# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 210 MipZ PF09140.6 261 1.6e-12 38.2 0.2 1 3 3.8e-09 1.1e-07 22.3 0.0 4 39 4 38 1 55 0.81 # 1263 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 210 MipZ PF09140.6 261 1.6e-12 38.2 0.2 2 3 3.5e-05 0.001 9.3 0.0 93 135 74 116 60 132 0.85 # 1263 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 210 MipZ PF09140.6 261 1.6e-12 38.2 0.2 3 3 0.002 0.058 3.5 0.0 210 236 169 195 136 207 0.78 # 1263 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_6 - 582 DUF87 PF01935.12 229 8.5e-10 29.9 0.0 1 1 5.7e-11 1.7e-09 29.0 0.0 6 63 173 228 168 409 0.75 # 3467 # 5212 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_6 - 582 AAA_22 PF13401.1 131 5.1e-05 14.6 0.1 1 2 0.00032 0.0047 8.3 0.0 3 49 188 228 184 297 0.73 # 3467 # 5212 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_6 - 582 AAA_22 PF13401.1 131 5.1e-05 14.6 0.1 2 2 0.009 0.13 3.6 0.0 71 108 373 418 303 441 0.79 # 3467 # 5212 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_19 - 913 AAA_22 PF13401.1 131 0.00017 12.9 0.0 1 2 0.00019 0.0028 9.0 0.0 6 31 534 559 529 604 0.74 # 14152 # 16890 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_19 - 913 AAA_22 PF13401.1 131 0.00017 12.9 0.0 2 2 0.057 0.83 1.0 0.0 78 125 740 789 734 795 0.77 # 14152 # 16890 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_2 - 210 SRP54 PF00448.17 196 1.2e-07 22.5 0.0 1 1 8.4e-09 2.4e-07 21.5 0.0 11 178 11 174 2 178 0.73 # 1263 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 210 ArsA_ATPase PF02374.10 305 3e-07 20.9 0.4 1 1 1.7e-08 4.8e-07 20.2 0.4 4 42 4 41 1 45 0.84 # 1263 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_11 - 342 T2SE PF00437.15 272 3.4e-50 161.5 0.0 1 1 2.7e-51 3.9e-50 161.3 0.0 7 240 18 279 12 313 0.93 # 7949 # 8974 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_6 - 582 T2SE PF00437.15 272 0.00023 11.2 0.0 1 1 2.7e-05 0.0004 10.5 0.0 132 166 193 226 161 236 0.81 # 3467 # 5212 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_19 - 913 SMC_N PF02463.14 220 0.00018 11.9 0.0 1 1 1.4e-05 0.00041 10.7 0.0 15 42 523 550 515 555 0.81 # 14152 # 16890 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_2 - 210 VirC1 PF07015.6 231 7.4e-11 32.7 0.1 1 1 3e-12 8.7e-11 32.4 0.1 6 184 5 179 1 201 0.83 # 1263 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 210 Fer4_NifH PF00142.13 273 1.7e-05 15.2 0.1 1 1 1.2e-06 3.4e-05 14.2 0.1 5 42 6 42 2 47 0.86 # 1263 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_19 - 913 AAA_16 PF13191.1 185 0.00021 12.4 0.0 1 2 0.00041 0.012 6.8 0.0 18 50 526 557 516 586 0.78 # 14152 # 16890 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_19 - 913 AAA_16 PF13191.1 185 0.00021 12.4 0.0 2 2 0.0048 0.14 3.2 0.0 128 166 678 765 589 786 0.57 # 14152 # 16890 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_19 - 913 AAA_23 PF13476.1 202 4.1e-05 15.1 0.0 1 1 4e-06 0.00012 13.6 0.0 18 41 531 554 521 693 0.77 # 14152 # 16890 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_2 - 210 CbiA PF01656.18 195 8.7e-24 75.1 0.2 1 1 5.8e-25 1.7e-23 74.2 0.2 2 191 4 175 3 183 0.77 # 1263 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_6 - 582 TraG-D_C PF12696.2 128 6.1e-09 27.0 0.0 1 1 3.8e-10 1.1e-08 26.2 0.0 2 91 399 491 398 524 0.81 # 3467 # 5212 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_2 - 210 AAA_31 PF13614.1 157 1.5e-09 29.1 0.0 1 2 1.4e-09 