# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 269 MipZ PF09140.6 261 3.7e-10 30.0 0.1 1 1 4.1e-10 9e-09 25.5 0.1 7 127 14 149 12 167 0.64 # 1889 # 2695 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_16 - 303 AAA_22 PF13401.1 131 9.1e-18 55.5 0.0 1 1 7.6e-19 1.7e-17 54.6 0.0 7 126 64 190 59 194 0.94 # 13174 # 14082 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.658 1_3 - 269 ArsA_ATPase PF02374.10 305 7.2e-06 15.9 0.0 1 2 3.3e-05 0.00072 9.3 0.0 9 38 16 45 12 57 0.90 # 1889 # 2695 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_3 - 269 ArsA_ATPase PF02374.10 305 7.2e-06 15.9 0.0 2 2 0.0013 0.029 4.1 0.0 110 135 104 129 70 135 0.71 # 1889 # 2695 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_3 - 269 VirC1 PF07015.6 231 9.4e-09 25.4 0.0 1 2 0.0042 0.092 2.5 0.0 9 41 15 47 10 59 0.88 # 1889 # 2695 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_3 - 269 VirC1 PF07015.6 231 9.4e-09 25.4 0.0 2 2 1.1e-08 2.5e-07 20.7 0.0 67 134 104 171 95 194 0.84 # 1889 # 2695 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_3 - 269 Fer4_NifH PF00142.13 273 1.7e-05 14.8 0.0 1 1 1.6e-06 3.6e-05 13.8 0.0 6 39 14 47 9 78 0.84 # 1889 # 2695 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_16 - 303 AAA_16 PF13191.1 185 3.5e-06 17.8 0.0 1 1 2.4e-06 5.4e-05 14.0 0.0 8 103 45 145 43 186 0.62 # 13174 # 14082 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.658 1_3 - 269 CbiA PF01656.18 195 1.2e-24 77.5 0.0 1 1 7.4e-26 1.6e-24 77.1 0.0 4 174 13 204 11 223 0.78 # 1889 # 2695 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_16 - 303 TniB PF05621.6 302 1.1e-213 698.1 6.2 1 1 5.4e-215 1.2e-213 697.9 6.2 1 302 1 302 1 302 1.00 # 13174 # 14082 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.658 1_3 - 269 AAA_31 PF13614.1 157 1.6e-10 31.9 0.1 1 1 4.1e-11 8.9e-10 29.5 0.1 9 155 16 157 13 159 0.83 # 1889 # 2695 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_16 - 303 AAA_32 PF13654.1 509 1.7e-05 14.3 0.0 1 2 7.3e-06 0.00016 11.1 0.0 8 81 34 112 26 124 0.86 # 13174 # 14082 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.658 1_16 - 303 AAA_32 PF13654.1 509 1.7e-05 14.3 0.0 2 2 0.0097 0.21 0.8 0.0 472 503 255 286 241 291 0.90 # 13174 # 14082 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.658 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d3aa96d5-1e8d-415e-a868-40f322337f6c # Target file: checkm_output/bins/pm207/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm207/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d3aa96d5-1e8d-415e-a868-40f322337f6c checkm_output/bins/pm207/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:03:17 2020 # [ok]