# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_36 - 229 UPF0020 PF01170.13 180 2.7e-05 17.6 0.0 1 2 0.00046 0.083 6.2 0.0 103 117 17 31 4 81 0.80 # 27331 # 28017 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_36 - 229 UPF0020 PF01170.13 180 2.7e-05 17.6 0.0 2 2 4.6e-05 0.0084 9.4 0.0 28 54 163 189 158 227 0.62 # 27331 # 28017 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_80 - 706 ABC_ATPase PF09818.4 448 0.00036 12.9 0.2 1 2 0.00092 0.17 4.1 0.0 241 265 490 515 476 522 0.90 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_80 - 706 ABC_ATPase PF09818.4 448 0.00036 12.9 0.2 2 2 0.00018 0.032 6.5 0.0 304 366 585 651 573 680 0.71 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_14 - 260 IstB_IS21 PF01695.12 178 8.3e-73 237.3 0.1 1 2 0.049 9 -0.6 0.0 64 97 25 57 24 61 0.64 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_14 - 260 IstB_IS21 PF01695.12 178 8.3e-73 237.3 0.1 2 2 9.8e-75 1.8e-72 236.2 0.1 1 178 56 235 56 235 0.98 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_44 - 309 MipZ PF09140.6 261 8e-21 68.0 0.2 1 2 4.5e-12 4.2e-10 32.9 0.0 2 53 2 52 1 60 0.89 # 31868 # 32794 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.423 1_44 - 309 MipZ PF09140.6 261 8e-21 68.0 0.2 2 2 6.2e-12 5.7e-10 32.4 0.0 87 140 65 118 58 128 0.92 # 31868 # 32794 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.423 1_62 - 215 MipZ PF09140.6 261 4.3e-08 26.2 2.3 1 2 0.0016 0.15 4.8 0.5 7 25 8 26 2 38 0.71 # 46524 # 47168 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_62 - 215 MipZ PF09140.6 261 4.3e-08 26.2 2.3 2 2 1.8e-08 1.7e-06 21.1 0.1 70 133 45 108 25 125 0.84 # 46524 # 47168 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_44 - 309 YhjQ PF06564.7 244 0.00012 15.2 0.0 1 2 2.9e-06 0.00053 13.1 0.1 4 38 3 37 1 49 0.89 # 31868 # 32794 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.423 1_44 - 309 YhjQ PF06564.7 244 0.00012 15.2 0.0 2 2 0.068 12 -1.2 0.0 109 144 70 103 55 111 0.77 # 31868 # 32794 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.423 1_28 - 178 SSB PF00436.20 104 2e-40 130.7 0.6 1 1 1.4e-42 2.6e-40 130.3 0.6 1 101 6 109 6 112 0.96 # 23069 # 23602 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.590 2_26 - 383 DUF87 PF01935.12 229 6.4e-05 16.6 0.0 1 1 1.9e-06 0.00012 15.7 0.0 28 51 162 186 161 192 0.83 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_80 - 706 DUF87 PF01935.12 229 0.00047 13.8 0.1 1 1 7.7e-06 0.00047 13.8 0.1 26 61 497 530 480 531 0.80 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_7 - 768 DUF87 PF01935.12 229 0.00097 12.7 0.1 1 1 8.8e-05 0.0053 10.3 0.0 16 40 130 153 120 166 0.81 # 4544 # 6847 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 2_26 - 383 NB-ARC PF00931.17 287 0.00098 11.7 0.0 1 1 1.1e-05 0.002 10.8 0.0 18 49 156 185 145 193 0.79 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_14 - 260 AAA_22 PF13401.1 131 2.7e-06 21.3 0.2 1 2 8.9e-05 0.0041 11.0 0.0 5 21 103 119 99 131 0.83 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_14 - 260 AAA_22 PF13401.1 131 2.7e-06 21.3 0.2 2 2 0.0015 0.067 7.1 0.0 88 103 154 181 126 203 0.66 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_26 - 383 AAA_22 PF13401.1 131 1.5e-05 18.9 0.0 1 1 6.2e-07 2.8e-05 18.0 0.0 3 44 156 194 153 233 0.76 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_11 - 503 AAA_22 PF13401.1 131 2.2e-05 18.4 0.0 1 1 9e-07 4.1e-05 17.5 0.0 4 49 229 281 225 345 0.80 # 10092 # 11600 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.547 