# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 7_4 - 188 Methyltransf_12 PF08242.7 99 1.7e-05 18.8 0.0 1 1 2e-07 3e-05 18.0 0.0 1 99 55 144 55 144 0.86 # 2132 # 2695 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 2_34 - 228 UPF0020 PF01170.13 180 2.2e-05 17.6 0.0 1 2 0.00031 0.047 6.7 0.0 103 119 17 33 4 88 0.74 # 24390 # 25073 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_34 - 228 UPF0020 PF01170.13 180 2.2e-05 17.6 0.0 2 2 6.3e-05 0.0095 9.0 0.0 28 54 163 189 158 220 0.67 # 24390 # 25073 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_26 - 215 cobW PF02492.14 178 0.00072 12.5 0.8 1 1 1.2e-05 0.0018 11.2 0.8 3 46 3 48 1 130 0.69 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 7_4 - 188 RrnaAD PF00398.15 262 5.2e-09 28.9 0.0 1 1 4.4e-11 6.6e-09 28.6 0.0 9 113 29 128 24 148 0.89 # 2132 # 2695 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 2_26 - 215 Thymidylate_kin PF02223.12 186 0.00067 12.5 0.3 1 2 2.2e-05 0.0034 10.2 0.0 6 29 11 34 9 47 0.91 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_26 - 215 Thymidylate_kin PF02223.12 186 0.00067 12.5 0.3 2 2 0.03 4.6 0.0 0.0 115 165 128 186 108 210 0.52 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 4_11 - 114 IstB_IS21 PF01695.12 178 8.3e-06 18.8 0.1 1 2 0.029 4.4 0.1 0.0 64 79 25 40 24 61 0.59 # 6092 # 6433 # -1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 4_11 - 114 IstB_IS21 PF01695.12 178 8.3e-06 18.8 0.1 2 2 1.8e-07 2.7e-05 17.1 0.0 1 34 56 89 56 102 0.90 # 6092 # 6433 # -1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_26 - 215 MipZ PF09140.6 261 2.9e-15 49.5 3.1 1 3 1.9e-11 2.9e-09 29.8 0.2 2 53 2 52 1 61 0.88 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_26 - 215 MipZ PF09140.6 261 2.9e-15 49.5 3.1 2 3 3.3e-08 5e-06 19.2 0.2 84 145 64 125 59 134 0.90 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_26 - 215 MipZ PF09140.6 261 2.9e-15 49.5 3.1 3 3 0.059 8.8 -1.3 0.0 219 254 182 207 172 210 0.56 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_26 - 215 YhjQ PF06564.7 244 0.00082 12.2 0.8 1 2 3.3e-05 0.0049 9.7 0.2 6 36 5 35 1 39 0.87 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_26 - 215 YhjQ PF06564.7 244 0.00082 12.2 0.8 2 2 0.015 2.3 0.9 0.0 99 160 62 124 49 131 0.63 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 1_48 - 176 SSB PF00436.20 104 1.1e-40 131.2 0.3 1 1 9.9e-43 1.5e-40 130.8 0.3 1 101 6 109 6 112 0.95 # 41301 # 41828 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 7_4 - 188 Methyltransf_18 PF12847.2 112 4.5e-10 33.6 0.0 1 1 6.3e-12 9.5e-10 32.6 0.0 4 109 53 146 50 148 0.89 # 2132 # 2695 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_5 - 1757 UvrD_C_2 PF13538.1 104 2.1e-07 24.6 0.7 1 2 0.014 2 2.1 0.0 6 43 1227 1264 1223 1294 0.75 # 2303 # 7573 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_5 - 1757 UvrD_C_2 PF13538.1 104 2.1e-07 24.6 0.7 2 2 5.2e-08 7.9e-06 19.5 0.2 3 102 1341 1444 1339 1446 0.77 # 2303 # 7573 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_25 - 876 DUF87 PF01935.12 229 3.5e-07 23.7 0.0 1 1 6.9e-09 1e-06 22.2 0.0 26 222 482 669 468 676 0.77 # 23994 # 26621 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 2_6 - 210 AAA_22 PF13401.1 