44 87 44 95 0.76 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 NAD_binding_7 PF13241.1 103 2.3e-06 20.4 1.3 1 2 1.6e-05 0.0012 11.6 0.2 9 38 44 73 40 109 0.90 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 NAD_binding_7 PF13241.1 103 2.3e-06 20.4 1.3 2 2 0.00042 0.031 7.1 0.1 8 45 215 262 208 326 0.66 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 NAD_binding_8 PF13450.1 68 4.4e-05 16.0 1.2 1 1 6e-07 4.4e-05 16.0 1.2 1 35 47 80 47 99 0.91 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 1_10 - 402 CbiA PF01656.18 195 1.1e-18 59.8 0.0 1 1 2.8e-20 2.1e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 6056 # 7261 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 7_3 - 506 HI0933_like PF03486.9 409 2.4e-09 28.5 5.0 1 2 3.7e-07 2.8e-05 15.2 2.8 2 33 44 75 43 83 0.91 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 HI0933_like PF03486.9 409 2.4e-09 28.5 5.0 2 2 1.5e-06 0.00011 13.2 0.0 83 163 230 306 225 323 0.85 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 FAD_binding_2 PF00890.19 417 6.2e-07 21.0 5.3 1 3 8.4e-09 6.2e-07 21.0 5.3 2 32 45 75 44 82 0.91 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 FAD_binding_2 PF00890.19 417 6.2e-07 21.0 5.3 2 3 0.053 3.9 -1.4 0.0 142 200 255 306 235 317 0.66 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 FAD_binding_2 PF00890.19 417 6.2e-07 21.0 5.3 3 3 0.0016 0.12 3.6 0.1 373 402 318 349 311 363 0.86 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 Thi4 PF01946.12 230 0.00017 13.2 0.4 1 1 5.5e-06 0.00041 11.9 0.4 19 70 44 94 39 102 0.88 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 Pyr_redox_3 PF13738.1 203 8.1e-19 60.9 0.1 1 3 1.6e-06 0.00012 14.7 0.1 165 199 40 74 17 79 0.86 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 Pyr_redox_3 PF13738.1 203 8.1e-19 60.9 0.1 2 3 4.8e-09 3.6e-07 22.9 0.0 115 201 163 248 117 250 0.80 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 Pyr_redox_3 PF13738.1 203 8.1e-19 60.9 0.1 3 3 4.7e-08 3.5e-06 19.7 0.0 89 147 261 316 253 376 0.82 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 1_10 - 402 AAA_31 PF13614.1 157 7e-05 15.3 0.0 1 1 5.5e-06 0.0004 12.8 0.0 108 147 235 273 230 279 0.86 # 6056 # 7261 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 3_9 - 1388 AAA_30 PF13604.1 196 8.3e-46 148.5 6.6 1 2 5.8e-07 4.3e-05 15.6 0.8 9 126 58 170 56 195 0.85 # 4380 # 8543 # -1 # ID=3_9;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.627 3_9 - 1388 AAA_30 PF13604.1 196 8.3e-46 148.5 6.6 2 2 1.9e-43 1.4e-41 134.7 0.6 2 186 605 792 604 796 0.94 # 4380 # 8543 # -1 # ID=3_9;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.627 7_3 - 506 K_oxygenase PF13434.1 341 1.7e-06 19.5 0.2 1 3 0.0036 0.27 2.5 0.2 187 223 39 73 31 76 0.74 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 K_oxygenase PF13434.1 341 1.7e-06 19.5 0.2 2 3 3.1e-06 0.00023 12.6 0.0 130 231 161 253 142 267 0.80 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 K_oxygenase PF13434.1 341 1.7e-06 19.5 0.2 3 3 0.018 1.4 0.2 0.0 139 160 289 310 257 320 0.63 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 3_9 - 1388 AAA_19 PF13245.1 76 1.1e-06 20.8 0.4 1 1 1.5e-08 1.1e-06 20.8 0.4 8 74 618 681 610 685 0.71 # 4380 # 8543 # -1 # ID=3_9;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.627 7_3 - 506 FAD_oxidored PF12831.2 428 3.9e-07 21.9 3.8 1 2 5.2e-09 3.9e-07 21.9 3.8 1 41 44 83 44 103 0.83 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 FAD_oxidored PF12831.2 428 3.9e-07 21.9 3.8 2 2 0.0086 0.64 1.4 0.0 84 120 249 285 205 308 0.71 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 DAO PF01266.19 358 1.2e-11 36.6 9.2 1 2 1.6e-08 1.2e-06 20.1 1.5 2 35 45 78 44 105 0.85 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 DAO PF01266.19 358 1.2e-11 36.6 9.2 2 2 1.2e-08 8.8e-07 20.5 0.7 152 205 259 311 246 402 0.74 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 Pyr_redox PF00070.22 80 5.3e-20 64.2 5.4 1 2 1.1e-06 8.1e-05 15.5 1.5 2 31 45 74 44 76 0.95 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 Pyr_redox PF00070.22 80 5.3e-20 64.2 5.4 2 2 2.7e-17 2e-15 49.5 0.1 1 72 216 286 216 295 0.91 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 3_9 - 1388 AAA_11 PF13086.1 236 1.5e-05 17.1 1.6 1 1 5.4e-07 4e-05 15.7 0.0 2 75 605 675 604 699 0.81 # 4380 # 8543 # -1 # ID=3_9;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.627 7_3 - 506 AlaDh_PNT_C PF01262.16 168 5e-07 21.9 2.3 1 2 3.4e-06 0.00025 13.1 0.3 16 50 38 72 24 75 0.87 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 7_3 - 506 AlaDh_PNT_C PF01262.16 168 5e-07 21.9 2.3 2 2 0.0001 0.0074 8.3 0.1 19 61 213 255 204 285 0.84 # 505 # 2022 # 1 # ID=7_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.654 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/26b81bc5-838c-4788-908d-2e1d38be06ff # Target file: checkm_output/bins/pm21/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm21/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/26b81bc5-838c-4788-908d-2e1d38be06ff checkm_output/bins/pm21/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:03:34 2020 # [ok]