1_80 - 706 AAA_22 PF13401.1 131 6.4e-05 16.9 0.3 1 1 9.1e-06 0.00042 14.2 0.3 7 106 497 641 491 666 0.66 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 2_9 - 432 YjeF_N PF03853.10 169 0.0019 11.6 0.0 1 1 2e-05 0.0037 10.6 0.0 7 70 289 353 284 410 0.73 # 8270 # 9565 # 1 # ID=2_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.562 1_44 - 309 SRP54 PF00448.17 196 9e-07 22.2 0.6 1 1 3.7e-08 6.7e-06 19.4 0.1 4 98 2 91 1 134 0.80 # 31868 # 32794 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.423 1_36 - 229 N6_N4_Mtase PF01555.13 231 9.6e-37 120.4 0.0 1 1 1.3e-36 2.4e-34 112.5 0.0 1 228 21 200 21 203 0.92 # 27331 # 28017 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_80 - 706 AAA_17 PF13207.1 121 1e-07 26.6 0.0 1 1 5.7e-09 2.6e-07 25.3 0.0 1 53 496 551 496 600 0.70 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_44 - 309 AAA_17 PF13207.1 121 9.6e-05 17.0 0.0 1 1 5.6e-06 0.00026 15.6 0.0 9 77 11 84 9 161 0.73 # 31868 # 32794 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.423 2_26 - 383 AAA_17 PF13207.1 121 0.00021 15.9 0.0 1 1 1.1e-05 0.0005 14.7 0.0 3 39 161 200 161 251 0.72 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_11 - 503 AAA_17 PF13207.1 121 0.00031 15.3 0.2 1 1 1.9e-05 0.00087 13.9 0.1 1 32 231 264 231 401 0.84 # 10092 # 11600 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.547 1_80 - 706 AAA_21 PF13304.1 303 2.4e-09 31.3 0.1 1 1 6.9e-09 1.3e-06 22.3 0.1 2 297 497 661 496 666 0.87 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_44 - 309 MobB PF03205.9 140 0.00018 15.0 0.0 1 1 5.8e-06 0.00053 13.5 0.0 10 41 11 40 1 46 0.79 # 31868 # 32794 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.423 1_80 - 706 MobB PF03205.9 140 0.0015 12.1 0.4 1 1 4.5e-05 0.0041 10.6 0.1 2 21 496 515 495 523 0.87 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_44 - 309 ArsA_ATPase PF02374.10 305 1.4e-07 24.5 0.7 1 2 2.2e-09 4e-07 23.1 0.1 3 48 3 48 1 69 0.85 # 31868 # 32794 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.423 1_44 - 309 ArsA_ATPase PF02374.10 305 1.4e-07 24.5 0.7 2 2 0.09 16 -1.9 0.0 121 135 69 85 47 86 0.75 # 31868 # 32794 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.423 1_14 - 260 PhoH PF02562.11 205 1.5e-07 24.5 0.2 1 1 7.1e-09 6.5e-07 22.5 0.0 11 48 94 131 83 159 0.83 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_26 - 383 PhoH PF02562.11 205 0.00023 14.2 0.0 1 1 4.6e-06 0.00042 13.3 0.0 15 60 153 198 141 230 0.86 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_14 - 260 AFG1_ATPase PF03969.11 362 0.00013 14.6 0.2 1 1 2.8e-06 0.00051 12.6 0.2 63 216 103 254 43 259 0.72 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_11 - 503 T2SE PF00437.15 272 1.7e-37 122.5 0.0 1 1 2.9e-39 2.7e-37 121.9 0.0 66 269 161 378 97 380 0.87 # 10092 # 11600 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.547 2_26 - 383 T2SE PF00437.15 272 6.1e-35 114.1 0.0 1 1 1e-36 9.1e-35 113.6 0.0 109 261 142 292 23 309 0.78 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_80 - 706 SMC_N PF02463.14 220 9.3e-09 28.5 1.5 1 2 0.0011 0.2 4.6 0.3 26 42 496 512 484 525 0.83 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_80 - 706 SMC_N PF02463.14 220 9.3e-09 28.5 1.5 2 2 3.1e-09 5.6e-07 22.7 0.0 136 210 604 674 515 681 0.74 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_44 - 309 VirC1 PF07015.6 231 4e-08 26.3 0.0 1 1 9e-10 8.2e-08 25.3 0.0 3 130 2 123 1 181 0.72 # 31868 # 32794 