131 3.2e-06 20.8 0.5 1 1 9.9e-08 1.5e-05 18.7 0.5 3 123 26 191 23 198 0.72 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 2_34 - 228 Methyltransf_11 PF08241.7 95 0.0009 13.2 0.0 1 2 0.0024 0.36 4.9 0.0 78 93 53 68 47 70 0.84 # 24390 # 25073 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_34 - 228 Methyltransf_11 PF08241.7 95 0.0009 13.2 0.0 2 2 0.0014 0.21 5.7 0.0 5 54 172 220 168 226 0.82 # 24390 # 25073 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 4_7 - 87 Rad60-SLD PF11976.3 72 0.00016 14.8 0.1 1 1 1.5e-06 0.00023 14.3 0.1 12 39 41 68 33 77 0.83 # 3052 # 3312 # 1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.414 2_26 - 215 SRP54 PF00448.17 196 4e-11 36.2 0.3 1 1 5e-13 7.5e-11 35.3 0.3 6 98 4 93 1 98 0.79 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_6 - 210 AAA_15 PF13175.1 415 3.2e-09 29.7 9.5 1 2 3.6e-07 5.5e-05 15.8 8.1 6 91 11 109 6 136 0.70 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 2_6 - 210 AAA_15 PF13175.1 415 3.2e-09 29.7 9.5 2 2 1.8e-06 0.00028 13.5 0.0 366 414 152 196 141 197 0.86 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 2_34 - 228 N6_N4_Mtase PF01555.13 231 4e-35 114.8 0.0 1 2 2e-15 3e-13 43.2 0.0 1 113 21 123 21 133 0.89 # 24390 # 25073 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_34 - 228 N6_N4_Mtase PF01555.13 231 4e-35 114.8 0.0 2 2 1.6e-23 2.3e-21 69.8 0.0 169 228 141 200 128 203 0.91 # 24390 # 25073 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_6 - 210 AAA_17 PF13207.1 121 0.00044 14.6 0.6 1 1 1.6e-05 0.00081 13.7 0.6 3 19 31 47 31 115 0.91 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 1_6 - 733 AAA_17 PF13207.1 121 0.00048 14.5 0.0 1 1 3e-05 0.0015 12.9 0.0 3 27 189 217 187 284 0.70 # 7573 # 9771 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 2_26 - 215 AAA_17 PF13207.1 121 0.00058 14.2 0.1 1 1 1.6e-05 0.00079 13.8 0.1 9 76 11 85 2 183 0.69 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_6 - 210 AAA_21 PF13304.1 303 9.6e-19 61.8 5.9 1 1 8.4e-19 1.3e-16 54.9 5.9 1 303 29 198 29 198 0.69 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 2_26 - 215 MobB PF03205.9 140 0.00023 14.4 0.2 1 1 9.1e-06 0.00046 13.4 0.2 5 39 4 39 1 88 0.70 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 1_25 - 876 MobB PF03205.9 140 0.00041 13.6 0.2 1 1 8.1e-05 0.0041 10.3 0.0 4 37 483 515 481 523 0.79 # 23994 # 26621 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 1_6 - 733 MobB PF03205.9 140 0.0015 11.7 0.0 1 1 7.9e-05 0.004 10.4 0.0 7 34 192 219 188 225 0.89 # 7573 # 9771 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 2_26 - 215 ArsA_ATPase PF02374.10 305 1.7e-08 27.3 3.9 1 3 1.6e-08 2.4e-06 20.2 0.8 6 38 5 38 1 39 0.85 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_26 - 215 ArsA_ATPase PF02374.10 305 1.7e-08 27.3 3.9 2 3 0.0001 0.015 7.7 0.0 96 135 46 87 35 89 0.83 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_26 - 215 ArsA_ATPase PF02374.10 305 1.7e-08 27.3 3.9 3 3 0.095 14 -2.0 0.0 73 108 133 167 111 187 0.54 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_26 - 215 SKI PF01202.17 158 0.001 12.4 0.4 1 2 0.0009 0.14 5.5 0.2 2 16 11 25 10 31 0.89 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_26 - 215 SKI PF01202.17 158 0.001 12.4 0.4 2 2 0.0013 0.2 5.0 0.0 87 150 31 95 24 109 0.72 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_26 - 215 Zeta_toxin PF06414.7 201 0.00018 14.1 0.0 1 1 6e-06 0.0003 13.4 0.0 20 109 4 94 1 103 0.79 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 1_28 - 104 Zeta_toxin PF06414.7 201 0.00094 11.8 0.0 1 1 2.6e-05 0.0013 11.3 0.0 14 37 68 91 57 99 0.80 # 27652 # 27963 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.397 1_6 - 733 Zeta_toxin PF06414.7 201 0.0012 11.4 0.0 1 1 0.0001 0.0053 9.3 0.0 21 49 190 219 182 236 0.85 # 7573 # 9771 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 2_6 - 210 SMC_N PF02463.14 220 1e-09 31.4 3.3 1 2 1.8e-05 0.0027 10.4 0.2 16 44 19 47 8 54 0.80 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 2_6 - 210 SMC_N PF02463.14 220 1e-09 31.4 3.3 2 2 4.3e-09 6.5e-07 22.2 0.3 127 210 125 205 58 209 0.71 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 2_26 - 215 VirC1 PF07015.6 231 3.3e-08 26.3 0.1 1 1 2.6e-10 4e-08 26.1 0.1 8 201 7 200 1 210 0.72 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_26 - 215 Fer4_NifH PF00142.13 273 0.00012 14.7 1.0 1 2 2.2e-06 0.00033 13.4 0.3 8 37 9 38 1 52 0.86 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_26 - 215 Fer4_NifH PF00142.13 273 0.00012 14.7 1.0 2 2 0.031 4.7 -0.3 0.0 189 210 67 88 42 149 0.59 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_6 - 210 Arch_ATPase PF01637.13 234 5.8e-05 16.3 0.9 1 1 7.6e-07 0.00011 15.4 0.9 18 93 25 99 19 191 0.59 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 2_6 - 210 AAA_16 PF13191.1 185 4.5e-06 20.2 0.0 1 1 1.7e-07 1.3e-05 18.7 0.0 20 164 23 199 14 208 0.61 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 1_6 - 733 AAA_16 PF13191.1 185 5.7e-06 19.9 0.0 1 1 4e-07 3e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 7573 # 9771 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 2_6 - 210 AAA_23 PF13476.1 202 6e-05 16.9 8.5 1 1 9.1e-07 0.00014 15.7 8.6 10 79 17 81 11 184 0.51 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 2_6 - 210 AAA_18 PF13238.1 129 3e-06 21.0 0.8 1 1 1.9e-06 0.00015 15.6 0.8 2 85 31 196 31 206 0.54 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 2_26 - 215 AAA_18 PF13238.1 129 0.00068 13.5 0.2 1 1 1.9e-05 0.0015 12.4 0.1 8 42 11 45 9 135 0.74 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_26 - 215 CbiA PF01656.18 195 7.1e-18 58.2 0.0 1 1 6.5e-20 9.8e-18 57.7 0.0 2 148 4 138 3 182 0.72 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 7_4 - 188 Methyltransf_25 PF13649.1 101 0.00017 15.4 0.0 1 1 1.7e-06 0.00025 14.9 0.0 1 101 54 142 54 142 0.81 # 2132 # 2695 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 2_6 - 210 SRPRB PF09439.5 181 0.00073 12.3 0.6 1 1 3.1e-05 0.0046 9.6 0.5 7 129 31 148 25 156 0.69 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 2_6 - 210 AAA_29 PF13555.1 62 1.6e-05 17.9 0.1 1 1 2.6e-07 4e-05 16.6 0.1 13 40 18 44 12 50 0.84 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 2_6 - 210 AAA PF00004.24 132 0.00018 15.2 1.6 1 1 2.8e-05 0.0042 10.8 1.6 2 119 31 201 30 208 0.55 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 2_6 - 210 MMR_HSR1 PF01926.18 116 