3.9e-08 24.5 0.1 2 40 2 39 1 44 0.92 # 1263 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 210 AAA_31 PF13614.1 157 1.5e-09 29.1 0.0 2 2 0.011 0.31 2.1 0.0 116 152 75 113 64 118 0.78 # 1263 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_6 - 582 FtsK_SpoIIIE PF01580.13 205 3.6e-06 17.7 0.0 1 2 3.1e-06 4.5e-05 14.1 0.0 27 79 176 226 166 232 0.79 # 3467 # 5212 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_6 - 582 FtsK_SpoIIIE PF01580.13 205 3.6e-06 17.7 0.0 2 2 0.032 0.46 1.0 0.0 147 203 366 435 286 437 0.68 # 3467 # 5212 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_11 - 342 FtsK_SpoIIIE PF01580.13 205 0.00026 11.6 0.0 1 1 3e-05 0.00043 10.9 0.0 41 59 163 181 146 185 0.91 # 7949 # 8974 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_19 - 913 ABC_tran PF00005.22 137 4.9e-05 14.8 0.0 1 1 8.3e-06 0.00012 13.6 0.0 13 36 534 557 524 592 0.82 # 14152 # 16890 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_11 - 342 ABC_tran PF00005.22 137 0.0001 13.8 0.0 1 1 1.2e-05 0.00017 13.1 0.0 7 35 156 184 153 222 0.89 # 7949 # 8974 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_19 - 913 AAA_10 PF12846.2 304 3.3e-37 119.6 0.0 1 1 3.5e-38 5.1e-37 119.0 0.0 2 293 533 821 532 828 0.87 # 14152 # 16890 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_6 - 582 AAA_10 PF12846.2 304 7.7e-12 36.3 0.0 1 1 9.7e-11 1.4e-09 28.9 0.0 1 297 189 477 189 481 0.68 # 3467 # 5212 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_6 - 582 TrwB_AAD_bind PF10412.4 386 9e-14 41.9 0.0 1 2 3.3e-07 9.6e-06 15.5 0.0 11 52 185 226 181 234 0.90 # 3467 # 5212 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_6 - 582 TrwB_AAD_bind PF10412.4 386 9e-14 41.9 0.0 2 2 7.7e-10 2.2e-08 24.1 0.0 186 378 343 536 310 542 0.73 # 3467 # 5212 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_6 - 582 T4SS-DNA_transf PF02534.9 469 4.4e-14 43.0 0.0 1 2 4.1e-07 1.2e-05 15.2 0.0 43 84 186 231 127 259 0.77 # 3467 # 5212 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_6 - 582 T4SS-DNA_transf PF02534.9 469 4.4e-14 43.0 0.0 2 2 2.6e-10 7.5e-09 25.7 0.0 241 402 337 498 332 534 0.81 # 3467 # 5212 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_2 - 210 Gtr1_RagA PF04670.7 232 0.0002 11.7 0.0 1 1 9.7e-06 0.00028 11.2 0.0 93 130 117 154 98 174 0.87 # 1263 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 210 AAA_24 PF13479.1 213 2.2e-05 15.3 0.1 1 1 1.3e-06 3.7e-05 14.5 0.1 7 75 5 86 2 91 0.76 # 1263 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_19 - 913 AAA_25 PF13481.1 194 0.0001 12.9 0.0 1 1 7.1e-06 0.00021 11.9 0.0 36 134 535 646 531 655 0.68 # 14152 # 16890 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_18 - 238 ABC_tran_2 PF12848.2 85 0.0038 8.3 14.5 1 2 0.00059 0.017 6.2 2.2 20 72 41 92 30 99 0.63 # 13418 # 14131 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.476 1_18 - 238 ABC_tran_2 PF12848.2 85 0.0038 8.3 14.5 2 2 0.0013 0.037 5.1 4.7 13 69 129 185 127 226 0.91 # 13418 # 14131 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.476 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/39d62bb7-a4da-4f20-b494-ecb93c1796fb # Target file: checkm_output/bins/pm2097/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2097/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/39d62bb7-a4da-4f20-b494-ecb93c1796fb checkm_output/bins/pm2097/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:03:33 2020 # [ok]