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.423 1_62 - 215 VirC1 PF07015.6 231 0.00074 12.4 0.0 1 2 0.0015 0.13 5.0 0.0 3 29 3 29 1 36 0.81 # 46524 # 47168 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_62 - 215 VirC1 PF07015.6 231 0.00074 12.4 0.0 2 2 0.001 0.095 5.5 0.0 87 190 77 181 59 194 0.70 # 46524 # 47168 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_44 - 309 Fer4_NifH PF00142.13 273 0.00029 13.8 0.0 1 1 4.1e-06 0.00074 12.5 0.0 8 38 9 39 2 46 0.89 # 31868 # 32794 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.423 1_14 - 260 Arch_ATPase PF01637.13 234 0.0017 11.8 0.1 1 2 3.4e-05 0.0063 9.9 0.0 8 37 90 119 87 140 0.79 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_14 - 260 Arch_ATPase PF01637.13 234 0.0017 11.8 0.1 2 2 0.071 13 -0.9 0.0 121 150 167 192 144 203 0.68 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_26 - 383 AAA_16 PF13191.1 185 1.7e-05 18.7 0.1 1 1 1.4e-06 6.4e-05 16.7 0.0 25 57 158 193 148 326 0.80 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_14 - 260 AAA_16 PF13191.1 185 0.00011 16.0 1.0 1 1 1.2e-05 0.00055 13.7 0.1 16 41 97 119 84 146 0.78 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_11 - 503 AAA_16 PF13191.1 185 0.00017 15.4 0.0 1 1 6.9e-06 0.00032 14.5 0.0 23 54 228 259 217 336 0.87 # 10092 # 11600 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.547 1_80 - 706 AAA_16 PF13191.1 185 0.00043 14.0 0.0 1 1 2.1e-05 0.00094 12.9 0.0 24 106 494 586 488 659 0.57 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 2_26 - 383 AAA_23 PF13476.1 202 4.9e-05 17.5 0.1 1 1 1.1e-06 0.0001 16.4 0.0 20 40 158 178 144 205 0.85 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_11 - 503 AAA_23 PF13476.1 202 0.00049 14.2 0.0 1 1 1e-05 0.00092 13.3 0.0 19 37 229 247 211 262 0.86 # 10092 # 11600 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.547 1_80 - 706 AAA_18 PF13238.1 129 1.1e-05 19.5 1.9 1 1 2.7e-06 0.00017 15.7 0.5 1 20 497 516 497 533 0.77 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 2_26 - 383 AAA_18 PF13238.1 129 1.2e-05 19.4 0.0 1 1 3.4e-07 2.1e-05 18.6 0.0 2 42 161 197 161 242 0.78 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_11 - 503 AAA_18 PF13238.1 129 0.0013 12.8 0.2 1 1 5.1e-05 0.0031 11.6 0.2 1 18 232 249 232 267 0.86 # 10092 # 11600 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.547 1_44 - 309 CbiA PF01656.18 195 6.6e-22 71.6 0.0 1 1 1.6e-23 1.5e-21 70.5 0.0 1 161 3 144 3 179 0.74 # 31868 # 32794 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.423 1_62 - 215 CbiA PF01656.18 195 2.3e-09 30.7 0.1 1 1 3.6e-11 3.3e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 46524 # 47168 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_14 - 260 AAA_14 PF13173.1 128 2.1e-06 21.4 0.0 1 1 2.3e-08 4.1e-06 20.5 0.0 2 96 102 203 101 221 0.67 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_11 - 503 AAA_29 PF13555.1 62 3.7e-05 17.0 0.0 1 1 2.1e-06 9.6e-05 15.7 0.0 20 40 227 246 217 262 0.80 # 10092 # 11600 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.547 2_26 - 383 AAA_29 PF13555.1 62 3.9e-05 16.9 0.0 1 1 2.1e-06 9.8e-05 15.6 0.0 25 43 159 177 149 185 0.84 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_80 - 706 AAA_29 PF13555.1 62 8.5e-05 15.9 0.4 1 1 6.1e-06 0.00028 14.2 0.1 22 40 493 511 485 524 0.83 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_14 - 260 AAA_29 PF13555.1 62 0.0014 12.0 0.0 1 1 5.7e-05 0.0026 11.1 0.0 19 59 98 139 89 141 0.72 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_14 - 260 AAA PF00004.24 132 3.4e-07 24.3 0.0 1 1 3.2e-09 5.8e-07 23.5 0.0 1 74 105 180 105 214 0.77 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_14 - 260 Bac_DnaA PF00308.13 219 2e-09 31.2 0.0 1 1 1.6e-11 2.9e-09 30.6 0.0 37 136 105 202 75 207 0.85 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_14 - 260 Sigma54_activat PF00158.21 168 0.00025 14.3 0.1 1 1 1.6e-05 0.0015 11.8 0.1 18 53 98 133 82 198 0.72 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_26 - 383 Sigma54_activat PF00158.21 168 0.0012 12.1 0.0 1 1 2.4e-05 0.0022 11.2 0.0 26 46 161 181 145 194 0.82 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_14 - 260 DUF258 PF03193.11 161 2.3e-05 17.4 0.0 1 1 3.9e-07 3.6e-05 16.8 0.0 21 78 88 157 70 192 0.71 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_80 - 706 DUF258 PF03193.11 161 4.3e-05 16.5 0.7 1 2 4.4e-06 0.00041 13.3 0.0 26 66 484 525 466 530 0.79 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_80 - 706 DUF258 PF03193.11 161 4.3e-05 16.5 0.7 2 2 0.039 3.6 0.5 0.0 23 49 580 606 560 607 0.81 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_7 - 768 TraG-D_C PF12696.2 128 3.8e-08 27.0 0.2 1 1 2.1e-10 3.8e-08 27.0 0.2 1 90 437 525 437 558 0.83 # 4544 # 6847 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_44 - 309 AAA_31 PF13614.1 157 1.7e-05 18.6 0.0 1 1 4.7e-07 8.5e-05 16.3 0.0 2 42 2 42 1 55 0.88 # 31868 # 32794 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.423 1_14 - 260 NTPase_1 PF03266.10 168 0.00043 13.8 0.1 1 2 0.0016 0.3 4.5 0.1 2 30 105 133 104 153 0.83 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_14 - 260 NTPase_1 PF03266.10 168 0.00043 13.8 0.1 2 2 0.00025 0.045 7.2 0.0 88 112 157 181 144 204 0.72 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_26 - 383 AAA_33 PF13671.1 143 0.0009 12.9 0.1 1 1 1.8e-05 0.0032 11.1 0.0 3 21 161 179 159 194 0.90 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_36 - 229 Methyltransf_26 PF13659.1 117 2.8e-11 37.3 0.0 1 2 3.5e-07 6.4e-05 16.8 0.0 57 114 7 71 2 74 0.72 # 27331 # 28017 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_36 - 229 Methyltransf_26 PF13659.1 117 2.8e-11 37.3 0.0 2 2 9.7e-08 1.8e-05 18.6 0.0 4 45 167 207 164 227 0.82 # 27331 # 28017 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_11 - 503 AAA_30 PF13604.1 196 4.1e-07 23.5 0.0 1 1 4.1e-09 7.4e-07 22.7 0.0 2 45 213 256 212 263 0.90 # 10092 # 11600 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.547 2_26 - 383 FtsK_SpoIIIE PF01580.13 205 0.0011 12.2 0.0 1 1 1e-05 0.0019 11.4 0.0 40 63 159 182 122 227 0.87 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_80 - 706 ABC_tran PF00005.22 137 6.1e-37 120.7 0.1 1 1 2.7e-38 1.2e-36 119.7 0.1 1 137 484 633 484 633 0.89 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 2_26 - 383 ABC_tran PF00005.22 137 4.4e-05 17.6 0.1 1 1 2.6e-06 0.00012 16.2 0.0 15 34 161 180 150 197 0.87 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_14 - 260 ABC_tran PF00005.22 137 0.00027 15.0 0.3 1 1 4.8e-05 0.0022 12.1 0.0 8 30 99 121 93 136 0.86 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_11 - 503 ABC_tran PF00005.22 137 0.00059 13.9 0.0 1 1 2.4e-05 0.0011 13.1 0.0 13 40 231 258 226 364 0.92 # 10092 # 11600 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.547 1_36 - 229 Cons_hypoth95 PF03602.10 183 2.1e-05 17.8 0.0 1 2 0.00034 0.062 6.4 0.0 112 148 18 56 9 82 0.66 # 27331 # 28017 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_36 - 229 