0.00059 13.3 0.7 1 1 9.9e-06 0.0015 12.0 0.7 3 40 31 68 30 192 0.74 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 7_4 - 188 N6_Mtase PF02384.11 311 0.00023 13.8 0.0 1 2 1.6e-05 0.0025 10.4 0.0 28 64 32 68 21 83 0.87 # 2132 # 2695 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 7_4 - 188 N6_Mtase PF02384.11 311 0.00023 13.8 0.0 2 2 0.018 2.7 0.4 0.0 127 137 114 124 103 134 0.82 # 2132 # 2695 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 2_6 - 210 DUF258 PF03193.11 161 1.6e-06 20.9 0.0 1 1 2e-08 3.1e-06 19.9 0.0 33 58 24 50 3 64 0.78 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 1_6 - 733 TraG-D_C PF12696.2 128 1.2e-20 67.2 0.0 1 1 1.4e-22 2.1e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 7573 # 9771 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 2_26 - 215 AAA_31 PF13614.1 157 1.9e-09 31.2 0.2 1 2 1e-09 1.6e-07 24.9 0.1 2 42 2 42 1 70 0.86 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_26 - 215 AAA_31 PF13614.1 157 1.9e-09 31.2 0.2 2 2 0.0022 0.34 4.3 0.0 106 134 67 95 60 109 0.82 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_26 - 215 AAA_33 PF13671.1 143 0.0002 14.7 0.1 1 2 8.2e-06 0.0012 12.2 0.1 9 85 11 94 4 175 0.73 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_26 - 215 AAA_33 PF13671.1 143 0.0002 14.7 0.1 2 2 0.028 4.2 0.7 0.0 75 96 145 166 129 207 0.77 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_26 - 215 KTI12 PF08433.5 270 0.00023 13.9 0.1 1 1 6.6e-06 0.0005 12.8 0.0 11 49 11 49 1 64 0.86 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 1_28 - 104 KTI12 PF08433.5 270 0.00083 12.1 0.0 1 1 1.6e-05 0.0012 11.5 0.0 5 30 74 99 73 102 0.90 # 27652 # 27963 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.397 7_4 - 188 Methyltransf_26 PF13659.1 117 3.8e-14 46.2 0.0 1 1 9e-16 6.8e-14 45.4 0.0 2 114 52 147 51 150 0.91 # 2132 # 2695 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 2_34 - 228 Methyltransf_26 PF13659.1 117 1.4e-11 38.0 0.1 1 2 4.2e-07 3.2e-05 17.5 0.0 57 114 7 71 2 74 0.69 # 24390 # 25073 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_34 - 228 Methyltransf_26 PF13659.1 117 1.4e-11 38.0 0.1 2 2 2e-07 1.5e-05 18.5 0.0 4 44 167 206 164 222 0.82 # 24390 # 25073 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_5 - 1757 AAA_30 PF13604.1 196 2e-44 145.0 14.7 1 2 1e-05 0.00076 12.6 3.5 7 150 420 555 416 562 0.84 # 2303 # 7573 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_5 - 1757 AAA_30 PF13604.1 196 2e-44 145.0 14.7 2 2 9.9e-44 7.5e-42 136.6 1.9 1 186 968 1156 968 1162 0.94 # 2303 # 7573 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_6 - 733 AAA_30 PF13604.1 196 0.00092 12.3 0.0 1 1 2.6e-05 0.0019 11.2 0.0 21 57 188 224 180 230 0.85 # 7573 # 9771 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_25 - 876 FtsK_SpoIIIE PF01580.13 205 2.2e-05 17.5 0.1 1 2 2e-06 0.00031 13.7 0.0 39 63 476 504 463 507 0.84 # 23994 # 26621 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 1_25 - 876 FtsK_SpoIIIE PF01580.13 205 2.2e-05 17.5 0.1 2 2 0.015 2.3 1.1 0.0 75 166 530 625 529 668 0.82 # 23994 # 26621 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 7_4 - 188 MTS PF05175.9 170 1.3e-09 31.1 0.0 1 1 1.2e-11 