# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 553 3HCDH_N PF02737.13 180 3.5e-05 12.6 0.1 1 1 8.6e-06 6.1e-05 11.9 0.1 3 72 154 223 152 242 0.83 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 Pyr_redox_2 PF07992.9 201 5.7e-33 103.6 0.0 1 1 1.7e-33 1.2e-32 102.6 0.0 1 199 2 287 2 289 0.91 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 NAD_binding_7 PF13241.1 103 3.9e-05 13.1 0.1 1 2 0.022 0.15 1.6 0.0 9 36 2 31 1 90 0.77 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 NAD_binding_7 PF13241.1 103 3.9e-05 13.1 0.1 2 2 0.0001 0.0007 9.1 0.0 9 71 152 246 146 279 0.62 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 NAD_binding_8 PF13450.1 68 1.7e-09 26.9 6.7 1 2 9.2e-07 6.5e-06 15.4 0.6 1 32 5 38 5 51 0.90 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 NAD_binding_8 PF13450.1 68 1.7e-09 26.9 6.7 2 2 4e-06 2.8e-05 13.4 0.1 2 30 156 184 155 185 0.95 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 HI0933_like PF03486.9 409 1.1e-08 23.0 5.8 1 3 0.0028 0.019 2.4 0.6 2 32 2 34 1 38 0.74 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 HI0933_like PF03486.9 409 1.1e-08 23.0 5.8 2 3 0.0036 0.025 2.1 0.1 4 35 154 185 151 189 0.90 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 HI0933_like PF03486.9 409 1.1e-08 23.0 5.8 3 3 2.1e-08 1.5e-07 19.3 0.0 112 189 194 269 186 277 0.89 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 FAD_binding_2 PF00890.19 417 0.0034 5.3 9.6 1 3 0.0038 0.027 2.3 1.4 2 28 3 29 2 43 0.75 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 FAD_binding_2 PF00890.19 417 0.0034 5.3 9.6 2 3 0.0027 0.019 2.8 0.3 138 172 188 222 135 254 0.80 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 FAD_binding_2 PF00890.19 417 0.0034 5.3 9.6 3 3 0.0019 0.013 3.3 0.0 372 402 261 285 255 288 0.88 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 Pyr_redox_3 PF13738.1 203 2.7e-10 29.8 0.1 1 2 1.1e-05 7.4e-05 12.0 0.0 88 195 63 178 45 185 0.79 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 Pyr_redox_3 PF13738.1 203 2.7e-10 29.8 0.1 2 2 2.6e-06 1.8e-05 14.0 0.0 81 146 190 253 180 282 0.83 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 Lycopene_cycl PF05834.7 374 1.4e-06 16.5 2.9 1 3 0.00072 0.005 4.8 0.2 2 40 3 41 2 42 0.90 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 Lycopene_cycl PF05834.7 374 1.4e-06 16.5 2.9 2 3 0.0013 0.0089 4.0 0.1 4 38 155 187 153 191 0.92 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 Lycopene_cycl PF05834.7 374 1.4e-06 16.5 2.9 3 3 0.00022 0.0015 6.5 0.0 90 155 194 260 189 268 0.84 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 K_oxygenase PF13434.1 341 4.5e-07 18.1 0.0 1 1 1.5e-07 1.1e-06 16.9 0.0 107 214 69 174 66 190 0.78 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 FAD_oxidored PF12831.2 428 8.5e-05 10.8 4.1 1 2 0.00026 0.0018 6.4 2.3 2 28 3 29 2 34 0.90 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 FAD_oxidored PF12831.2 428 8.5e-05 10.8 4.1 2 2 0.0014 0.01 4.0 0.0 50 120 149 221 138 240 0.68 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 DAO PF01266.19 358 5.8e-13 37.5 7.1 1 3 0.00033 0.0023 5.9 0.4 1 33 2 37 2 46 0.89 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 DAO PF01266.19 358 5.8e-13 37.5 7.1 2 3 4.1e-07 2.9e-06 15.5 0.2 5 32 156 183 152 187 0.92 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 DAO PF01266.19 358 5.8e-13 37.5 7.1 3 3 6.6e-08 4.6e-07 18.1 0.0 148 204 192 248 189 288 0.88 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 NAD_binding_9 PF13454.1 156 1.3e-06 17.4 5.2 1 4 0.023 0.16 0.9 0.1 1 33 4 33 4 43 0.82 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 NAD_binding_9 PF13454.1 156 1.3e-06 17.4 5.2 2 4 0.015 0.11 1.5 0.0 117 155 72 114 58 115 0.73 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 NAD_binding_9 PF13454.1 156 1.3e-06 17.4 5.2 3 4 0.0026 0.018 3.9 0.3 2 33 155 181 154 204 0.81 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 NAD_binding_9 PF13454.1 156 1.3e-06 17.4 5.2 4 4 3e-05 0.00021 10.2 0.0 109 154 199 244 191 246 0.80 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 Pyr_redox PF00070.22 80 6.9e-19 57.3 7.2 1 2 0.002 0.014 5.1 1.0 1 29 2 30 2 35 0.93 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_2 - 553 Pyr_redox PF00070.22 80 6.9e-19 57.3 7.2 2 2 5.1e-19 3.6e-18 55.0 0.1 3 77 154 228 152 231 0.92 # 889 # 2547 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d514da8c-b4fe-4ded-a64b-bde7106f2127 # Target file: checkm_output/bins/pm2053/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2053/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d514da8c-b4fe-4ded-a64b-bde7106f2127 checkm_output/bins/pm2053/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:03:07 2020 # [ok]