# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_25 - 188 Methyltransf_12 PF08242.7 99 4.3e-05 17.3 0.0 1 1 5.6e-07 7.6e-05 16.5 0.0 1 99 55 144 55 144 0.86 # 18600 # 19163 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_16 - 228 UPF0020 PF01170.13 180 9.1e-06 18.7 0.0 1 2 0.00015 0.021 7.7 0.0 104 123 18 37 3 89 0.69 # 12233 # 12916 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_16 - 228 UPF0020 PF01170.13 180 9.1e-06 18.7 0.0 2 2 6.2e-05 0.0084 9.0 0.0 28 54 163 189 158 221 0.67 # 12233 # 12916 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_25 - 188 RrnaAD PF00398.15 262 6e-09 28.6 0.0 1 1 5.5e-11 7.6e-09 28.3 0.0 9 113 29 128 24 148 0.88 # 18600 # 19163 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_5 - 200 Seryl_tRNA_N PF02403.17 108 0.00017 15.0 7.9 1 2 0.01 1.4 2.3 0.4 52 87 93 125 79 132 0.57 # 3489 # 4088 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.732 1_5 - 200 Seryl_tRNA_N PF02403.17 108 0.00017 15.0 7.9 2 2 1.3e-06 0.00018 14.9 5.9 16 101 109 191 105 193 0.90 # 3489 # 4088 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.732 5_3 - 707 ABC_ATPase PF09818.4 448 0.00028 12.9 0.2 1 2 0.00092 0.13 4.1 0.0 241 265 491 516 477 523 0.90 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 5_3 - 707 ABC_ATPase PF09818.4 448 0.00028 12.9 0.2 2 2 0.00019 0.026 6.4 0.0 304 366 586 652 574 681 0.70 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 2_19 - 502 Rad17 PF03215.10 519 0.00016 13.8 0.0 1 1 1.7e-06 0.00024 13.2 0.0 38 63 245 270 238 305 0.88 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 2_7 - 260 IstB_IS21 PF01695.12 178 2.2e-72 235.5 0.1 1 1 2.5e-74 3.4e-72 234.9 0.1 1 178 56 235 56 235 0.98 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_12 - 389 MipZ PF09140.6 261 5.9e-06 18.8 0.4 1 2 3.5e-06 0.00048 12.6 0.0 2 47 108 153 107 157 0.87 # 8027 # 9193 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 389 MipZ PF09140.6 261 5.9e-06 18.8 0.4 2 2 0.0011 0.15 4.4 0.0 88 134 224 270 197 292 0.84 # 8027 # 9193 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_28 - 151 SSB PF00436.20 104 3.1e-41 132.9 0.3 1 1 2.6e-43 3.6e-41 132.6 0.3 1 101 6 109 6 112 0.96 # 19994 # 20446 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.585 1_25 - 188 Methyltransf_18 PF12847.2 112 2.3e-10 34.5 0.0 1 1 3.4e-12 4.6e-10 33.5 0.0 4 109 53 146 50 148 0.89 # 18600 # 19163 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 3_2 - 1757 UvrD_C_2 PF13538.1 104 6.4e-08 26.1 1.3 1 2 0.013 1.8 2.2 0.0 6 44 1227 1265 1223 1294 0.75 # 793 # 6063 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 3_2 - 1757 UvrD_C_2 PF13538.1 104 6.4e-08 26.1 1.3 2 2 1.1e-08 1.6e-06 21.6 0.3 3 102 1341 1444 1339 1446 0.77 # 793 # 6063 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 3_22 - 876 DUF87 PF01935.12 229 1.7e-08 27.9 0.0 1 1 7e-10 4.8e-08 26.4 0.0 26 222 482 669 468 676 0.77 # 21775 # 24402 # -1 # ID=3_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 5_3 - 707 DUF87 PF01935.12 229 0.00035 13.8 0.1 1 1 5.1e-06 0.00035 13.8 0.1 26 61 498 531 481 532 0.80 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 2_7 - 260 AAA_22 PF13401.1 131 2.1e-06 21.3 0.1 1 2 8.9e-05 0.003 11.0 0.0 5 21 103 119 99 131 0.83 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_7 - 260 AAA_22 PF13401.1 131 2.1e-06 21.3 0.1 2 2 0.0014 0.049 7.2 0.0 88 103 155 181 129 203 0.66 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_19 - 502 AAA_22 PF13401.1 131 1.7e-05 18.3 0.0 1 1 1.5e-06 5e-05 16.8 0.0 4 50 252 293 249 332 0.76 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 5_3 - 707 AAA_22 PF13401.1 131 3.7e-05 17.3 0.3 1 1 5.8e-06 0.0002 14.9 0.3 7 107 498 643 492 667 0.69 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_43 - 189 AAA_22 PF13401.1 131 0.00037 14.0 0.0 1 1 1.5e-05 0.0005 13.6 0.0 23 105 38 124 35 136 0.69 # 30122 # 30688 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.460 5_3 - 707 PRK PF00485.13 194 0.00096 12.1 0.0 1 1 1.3e-05 0.0018 11.2 0.0 1 22 497 518 497 560 0.88 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_16 - 228 N6_N4_Mtase PF01555.13 231 1e-36 119.9 0.0 1 1 3.3e-36 4.5e-34 111.2 0.0 1 