1.8e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 2132 # 2695 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 7_4 - 188 Methyltrans_SAM PF10672.4 286 0.0014 11.0 0.0 1 1 1.3e-05 0.002 10.5 0.0 196 261 113 173 100 180 0.78 # 2132 # 2695 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 7_4 - 188 Met_10 PF02475.11 200 0.00077 12.5 0.0 1 1 7e-06 0.0011 12.1 0.0 99 189 48 132 38 145 0.78 # 2132 # 2695 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 2_6 - 210 ABC_tran PF00005.22 137 1.2e-26 87.2 0.2 1 1 2e-28 3e-26 85.9 0.0 1 137 17 163 17 163 0.92 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 2_6 - 210 TIGR03263 TIGR03263 180 0.00078 12.3 0.1 1 1 9.9e-06 0.0015 11.3 0.1 3 20 29 46 27 55 0.85 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 2_34 - 228 Cons_hypoth95 PF03602.10 183 1.5e-05 17.9 0.0 1 2 0.0004 0.06 6.2 0.0 112 146 18 54 9 82 0.65 # 24390 # 25073 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_34 - 228 Cons_hypoth95 PF03602.10 183 1.5e-05 17.9 0.0 2 2 3.1e-05 0.0046 9.8 0.0 41 62 162 183 139 219 0.75 # 24390 # 25073 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_5 - 1757 AAA_19 PF13245.1 76 2.9e-07 23.7 2.2 1 1 2.2e-08 8.5e-07 22.2 0.5 7 76 981 1047 974 1047 0.74 # 2303 # 7573 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_28 - 104 AAA_19 PF13245.1 76 0.0003 14.0 0.0 1 1 1.3e-05 0.0005 13.3 0.0 13 38 73 98 63 103 0.79 # 27652 # 27963 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.397 2_26 - 215 AAA_19 PF13245.1 76 0.0003 14.0 0.5 1 1 2.1e-05 0.00081 12.7 0.4 20 56 11 45 3 64 0.81 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_6 - 210 AAA_19 PF13245.1 76 0.0016 11.7 0.0 1 1 0.00011 0.0042 10.4 0.0 10 32 27 48 20 52 0.83 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 1_25 - 876 AAA_10 PF12846.2 304 6.4e-49 160.4 0.0 1 1 2.3e-50 1.1e-48 159.6 0.0 1 294 479 768 479 774 0.89 # 23994 # 26621 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 1_6 - 733 AAA_10 PF12846.2 304 2.1e-10 33.9 0.0 1 1 9e-11 4.5e-09 29.6 0.0 3 296 187 494 186 500 0.68 # 7573 # 9771 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 2_6 - 210 AAA_10 PF12846.2 304 3.8e-05 16.7 3.2 1 2 0.00017 0.0088 8.9 0.3 5 21 31 47 28 56 0.87 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 2_6 - 210 AAA_10 PF12846.2 304 3.8e-05 16.7 3.2 2 2 0.00021 0.011 8.7 0.2 150 277 66 205 52 209 0.84 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 2_6 - 210 SbcCD_C PF13558.1 90 0.00049 13.5 0.0 1 1 2e-05 0.003 11.0 0.0 27 89 129 178 123 179 0.83 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 7_4 - 188 Methyltransf_31 PF13847.1 152 9.4e-07 22.0 0.0 1 1 7.6e-09 1.2e-06 21.7 0.0 5 119 52 162 48 183 0.83 # 2132 # 2695 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_5 - 1757 Viral_helicase1 PF01443.13 234 0.00062 12.8 0.0 1 2 0.00014 0.021 7.8 0.0 1 118 988 1121 988 1212 0.52 # 2303 # 7573 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_5 - 1757 Viral_helicase1 PF01443.13 234 0.00062 12.8 0.0 2 2 0.0066 0.99 2.3 0.0 171 234 1387 1447 1342 1447 0.63 # 2303 # 7573 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 2_26 - 215 DUF2075 PF09848.4 352 1.2e-05 17.8 0.1 1 1 9.3e-08 1.4e-05 17.7 0.1 