# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_84 - 488 Mg_chelatase PF01078.16 207 0.0011 12.0 0.1 1 1 1.1e-05 0.0023 11.0 0.1 1 47 215 267 215 281 0.79 # 67342 # 68805 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_115 - 372 ATP_bind_3 PF01171.15 182 0.0003 14.2 0.0 1 2 5.2e-05 0.01 9.2 0.0 1 59 52 110 52 129 0.78 # 85921 # 87036 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_115 - 372 ATP_bind_3 PF01171.15 182 0.0003 14.2 0.0 2 2 0.005 1 2.7 0.0 134 161 232 260 207 262 0.72 # 85921 # 87036 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 3_12 - 347 Seryl_tRNA_N PF02403.17 108 0.017 9.0 42.2 1 4 0.021 4.1 1.4 8.2 39 97 89 151 76 154 0.67 # 8035 # 9075 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 3_12 - 347 Seryl_tRNA_N PF02403.17 108 0.017 9.0 42.2 2 4 0.00072 0.14 6.1 2.8 50 99 146 195 143 200 0.89 # 8035 # 9075 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 3_12 - 347 Seryl_tRNA_N PF02403.17 108 0.017 9.0 42.2 3 4 2.2e-06 0.00043 14.2 10.4 20 100 217 294 202 297 0.85 # 8035 # 9075 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 3_12 - 347 Seryl_tRNA_N PF02403.17 108 0.017 9.0 42.2 4 4 0.0003 0.059 7.3 2.1 62 105 284 327 282 338 0.91 # 8035 # 9075 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 1_63 - 262 MipZ PF09140.6 261 3.6e-10 33.2 0.0 1 2 6.6e-10 1.3e-07 24.8 0.0 2 52 4 55 3 81 0.83 # 54652 # 55437 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_63 - 262 MipZ PF09140.6 261 3.6e-10 33.2 0.0 2 2 0.00031 0.063 6.2 0.0 89 122 117 150 89 166 0.74 # 54652 # 55437 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_8 - 176 SSB PF00436.20 104 2.4e-41 133.7 0.3 1 1 1.5e-43 3.1e-41 133.4 0.3 1 104 5 109 5 109 0.99 # 7311 # 7838 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.544 3_14 - 504 UvrD_C_2 PF13538.1 104 1.5e-10 35.1 0.0 1 1 3.5e-12 6.9e-10 32.9 0.0 46 99 393 463 352 467 0.67 # 9362 # 10873 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_84 - 488 AAA_2 PF07724.9 171 7e-06 19.9 0.0 1 1 1.9e-07 3.9e-05 17.5 0.0 6 92 245 325 240 333 0.90 # 67342 # 68805 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_39 - 622 DUF87 PF01935.12 229 1.5e-08 28.6 0.1 1 1 3.3e-10 3.3e-08 27.5 0.1 24 63 173 211 168 379 0.87 # 36101 # 37966 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_23 - 816 DUF87 PF01935.12 229 5.4e-08 26.8 0.2 1 1 1.1e-09 1.1e-07 25.7 0.2 24 167 452 591 432 654 0.69 # 19448 # 21895 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 3_14 - 504 AAA_22 PF13401.1 131 6.5e-05 17.0 0.0 1 2 0.00011 0.0053 10.8 0.0 8 68 23 92 17 122 0.63 # 9362 # 10873 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_14 - 504 AAA_22 PF13401.1 131 6.5e-05 17.0 0.0 2 2 0.02 0.99 3.4 0.0 82 124 189 225 164 229 0.77 # 9362 # 10873 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_10 - 323 AAA_22 PF13401.1 131 0.00025 15.1 0.0 1 1 1e-05 0.00051 14.1 0.0 5 54 62 103 56 164 0.76 # 8821 # 9789 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_39 - 622 AAA_22 PF13401.1 131 0.00025 15.1 0.0 1 1 1.7e-05 0.00083 13.4 0.0 3 68 171 231 166 287 0.83 # 36101 # 37966 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_84 - 488 AAA_22 PF13401.1 131 0.00095 13.2 1.1 1 1 0.0012 0.059 7.4 0.8 69 121 283 344 243 354 0.66 # 67342 # 68805 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 2_11 - 542 DNA_methylase PF00145.12 335 1.2e-28 94.0 0.0 1 1 6.3e-30 6.3e-28 91.7 0.0 3 333 126 441 124 443 0.77 # 4344 # 5969 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_52 - 476 DNA_methylase PF00145.12 335 2e-10 34.1 0.0 1 2 4.1e-11 4.1e-09 29.8 0.0 71 160 228 320 199 324 0.83 # 47848 # 49275 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_52 - 476 DNA_methylase PF00145.12 335 2e-10 34.1 0.0 2 2 0.011 1.1 2.1 0.0 290 330 407 448 342 452 0.73 # 47848 # 49275 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_10 - 323 AAA_3 PF07726.6 131 0.00014 15.4 0.0 1 1 1.1e-06 0.00022 14.7 0.0 3 114 65 188 63 212 0.80 # 8821 # 9789 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_68 - 415 N6_N4_Mtase PF01555.13 231 1.1e-24 81.1 0.0 1 1 1.8e-26 1.8e-24 80.3 0.0 1 228 129 389 129 392 0.81 # 59236 # 60480 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.529 2_2 - 295 N6_N4_Mtase PF01555.13 231 8e-09 29.2 0.1 1 2 3.4e-06 0.00034 14.0 0.0 180 223 28 72 4 76 0.84 # 332 # 1216 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.510 2_2 - 295 N6_N4_Mtase PF01555.13 231 8e-09 29.2 0.1 2 2 7e-06 0.0007 13.0 0.1 2 172 90 267 89 283 0.72 # 332 # 1216 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.510 1_10 - 323 AAA_17 PF13207.1 121 5e-05 18.0 0.0 1 1 1.1e-06 0.00011 16.9 0.0 3 27 65 89 64 166 0.90 # 8821 # 9789 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_84 - 488 AAA_17 PF13207.1 121 0.00025 15.8 0.0 1 1 1.3e-05 0.0013 13.5 0.0 2 63 245 299 245 388 0.63 # 67342 # 68805 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_39 - 622 MobB PF03205.9 140 0.0011 12.6 0.0 1 1 1.7e-05 0.0035 10.9 0.0 4 34 176 206 175 214 0.90 # 36101 # 37966 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_63 - 262 ArsA_ATPase PF02374.10 305 1.1e-05 18.4 0.0 1 2 3e-07 6e-05 16.0 0.0 7 40 9 43 2 79 0.84 # 54652 # 55437 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_63 - 262 ArsA_ATPase PF02374.10 305 1.1e-05 18.4 0.0 2 2 0.029 5.8 -0.3 0.0 124 136 124 136 106 143 0.79 # 54652 # 55437 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 3_14 - 504 PhoH PF02562.11 205 5.9e-06 19.5 0.2 1 2 0.0013 0.26 4.3 0.0 22 45 22 45 4 61 0.78 # 9362 # 10873 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_14 - 504 PhoH PF02562.11 205 5.9e-06 19.5 0.2 2 2 7.5e-06 0.0015 11.7 0.0 122 168 196 240 193 255 0.83 # 9362 # 10873 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_10 - 323 T2SE PF00437.15 272 7e-05 15.7 0.0 1 1 1.6e-06 0.00016 14.5 0.0 105 148 40 81 9 100 0.77 # 8821 # 9789 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_39 - 622 T2SE PF00437.15 272 0.00037 13.3 0.0 1 1 5.9e-06 0.00058 12.6 0.0 116 162 163 206 124 227 0.78 # 36101 # 37966 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_84 - 488 Zeta_toxin PF06414.7 201 0.00033 13.6 0.0 1 1 3.1e-06 0.00063 12.7 0.0 18 52 244 277 239 314 0.90 # 67342 # 68805 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_115 - 372 TIGR02432 TIGR02432 189 8e-05 