# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_12 - 210 MipZ PF09140.6 261 6.9e-09 27.7 0.3 1 3 4.5e-06 0.00018 13.2 0.1 2 53 4 55 3 69 0.88 # 9187 # 9816 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 2_12 - 210 MipZ PF09140.6 261 6.9e-09 27.7 0.3 2 3 1.7e-05 0.00068 11.3 0.0 89 135 70 116 57 157 0.77 # 9187 # 9816 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 2_12 - 210 MipZ PF09140.6 261 6.9e-09 27.7 0.3 3 3 0.041 1.7 0.2 0.0 205 237 160 193 149 202 0.80 # 9187 # 9816 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_7 - 389 MipZ PF09140.6 261 1.4e-06 20.2 0.1 1 2 1.7e-07 6.9e-06 17.9 0.0 3 47 109 153 107 168 0.90 # 4625 # 5791 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 1_7 - 389 MipZ PF09140.6 261 1.4e-06 20.2 0.1 2 2 0.071 2.9 -0.6 0.0 88 128 224 264 198 274 0.77 # 4625 # 5791 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 1_40 - 440 DUF87 PF01935.12 229 4.9e-05 15.8 0.2 1 1 1.3e-06 0.00011 14.7 0.2 24 47 163 186 162 193 0.91 # 29811 # 31130 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.507 1_7 - 389 ArsA_ATPase PF02374.10 305 1.4e-06 20.1 0.0 1 2 1.2e-06 9.4e-05 14.1 0.0 9 40 115 147 109 154 0.90 # 4625 # 5791 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 1_7 - 389 ArsA_ATPase PF02374.10 305 1.4e-06 20.1 0.0 2 2 0.0022 0.18 3.4 0.0 125 136 233 244 223 252 0.89 # 4625 # 5791 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 1_7 - 389 VirC1 PF07015.6 231 7.8e-06 17.7 0.1 1 2 2.5e-05 0.002 9.8 0.0 4 42 109 147 107 153 0.91 # 4625 # 5791 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 1_7 - 389 VirC1 PF07015.6 231 7.8e-06 17.7 0.1 2 2 0.00053 0.044 5.4 0.0 100 139 251 290 217 321 0.72 # 4625 # 5791 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 1_40 - 440 Arch_ATPase PF01637.13 234 0.00069 11.9 0.0 1 1 1.4e-05 0.0011 11.3 0.0 30 131 172 265 150 273 0.79 # 29811 # 31130 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.507 1_7 - 389 CbiA PF01656.18 195 4.3e-33 107.0 0.0 1 1 1.4e-34 5.8e-33 106.5 0.0 1 188 109 333 109 340 0.76 # 4625 # 5791 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 2_12 - 210 CbiA PF01656.18 195 8.5e-14 44.0 0.3 1 1 4e-15 1.6e-13 43.1 0.3 1 178 5 164 5 180 0.69 # 9187 # 9816 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_7 - 389 AAA_31 PF13614.1 157 2.3e-06 20.2 0.1 1 2 1.6e-05 0.00064 12.3 0.0 2 49 108 155 107 179 0.86 # 4625 # 5791 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 1_7 - 389 AAA_31 PF13614.1 157 2.3e-06 20.2 0.1 2 2 0.0018 0.074 5.6 0.0 115 151 228 267 211 271 0.80 # 4625 # 5791 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 2_12 - 210 AAA_31 PF13614.1 157 0.00011 14.8 0.0 1 2 0.00011 0.0044 9.6 0.0 2 39 4 41 4 51 0.84 # 9187 # 9816 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 2_12 - 210 AAA_31 PF13614.1 157 0.00011 14.8 0.0 2 2 0.012 0.5 2.9 0.0 111 151 71 112 61 116 0.81 # 9187 # 9816 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_40 - 440 AAA_30 PF13604.1 196 0.00039 12.7 0.7 1 3 0.063 5.1 -0.8 0.0 47 72 61 86 53 96 0.91 # 29811 # 31130 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.507 1_40 - 440 AAA_30 PF13604.1 196 0.00039 12.7 0.7 2 3 0.00015 0.012 7.8 0.1 16 63 160 204 155 214 0.70 # 29811 # 31130 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.507 1_40 - 440 AAA_30 PF13604.1 196 0.00039 12.7 0.7 3 3 0.014 1.1 1.4 0.0 16 70 225 275 213 277 0.76 # 29811 # 31130 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.507 1_22 - 211 KH_4 PF13083.1 73 0.00026 13.3 0.0 1 2 0.027 2.2 0.7 0.0 19 42 11 33 3 35 0.76 # 16106 # 16738 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.444 1_22 - 211 KH_4 PF13083.1 73 0.00026 13.3 0.0 2 2 3.6e-05 0.003 9.9 0.0 18 45 157 186 147 187 0.83 # 16106 # 16738 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.444 1_40 - 440 ABC_tran PF00005.22 137 0.00027 13.9 0.1 1 1 8.6e-06 0.00071 12.5 0.1 6 35 157 186 155 209 0.91 # 29811 # 31130 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.507 1_40 - 440 ATP-synt_ab PF00006.20 215 1.9e-77 252.1 0.0 1 1 3.1e-79 2.6e-77 251.7 0.0 2 215 149 358 148 358 0.99 # 29811 # 31130 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.507 2_6 - 144 RA PF00788.18 93 0.00076 12.6 0.0 1 1 1.3e-05 0.0011 12.2 0.0 26 68 3 46 1 54 0.91 # 5334 # 5765 # -1 # ID=2_6;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 1_40 - 440 AAA_25 PF13481.1 194 2.9e-05 16.1 0.2 1 1 8.4e-07 6.9e-05 14.9 0.0 24 157 151 267 135 285 0.69 # 29811 # 31130 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.507 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4aa54605-ae34-4327-90dc-220ca057379d # Target file: checkm_output/bins/pm2076/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2076/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4aa54605-ae34-4327-90dc-220ca057379d checkm_output/bins/pm2076/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:03:23 2020 # [ok]