5 95 4 90 1 137 0.75 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 1_6 - 733 TrwB_AAD_bind PF10412.4 386 1.1e-149 491.6 0.0 1 1 1.9e-151 1.4e-149 491.3 0.0 2 386 172 561 171 561 0.99 # 7573 # 9771 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_25 - 876 TrwB_AAD_bind PF10412.4 386 6.1e-07 21.8 0.1 1 2 4.8e-08 3.6e-06 19.2 0.0 15 53 479 517 470 547 0.80 # 23994 # 26621 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 1_25 - 876 TrwB_AAD_bind PF10412.4 386 6.1e-07 21.8 0.1 2 2 0.041 3.1 -0.3 0.0 261 317 713 769 684 772 0.92 # 23994 # 26621 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 1_5 - 1757 AAA_11 PF13086.1 236 0.00032 13.8 0.0 1 1 2.1e-06 0.00032 13.8 0.0 2 75 969 1039 968 1059 0.81 # 2303 # 7573 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_6 - 733 T4SS-DNA_transf PF02534.9 469 1e-09 30.9 0.0 1 1 3.4e-11 2.5e-09 29.6 0.0 264 364 382 479 198 513 0.82 # 7573 # 9771 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_25 - 876 T4SS-DNA_transf PF02534.9 469 0.00045 12.3 0.0 1 2 0.0047 0.35 2.8 0.0 105 182 533 604 470 623 0.82 # 23994 # 26621 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 1_25 - 876 T4SS-DNA_transf PF02534.9 469 0.00045 12.3 0.0 2 2 0.00021 0.016 7.2 0.0 319 378 711 769 661 771 0.89 # 23994 # 26621 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 7_4 - 188 TIGR00755 TIGR00755 256 3.8e-09 29.3 0.0 1 1 3.4e-11 5.1e-09 28.9 0.0 8 105 29 123 25 134 0.90 # 2132 # 2695 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 2_34 - 228 MethyltransfD12 PF02086.10 260 0.00061 12.7 0.0 1 2 0.018 2.7 0.8 0.0 175 188 18 31 8 71 0.83 # 24390 # 25073 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_34 - 228 MethyltransfD12 PF02086.10 260 0.00061 12.7 0.0 2 2 3.4e-05 0.0051 9.7 0.0 15 46 156 189 147 197 0.77 # 24390 # 25073 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_25 - 876 Pox_A32 PF04665.7 241 0.0011 11.7 0.1 1 1 2.3e-05 0.0035 10.1 0.0 7 38 473 504 469 519 0.85 # 23994 # 26621 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 2_26 - 215 AAA_25 PF13481.1 194 4.9e-05 16.3 0.6 1 1 1.7e-06 0.00013 14.9 0.3 41 149 9 85 2 109 0.65 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_6 - 210 AAA_25 PF13481.1 194 0.00034 13.5 0.0 1 1 9.8e-06 0.00074 12.4 0.0 30 50 24 44 5 61 0.84 # 4559 # 5188 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 2_34 - 228 Methyltransf_15 PF09445.5 164 0.0012 11.9 0.0 1 2 0.045 6.7 -0.3 0.0 53 79 4 29 2 32 0.90 # 24390 # 25073 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_34 - 228 Methyltransf_15 PF09445.5 164 0.0012 11.9 0.0 2 2 4.3e-05 0.0066 9.5 0.0 3 31 166 194 164 208 0.86 # 24390 # 25073 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_26 - 215 APS_kinase PF01583.15 157 4.2e-06 20.0 0.1 1 1 5.8e-08 8.8e-06 18.9 0.1 11 43 10 42 2 53 0.88 # 18488 # 19132 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9dc25b9b-342f-40ce-a2b2-d35b6de3971b # Target file: checkm_output/bins/pm2056/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2056/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9dc25b9b-342f-40ce-a2b2-d35b6de3971b checkm_output/bins/pm2056/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:03:12 2020 # [ok]