# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 191 Methyltransf_12 PF08242.7 99 5.9e-15 46.8 0.0 1 1 3e-16 8.4e-15 46.3 0.0 1 99 54 152 54 152 0.95 # 8486 # 9058 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.387 1_8 - 207 cobW PF02492.14 178 0.00013 12.5 0.1 1 2 2.8e-05 0.00077 10.0 0.0 10 38 12 41 3 48 0.86 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_8 - 207 cobW PF02492.14 178 0.00013 12.5 0.1 2 2 0.028 0.79 0.2 0.0 114 146 115 147 71 165 0.77 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_17 - 322 Saccharop_dh PF03435.13 386 2e-06 18.0 0.3 1 2 8.3e-07 2.3e-05 14.5 0.7 1 100 26 159 26 200 0.73 # 15650 # 16615 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_17 - 322 Saccharop_dh PF03435.13 386 2e-06 18.0 0.3 2 2 0.028 0.78 -0.4 0.0 261 307 256 298 223 306 0.75 # 15650 # 16615 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_8 - 207 MipZ PF09140.6 261 5.8e-14 42.8 0.8 1 2 2.3e-10 6.6e-09 26.3 0.0 2 47 3 47 2 57 0.88 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_8 - 207 MipZ PF09140.6 261 5.8e-14 42.8 0.8 2 2 5.9e-07 1.7e-05 15.1 0.2 96 141 73 118 56 146 0.84 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_5 - 191 Methyltransf_18 PF12847.2 112 9.7e-10 30.2 0.0 1 1 5.4e-11 1.5e-09 29.6 0.0 4 107 52 152 50 156 0.84 # 8486 # 9058 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.387 1_8 - 207 DUF1611 PF07755.6 301 6.9e-07 19.2 0.3 1 1 3.9e-08 1.1e-06 18.6 0.3 124 201 13 91 11 108 0.87 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_8 - 207 ATP_bind_1 PF03029.12 238 6.3e-06 16.9 0.1 1 1 3.7e-07 1e-05 16.2 0.1 6 44 12 50 10 74 0.84 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_5 - 191 Methyltransf_11 PF08241.7 95 8.2e-14 43.1 0.0 1 1 4.4e-15 1.2e-13 42.5 0.0 1 93 54 152 54 153 0.92 # 8486 # 9058 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.387 1_17 - 322 NAD_binding_7 PF13241.1 103 1.8e-05 16.1 0.0 1 1 1.5e-06 4.2e-05 15.0 0.0 5 91 21 144 19 148 0.71 # 15650 # 16615 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_8 - 207 AAA_17 PF13207.1 121 0.00019 13.4 0.0 1 1 9.4e-06 0.00026 12.9 0.0 9 80 12 86 11 171 0.69 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_8 - 207 MobB PF03205.9 140 2.7e-05 15.0 0.2 1 1 5.3e-06 0.00015 12.6 0.1 10 102 12 86 2 104 0.68 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_8 - 207 ArsA_ATPase PF02374.10 305 1.8e-07 21.5 0.2 1 1 1e-08 2.9e-07 20.9 0.1 5 45 6 46 1 84 0.91 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_17 - 322 Shikimate_DH PF01488.15 135 3.4e-05 15.1 0.2 1 1 2.4e-06 6.8e-05 14.1 0.2 7 36 18 47 12 53 0.87 # 15650 # 16615 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_14 - 361 NAD_binding_8 PF13450.1 68 0.00021 12.5 0.0 1 1 2.6e-05 0.00074 10.7 0.0 1 25 56 80 56 98 0.84 # 13597 # 14679 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.622 1_8 - 207 VirC1 PF07015.6 231 4.6e-15 46.4 0.2 1 1 2.9e-16 8e-15 45.6 0.2 1 130 1 122 1 173 0.80 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_8 - 207 Fer4_NifH PF00142.13 273 7.1e-08 23.0 0.1 1 1 5e-09 1.4e-07 22.0 0.0 8 64 10 66 3 92 0.88 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_8 - 207 CbiA PF01656.18 195 7.8e-28 88.3 1.3 1 1 6.1e-29 1.7e-27 87.2 1.3 1 143 4 124 4 170 0.75 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_5 - 191 Methyltransf_25 PF13649.1 101 1.1e-07 23.4 0.0 1 1 5.5e-09 1.5e-07 22.9 0.0 2 82 54 129 53 150 0.80 # 8486 # 9058 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.387 1_14 - 361 FAD_binding_2 PF00890.19 417 4e-06 16.9 0.2 1 1 2.4e-07 6.7e-06 16.2 0.1 4 49 56 100 55 203 0.91 # 13597 # 14679 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.622 1_15 - 66 ThiS PF02597.15 77 3e-12 38.0 0.0 1 1 1.2e-13 3.5e-12 37.8 0.0 17 77 10 65 