16.2 0.1 1 2 1.1e-05 0.0021 11.5 0.0 1 58 52 109 52 119 0.85 # 85921 # 87036 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_115 - 372 TIGR02432 TIGR02432 189 8e-05 16.2 0.1 2 2 0.0084 1.7 2.1 0.0 140 165 235 260 207 262 0.76 # 85921 # 87036 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_10 - 323 Arch_ATPase PF01637.13 234 8.4e-05 16.2 0.0 1 1 7e-07 0.00014 15.5 0.0 4 44 45 85 43 94 0.91 # 8821 # 9789 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_10 - 323 AAA_16 PF13191.1 185 4.8e-05 17.3 0.8 1 1 2.2e-06 0.00014 15.7 0.0 7 48 47 85 42 102 0.79 # 8821 # 9789 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_23 - 816 AAA_16 PF13191.1 185 5.7e-05 17.0 0.2 1 1 4.8e-06 0.00032 14.6 0.2 20 62 447 489 439 648 0.64 # 19448 # 21895 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_48 - 206 AAA_16 PF13191.1 185 8.6e-05 16.4 0.1 1 1 1.9e-06 0.00013 15.9 0.1 27 68 11 54 3 168 0.79 # 46057 # 46674 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.513 3_12 - 347 AAA_13 PF13166.1 712 0.045 6.0 34.4 1 1 0.02 4 -0.4 34.1 290 461 141 291 75 345 0.35 # 8035 # 9075 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 1_63 - 262 CbiA PF01656.18 195 2.4e-30 99.3 0.0 1 1 3e-32 3e-30 98.9 0.0 1 170 5 205 5 229 0.77 # 54652 # 55437 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_23 - 816 CbiA PF01656.18 195 0.00078 12.7 0.0 1 1 1.7e-05 0.0017 11.7 0.0 3 49 455 517 454 593 0.60 # 19448 # 21895 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 3_14 - 504 AAA_14 PF13173.1 128 3.2e-05 17.7 1.3 1 2 2.5e-05 0.005 10.6 0.1 11 46 28 62 18 156 0.76 # 9362 # 10873 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_14 - 504 AAA_14 PF13173.1 128 3.2e-05 17.7 1.3 2 2 0.0011 0.23 5.3 0.0 51 99 176 227 127 241 0.73 # 9362 # 10873 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_10 - 323 AAA_29 PF13555.1 62 0.0024 11.3 1.0 1 1 2.7e-05 0.0053 10.2 0.3 21 38 59 76 54 79 0.86 # 8821 # 9789 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_84 - 488 AAA PF00004.24 132 4.2e-29 95.3 0.0 1 1 1.8e-30 1.8e-28 93.3 0.0 1 131 245 371 245 372 0.97 # 67342 # 68805 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_10 - 323 AAA PF00004.24 132 0.00068 13.7 0.1 1 1 1.5e-05 0.0015 12.6 0.1 2 33 65 96 64 149 0.83 # 8821 # 9789 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 4_1 - 139 Ribosomal_S8 PF00410.14 129 0.0026 11.5 1.8 1 2 0.0059 1.2 2.9 0.1 41 73 2 29 1 35 0.56 # 78 # 494 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 4_1 - 139 Ribosomal_S8 PF00410.14 129 0.0026 11.5 1.8 2 2 0.00012 0.024 8.4 0.1 50 87 90 128 50 135 0.79 # 78 # 494 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 3_14 - 504 UvrD_C PF13361.1 351 1.8e-10 34.6 0.0 1 1 1.7e-12 3.4e-10 33.7 0.0 238 347 359 468 334 472 0.76 # 9362 # 10873 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_115 - 372 PAPS_reduct PF01507.14 174 7e-12 39.4 0.4 1 2 0.028 2.8 1.6 0.0 2 17 53 68 52 91 0.76 # 85921 # 87036 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_115 - 372 PAPS_reduct PF01507.14 174 7e-12 39.4 0.4 2 2 8.8e-13 8.8e-11 35.8 0.1 58 172 154 279 145 281 0.85 # 85921 # 87036 