Cons_hypoth95 PF03602.10 183 2.1e-05 17.8 0.0 2 2 4.2e-05 0.0077 9.4 0.0 41 62 162 183 145 217 0.79 # 27331 # 28017 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_14 - 260 RuvB_N PF05496.7 234 0.00061 12.6 0.0 1 1 6.5e-06 0.0012 11.7 0.0 50 119 102 182 92 190 0.65 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_11 - 503 AAA_19 PF13245.1 76 0.00011 15.7 0.8 1 1 4e-06 0.00024 14.6 0.1 4 37 222 256 219 271 0.70 # 10092 # 11600 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.547 1_14 - 260 AAA_19 PF13245.1 76 0.00075 13.0 0.0 1 1 3.2e-05 0.0019 11.7 0.0 10 37 103 129 96 154 0.81 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_44 - 309 AAA_19 PF13245.1 76 0.0014 12.1 0.1 1 2 0.0005 0.031 7.9 0.0 20 48 11 35 9 44 0.84 # 31868 # 32794 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.423 1_44 - 309 AAA_19 PF13245.1 76 0.0014 12.1 0.1 2 2 0.062 3.8 1.2 0.0 42 63 135 158 119 179 0.75 # 31868 # 32794 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.423 2_40 - 1015 AAA_10 PF12846.2 304 1.8e-30 100.1 0.0 1 1 1.2e-31 3.6e-30 99.1 0.0 8 303 502 898 498 899 0.89 # 33622 # 36666 # 1 # ID=2_40;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.565 1_7 - 768 AAA_10 PF12846.2 304 2.5e-06 20.8 0.1 1 1 1.5e-07 4.6e-06 20.0 0.1 2 292 137 506 136 516 0.71 # 4544 # 6847 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 2_26 - 383 AAA_10 PF12846.2 304 9.5e-06 18.9 0.0 1 2 5.7e-06 0.00017 14.8 0.0 3 27 159 183 157 197 0.87 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_26 - 383 AAA_10 PF12846.2 304 9.5e-06 18.9 0.0 2 2 0.055 1.7 1.7 0.0 193 248 290 348 259 352 0.76 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_14 - 260 AAA_10 PF12846.2 304 1.4e-05 18.4 0.6 1 1 5.7e-06 0.00017 14.8 0.1 1 33 102 134 102 171 0.89 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_44 - 309 AAA_10 PF12846.2 304 0.00022 14.5 0.1 1 1 2.8e-05 0.00086 12.5 0.0 11 39 11 39 3 64 0.90 # 31868 # 32794 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.423 1_80 - 706 AAA_10 PF12846.2 304 0.00034 13.8 0.1 1 1 8.2e-05 0.0025 11.0 0.0 6 25 499 518 496 531 0.79 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_80 - 706 SbcCD_C PF13558.1 90 0.001 12.8 0.1 1 1 5.2e-05 0.0095 9.7 0.1 61 86 620 645 591 649 0.81 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_14 - 260 ResIII PF04851.10 184 0.00068 13.2 0.0 1 2 6.9e-05 0.013 9.1 0.0 8 50 89 127 50 135 0.78 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_14 - 260 ResIII PF04851.10 184 0.00068 13.2 0.0 2 2 0.0077 1.4 2.4 0.0 112 163 131 181 125 203 0.72 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_11 - 503 DEAD PF00270.24 169 0.0013 12.0 0.0 1 1 1.1e-05 0.002 11.4 0.0 2 41 215 256 214 325 0.82 # 10092 # 11600 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.547 1_13 - 283 Methyltransf_27 PF13708.1 194 1.8e-67 220.4 0.0 1 1 1.4e-69 2.5e-67 219.9 0.0 2 194 85 278 84 278 0.96 # 11575 # 12423 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_7 - 768 TrwB_AAD_bind PF10412.4 386 4.9e-06 19.1 0.3 1 2 0.00019 0.034 6.4 0.0 11 32 132 153 126 166 0.79 # 4544 # 6847 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_7 - 768 TrwB_AAD_bind PF10412.4 386 4.9e-06 19.1 0.3 2 2 1.4e-05 0.0025 10.2 0.1 261 332 453 525 437 578 0.74 # 4544 # 6847 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_36 - 229 MethyltransfD12 PF02086.10 260 0.00087 12.5 0.0 1 2 0.019 3.4 0.7 0.0 175 188 18 31 8 70 0.84 # 27331 # 28017 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_36 - 229 MethyltransfD12 PF02086.10 260 0.00087 12.5 0.0 2 2 4e-05 0.0074 9.5 0.0 20 46 163 189 148 197 0.78 # 27331 # 28017 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_80 - 706 ArgK PF03308.11 267 0.00044 12.8 0.0 1 1 4.4e-06 0.00081 11.9 0.0 15 52 480 517 472 527 0.84 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 3_1 - 696 Plug PF07715.10 108 7.8e-31 100.4 2.9 1 1 5e-32 4.6e-30 97.9 1.3 3 108 39 151 37 151 0.91 # 506 # 2593 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.502 1_53 - 656 Plug PF07715.10 108 7.3e-24 78.0 1.7 1 1 2e-25 1.9e-23 76.7 1.7 3 108 45 148 43 148 0.94 # 38450 # 40417 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 2_26 - 383 RNA_helicase PF00910.17 107 7.4e-05 16.7 0.0 1 1 1.7e-06 0.00015 15.7 0.0 2 28 161 187 160 202 0.83 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_80 - 706 RNA_helicase PF00910.17 107 0.0021 12.0 0.8 1 2 0.00054 0.05 7.6 0.0 3 19 499 515 497 529 0.86 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_80 - 706 RNA_helicase PF00910.17 107 0.0021 12.0 0.8 2 2 0.036 3.3 1.7 0.1 48 104 621 675 617 677 0.77 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 2_1 - 214 TIGR00922 TIGR00922 172 0.00055 13.3 0.0 1 1 3.6e-06 0.00066 13.0 0.0 54 104 105 155 57 176 0.87 # 100 # 741 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 2_26 - 383 NACHT PF05729.7 166 0.0018 11.7 0.0 1 1 1.8e-05 0.0033 10.8 0.0 4 27 161 184 159 193 0.84 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_26 - 383 AAA_25 PF13481.1 194 8.9e-07 22.2 0.0 1 1 3.1e-08 1.4e-06 21.6 0.0 21 73 146 196 127 236 0.80 # 21021 # 22169 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_14 - 260 AAA_25 PF13481.1 194 4.7e-05 16.6 0.0 1 1 1.7e-06 7.6e-05 15.9 0.0 22 58 90 127 71 183 0.79 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_44 - 309 AAA_25 PF13481.1 194 0.00027 14.1 0.0 1 1 2.5e-05 0.0011 12.1 0.0 42 86 10 43 3 88 0.78 # 31868 # 32794 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.423 1_80 - 706 AAA_25 PF13481.1 194 0.00038 13.6 0.0 1 1 9.4e-05 0.0043 10.2 0.0 29 50 490 511 481 531 0.88 # 59153 # 61270 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_36 - 229 Methyltransf_15 PF09445.5 164 0.0015 11.9 0.0 1 2 0.042 7.7 -0.2 0.0 53 79 4 29 2 33 0.90 # 27331 # 28017 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_36 - 229 Methyltransf_15 PF09445.5 164 0.0015 11.9 0.0 2 2 4.4e-05 0.008 9.5 0.0 3 31 166 194 164 208 0.86 # 27331 # 28017 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_14 - 260 AAA_28 PF13521.1 163 0.0019 11.9 1.6 1 2 0.061 11 -0.3 0.1 84 110 35 63 4 82 0.66 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_14 - 260 AAA_28 PF13521.1 163 0.0019 11.9 1.6 2 2 3e-05 0.0054 10.4 0.2 1 43 104 151 104 172 0.70 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_14 - 260 AAA_5 PF07728.9 139 5.4e-05 16.7 0.3 1 2 3.6e-06 0.00066 13.2 0.2 1 74 104 173 104 180 0.72 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_14 - 260 AAA_5 PF07728.9 139 5.4e-05 16.7 0.3 2 2 0.053 9.7 -0.3 0.0 90 123 225 258 218 259 0.63 # 12676 # 13455 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/726eb55e-680f-4b39-a979-4929c2011284 # Target file: checkm_output/bins/pm2059/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2059/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/726eb55e-680f-4b39-a979-4929c2011284 checkm_output/bins/pm2059/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:03:14 2020 # [ok]