3 65 0.90 # 14676 # 14873 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.561 1_8 - 207 AAA_31 PF13614.1 157 1.6e-08 25.7 0.2 1 2 1.2e-07 3.5e-06 18.2 0.0 1 39 2 40 2 46 0.94 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_8 - 207 AAA_31 PF13614.1 157 1.6e-08 25.7 0.2 2 2 0.0011 0.03 5.4 0.0 115 152 74 109 58 114 0.83 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_5 - 191 Methyltransf_26 PF13659.1 117 4.7e-07 21.0 0.0 1 1 2.4e-08 6.8e-07 20.5 0.0 5 74 54 119 50 155 0.86 # 8486 # 9058 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.387 1_17 - 322 2-Hacid_dh_C PF02826.14 178 0.00025 11.3 0.0 1 1 1.4e-05 0.00039 10.7 0.0 28 73 15 61 1 86 0.76 # 15650 # 16615 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_8 - 207 AAA_30 PF13604.1 196 4.3e-05 14.2 0.6 1 2 6.7e-06 0.00019 12.2 0.2 26 106 10 88 2 97 0.78 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_8 - 207 AAA_30 PF13604.1 196 4.3e-05 14.2 0.6 2 2 0.039 1.1 -0.1 0.0 33 58 145 170 143 175 0.90 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_17 - 322 ApbA PF02558.11 151 0.00029 11.4 0.1 1 1 1.6e-05 0.00045 10.8 0.1 1 51 26 79 26 118 0.76 # 15650 # 16615 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_5 - 191 MTS PF05175.9 170 6.8e-12 36.2 0.1 1 1 3.5e-13 9.7e-12 35.7 0.1 21 136 39 152 36 160 0.87 # 8486 # 9058 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.387 1_5 - 191 Methyltransf_9 PF08003.6 315 1.7e-05 14.7 0.0 1 1 6e-07 1.7e-05 14.7 0.0 95 186 30 119 10 189 0.70 # 8486 # 9058 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.387 1_8 - 207 AAA_10 PF12846.2 304 2.3e-05 15.0 0.1 1 1 1.2e-06 3.4e-05 14.5 0.1 11 46 12 49 10 92 0.85 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_5 - 191 NodS PF05401.6 201 1.3e-08 25.5 0.0 1 1 6e-10 1.7e-08 25.2 0.0 16 146 20 160 15 169 0.75 # 8486 # 9058 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.387 1_14 - 361 DAO PF01266.19 358 2.7e-31 99.8 2.2 1 1 9.3e-31 2.6e-29 93.2 2.2 4 356 56 351 53 354 0.84 # 13597 # 14679 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.622 1_17 - 322 ThiF PF00899.16 136 2.9e-40 128.4 0.0 1 1 1.7e-41 4.8e-40 127.6 0.0 2 132 23 153 22 155 0.98 # 15650 # 16615 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_5 - 191 Methyltransf_31 PF13847.1 152 5.5e-11 33.4 0.0 1 1 2.6e-12 7.4e-11 33.0 0.0 5 106 51 152 47 158 0.89 # 8486 # 9058 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.387 1_14 - 361 Pyr_redox PF00070.22 80 0.00029 12.4 0.0 1 2 0.00014 0.004 8.7 0.0 2 30 54 82 53 86 0.88 # 13597 # 14679 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.622 1_14 - 361 Pyr_redox PF00070.22 80 0.00029 12.4 0.0 2 2 0.047 1.3 0.7 0.0 40 58 185 203 180 209 0.83 # 13597 # 14679 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.622 1_8 - 207 ArgK PF03308.11 267 3.5e-05 13.7 0.0 1 1 2.7e-06 7.6e-05 12.6 0.0 39 72 12 45 5 54 0.89 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_5 - 191 Methyltransf_23 PF13489.1 161 1.3e-10 32.3 0.0 1 1 5.9e-12 1.7e-10 32.0 0.0 16 127 44 168 29 183 0.81 # 8486 # 9058 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.387 1_8 - 207 AAA_24 PF13479.1 213 0.00021 12.0 0.8 1 2 1.7e-05 0.00047 10.9 0.1 12 88 11 95 3 99 0.81 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_8 - 207 AAA_24 PF13479.1 213 0.00021 12.0 0.8 2 2 0.087 2.4 -1.3 0.0 113 137 144 168 118 172 0.74 # 10952 # 11572 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4640bd7e-9b93-4598-bdd2-21b07684a6c2 # Target file: checkm_output/bins/pm2095/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2095/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4640bd7e-9b93-4598-bdd2-21b07684a6c2 checkm_output/bins/pm2095/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:03:31 2020 # [ok]