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_15 - 818 PAPS_reduct PF01507.14 174 5e-05 17.0 0.0 1 1 2.1e-06 0.00021 15.0 0.0 3 151 69 256 67 261 0.69 # 7796 # 10249 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.523 1_60 - 212 N6_Mtase PF02384.11 311 7.4e-07 22.3 0.0 1 1 5.9e-09 1.2e-06 21.7 0.0 3 97 71 166 69 201 0.72 # 52458 # 53093 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_39 - 622 TraG-D_C PF12696.2 128 5.7e-15 49.2 0.0 1 1 1e-16 1e-14 48.4 0.0 1 124 471 595 471 599 0.83 # 36101 # 37966 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_23 - 816 TraG-D_C PF12696.2 128 1.8e-06 21.8 0.0 1 1 4e-08 4e-06 20.6 0.0 17 75 674 728 656 734 0.84 # 19448 # 21895 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_63 - 262 AAA_31 PF13614.1 157 2.6e-10 34.3 0.0 1 1 2.6e-12 5.2e-10 33.3 0.0 1 149 3 157 3 165 0.79 # 54652 # 55437 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_90 - 208 Pantoate_ligase PF02569.10 280 0.00023 13.8 0.0 1 1 1.6e-06 0.00033 13.3 0.0 111 141 38 67 17 73 0.81 # 71808 # 72431 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.462 1_84 - 488 AAA_33 PF13671.1 143 0.00055 13.7 0.0 1 1 1.6e-05 0.0016 12.2 0.0 2 33 245 297 245 399 0.73 # 67342 # 68805 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_8 - 176 AAA_33 PF13671.1 143 0.0011 12.7 0.0 1 1 1.7e-05 0.0017 12.1 0.0 26 102 33 104 23 109 0.75 # 7311 # 7838 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.544 1_68 - 415 Methyltransf_26 PF13659.1 117 0.00012 16.0 0.0 1 2 6e-06 0.0012 12.8 0.0 68 116 126 180 46 181 0.82 # 59236 # 60480 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_68 - 415 Methyltransf_26 PF13659.1 117 0.00012 16.0 0.0 2 2 0.04 7.9 0.4 0.0 1 31 352 381 352 395 0.71 # 59236 # 60480 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.529 3_14 - 504 AAA_30 PF13604.1 196 9.3e-08 25.7 0.0 1 2 9.2e-07 0.00018 15.0 0.0 19 80 20 81 11 109 0.77 # 9362 # 10873 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_14 - 504 AAA_30 PF13604.1 196 9.3e-08 25.7 0.0 2 2 0.00017 0.033 7.6 0.0 115 133 211 229 174 280 0.75 # 9362 # 10873 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_39 - 622 FtsK_SpoIIIE PF01580.13 205 1.7e-07 24.8 0.0 1 2 2.6e-08 2.5e-06 20.9 0.0 36 81 168 211 136 234 0.79 # 36101 # 37966 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_39 - 622 FtsK_SpoIIIE PF01580.13 205 1.7e-07 24.8 0.0 2 2 0.028 2.8 1.2 0.0 176 204 481 509 472 510 0.86 # 36101 # 37966 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_23 - 816 FtsK_SpoIIIE PF01580.13 205 1.5e-06 21.7 0.1 1 1 4.4e-08 4.4e-06 20.2 0.1 33 84 446 495 401 698 0.67 # 19448 # 21895 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_10 - 323 ABC_tran PF00005.22 137 0.0014 12.8 0.0 1 1 1.3e-05 0.0027 11.9 0.0 11 46 61 96 55 117 0.85 # 8821 # 9789 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 3_14 - 504 AAA_19 PF13245.1 76 3.1e-09 30.4 0.0 1 1 8.4e-11 8.3e-09 29.0 0.0 8 75 18 77 12 78 0.88 # 9362 # 10873 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_10 - 323 AAA_19 PF13245.1 76 0.00031 14.4 0.1 1 1 7e-06 0.0007 13.3 0.1 10 35 61 86 51 112 0.76 # 8821 # 9789 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_23 - 816 AAA_10 PF12846.2 304 5.4e-59 193.9 0.1 1 1 9e-61 9e-59 193.2 0.1 1 296 451 729 451 738 0.93 # 19448 # 21895 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_39 - 622 AAA_10 PF12846.2 304 1.9e-18 60.8 0.2 1 1 5.3e-20 5.3e-18 59.3 0.2 2 299 173 549 172 553 0.71 # 36101 # 37966 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 3_14 - 504 ResIII PF04851.10 184 2.1e-06 21.5 0.0 1 1 5.5e-08 5.5e-06 20.2 0.0 23 75 17 69 7 107 0.78 # 9362 # 10873 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_39 - 622 ResIII PF04851.10 184 0.00021 15.0 0.0 1 1 4.2e-06 0.00042 14.0 0.0 23 57 170 206 129 214 0.74 # 36101 # 37966 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 3_12 - 347 DUF3584 PF12128.3 1201 0.0014 9.8 44.5 1 2 0.00012 0.024 5.8 17.9 794 913 99 219 78 225 0.73 # 8035 # 9075 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 3_12 - 347 DUF3584 PF12128.3 1201 0.0014 9.8 44.5 2 2 1.2e-05 0.0024 9.0 19.5 613 708 225 326 220 344 0.80 # 8035 # 9075 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 3_14 - 504 Viral_helicase1 PF01443.13 234 1.8e-10 34.6 0.0 1 3 1.4e-05 0.0028 11.0 0.0 2 49 23 73 22 87 0.67 # 9362 # 10873 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_14 - 504 Viral_helicase1 PF01443.13 234 1.8e-10 34.6 0.0 2 3 1.8e-05 0.0036 10.7 0.0 56 105 188 234 146 257 0.78 # 9362 # 10873 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_14 - 504 Viral_helicase1 PF01443.13 234 1.8e-10 34.6 0.0 3 3 5.2e-05 0.01 9.2 0.0 176 227 404 462 344 467 0.75 # 9362 # 10873 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_39 - 622 DEAD PF00270.24 169 4.6e-05 16.8 0.0 1 1 4.4e-07 8.7e-05 15.9 0.0 13 52 171 208 159 231 0.85 # 36101 # 37966 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_84 - 488 DUF815 PF05673.8 250 3.1e-06 20.1 0.0 1 1 5e-08 9.9e-06 18.5 0.0 19 154 208 353 194 365 0.75 # 67342 # 68805 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_39 - 622 DUF853 PF05872.7 504 1.7e-06 20.5 0.0 1 1 1.4e-08 2.7e-06 19.8 0.0 7 60 158 211 153 225 0.93 # 36101 # 37966 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_39 - 622 TrwB_AAD_bind PF10412.4 386 3.9e-19 62.3 0.0 1 2 8.9e-13 8.9e-11 34.8 0.0 10 54 167 211 161 313 0.70 # 36101 # 37966 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_39 - 622 TrwB_AAD_bind PF10412.4 386 3.9e-19 62.3 0.0 2 2 6.9e-10 6.9e-08 25.3 0.0 242 377 469 609 445 616 0.82 # 36101 # 37966 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_23 - 816 TrwB_AAD_bind PF10412.4 386 4.5e-08 25.9 0.0 1 2 1.5e-05 0.0015 11.1 0.0 6 72 442 517 438 520 0.85 # 19448 # 21895 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_23 - 816 TrwB_AAD_bind PF10412.4 386 4.5e-08 25.9 0.0 2 2 5.6e-06 0.00056 12.4 0.1 232 301 643 712 613 731 0.66 # 19448 # 21895 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 3_14 - 504 AAA_11 PF13086.1 236 5.7e-07 23.2 0.1 1 1 1.9e-08 3.7e-06 20.5 0.1 23 228 25 228 8 229 0.66 # 9362 # 10873 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_23 - 816 Guanylate_kin PF00625.16 183 0.00032 14.0 0.1 1 3 0.0039 0.77 3.0 0.0 3 26 452 475 450 503 0.86 # 19448 # 21895 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_23 - 816 Guanylate_kin PF00625.16 183 0.00032 14.0 0.1 2 3 0.012 2.4 1.4 0.0 76 115 597 637 591 703 0.82 # 19448 # 21895 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_23 - 816 Guanylate_kin PF00625.16 183 0.00032 14.0 0.1 3 3 0.001 0.21 4.9 0.0 75 131 714 770 697 777 0.87 # 19448 # 21895 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_39 - 622 T4SS-DNA_transf PF02534.9 469 5.1e-05 15.8 0.0 1 2 5.6e-07 0.00011 14.7 0.0 37 114 168 248 125 346 0.72 # 36101 # 37966 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_39 - 622 T4SS-DNA_transf PF02534.9 469 5.1e-05 15.8 0.0 2 2 0.097 19 -2.6 0.0 328 389 494 555 474 572 0.74 # 36101 # 37966 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_39 - 622 ArgK PF03308.11 267 0.00022 13.9 0.0 1 1 1.8e-06 0.00037 13.2 0.0 12 68 158 209 153 214 0.88 # 36101 # 37966 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_115 - 372 tRNA_Me_trans PF03054.11 356 7.5e-05 15.2 0.0 1 2 1.1e-06 0.00023 13.6 0.0 2 71 52 122 51 144 0.74 # 85921 # 87036 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_115 - 372 tRNA_Me_trans PF03054.11 356 7.5e-05 15.2 0.0 2 2 0.042 8.3 -1.4 0.0 193 224 274 305 236 311 0.83 # 85921 # 87036 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 3_14 - 504 UvrD-helicase PF00580.16 315 1.1e-16 54.9 3.9 1 2 2.9e-06 0.00057 13.1 0.1 2 38 8 44 7 64 0.81 # 9362 # 10873 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_14 - 504 UvrD-helicase PF00580.16 315 1.1e-16 54.9 3.9 2 2 3.4e-15 6.7e-13 42.4 0.3 236 305 161 239 46 246 0.72 # 9362 # 10873 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_84 - 488 AAA_25 PF13481.1 194 0.00013 15.3 3.6 1 3 0.049 2.4 1.3 1.4 36 55 245 264 224 275 0.81 # 67342 # 68805 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_84 - 488 AAA_25 PF13481.1 194 0.00013 15.3 3.6 2 3 0.00014 0.007 9.6 0.0 127 176 287 336 270 348 0.69 # 67342 # 68805 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_84 - 488 AAA_25 PF13481.1 194 0.00013 15.3 3.6 3 3 0.017 0.83 2.9 0.0 69 172 337 440 325 448 0.66 # 67342 # 68805 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_23 - 816 AAA_25 PF13481.1 194 0.00068 12.9 0.0 1 1 3.4e-05 0.0017 11.6 0.0 36 86 454 494 447 532 0.82 # 19448 # 21895 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_63 - 262 AAA_25 PF13481.1 194 0.00078 12.7 0.0 1 1 2.4e-05 0.0012 12.1 0.0 42 91 12 51 11 134 0.78 # 54652 # 55437 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_39 - 622 AAA_25 PF13481.1 194 0.00078 12.7 0.0 1 1 4.9e-05 0.0024 11.1 0.0 20 137 159 265 145 272 0.78 # 36101 # 37966 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_10 - 323 AAA_5 PF07728.9 139 1.9e-18 60.4 0.0 1 1 1.6e-20 3.1e-18 59.7 0.0 2 125 64 188 63 197 0.94 # 8821 # 9789 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e8973182-3dcd-40bf-9110-bb53d96b416c # Target file: checkm_output/bins/pm2050/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2050/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e8973182-3dcd-40bf-9110-bb53d96b416c checkm_output/bins/pm2050/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:03:09 2020 # [ok]