228 21 200 21 203 0.89 # 12233 # 12916 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 5_3 - 707 AAA_17 PF13207.1 121 7.4e-08 26.6 0.0 1 1 4.2e-09 1.9e-07 25.3 0.0 1 53 497 552 497 601 0.70 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 2_19 - 502 AAA_17 PF13207.1 121 4.2e-05 17.7 0.2 1 1 5.1e-06 0.00023 15.3 0.0 1 16 254 269 254 335 0.90 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 3_5 - 736 AAA_17 PF13207.1 121 0.00045 14.4 0.0 1 1 3.6e-05 0.0016 12.6 0.0 3 27 189 217 187 262 0.68 # 6779 # 8986 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 5_3 - 707 AAA_21 PF13304.1 303 1.7e-09 31.3 0.1 1 1 8.7e-09 1.2e-06 22.0 0.1 2 297 498 662 497 667 0.84 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 2_19 - 502 MobB PF03205.9 140 0.00024 14.2 0.0 1 1 1.5e-05 0.00052 13.1 0.0 2 35 254 287 253 296 0.89 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 3_22 - 876 MobB PF03205.9 140 0.00035 13.6 0.3 1 1 0.0001 0.0036 10.4 0.1 4 38 483 516 481 523 0.79 # 21775 # 24402 # -1 # ID=3_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 5_3 - 707 MobB PF03205.9 140 0.0011 12.0 0.4 1 1 9e-05 0.0031 10.6 0.1 2 21 497 516 496 524 0.87 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_5 - 736 MobB PF03205.9 140 0.0016 11.5 0.0 1 1 0.00011 0.0036 10.4 0.0 7 34 192 219 188 225 0.89 # 6779 # 8986 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_12 - 389 ArsA_ATPase PF02374.10 305 2.4e-06 20.1 0.4 1 2 1.7e-06 0.00023 13.6 0.1 9 36 115 142 109 151 0.89 # 8027 # 9193 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 389 ArsA_ATPase PF02374.10 305 2.4e-06 20.1 0.4 2 2 0.0011 0.15 4.3 0.0 123 136 231 244 221 251 0.84 # 8027 # 9193 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 2_7 - 260 PhoH PF02562.11 205 1.5e-07 24.2 0.1 1 1 4e-09 5.5e-07 22.3 0.0 11 48 94 131 83 143 0.80 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_19 - 502 T2SE PF00437.15 272 4.9e-90 294.4 3.7 1 1 5e-92 6.9e-90 293.9 3.7 3 271 125 390 123 391 0.98 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 3_5 - 736 Zeta_toxin PF06414.7 201 0.0011 11.4 0.0 1 1 3.5e-05 0.0048 9.3 0.0 21 49 190 219 182 236 0.85 # 6779 # 8986 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 5_3 - 707 SMC_N PF02463.14 220 5.3e-09 28.9 1.0 1 2 0.0011 0.15 4.6 0.2 26 42 497 513 484 523 0.83 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 5_3 - 707 SMC_N PF02463.14 220 5.3e-09 28.9 1.0 2 2 3e-09 4.1e-07 22.8 0.0 136 210 605 675 515 682 0.74 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_12 - 389 VirC1 PF07015.6 231 9e-05 14.9 0.1 1 2 0.00028 0.038 6.3 0.0 4 42 109 147 107 154 0.91 # 8027 # 9193 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 389 VirC1 PF07015.6 231 9e-05 14.9 0.1 2 2 0.0003 0.041 6.2 0.1 84 139 235 290 222 312 0.77 # 8027 # 9193 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 2_19 - 502 Arch_ATPase PF01637.13 234 0.00061 12.9 0.0 1 1 8e-06 0.0011 12.0 0.0 15 61 248 293 242 339 0.73 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 2_19 - 502 AAA_16 PF13191.1 185 1.5e-07 24.9 0.5 1 2 0.054 1.8 1.8 0.0 40 122 121 184 120 223 0.74 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 2_19 - 502 AAA_16 PF13191.1 185 1.5e-07 24.9 0.5 2 2 8.2e-08 2.8e-06 20.8 0.1 14 117 242 354 237 398 0.68 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 3_5 - 736 AAA_16 PF13191.1 185 5.6e-06 19.8 0.0 1 1 8.1e-07 2.8e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 6779 # 8986 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 2_7 - 260 AAA_16 PF13191.1 185 0.00011 15.6 0.8 1 1 1.1e-05 0.00037 13.8 0.1 16 41 97 119 85 157 0.78 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 5_3 - 707 AAA_16 PF13191.1 185 0.00039 13.8 0.3 1 1 2.6e-05 0.00088 12.6 0.3 24 106 495 587 489 660 0.56 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 2_19 - 502 AAA_23 PF13476.1 202 3.1e-06 21.0 0.0 1 1 4.2e-08 5.8e-06 20.1 0.0 18 43 251 276 236 325 0.80 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 5_3 - 707 AAA_18 PF13238.1 129 6e-06 20.0 1.5 1 2 9.3e-07 6.4e-05 16.6 0.5 1 26 498 527 498 599 0.75 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 5_3 - 707 AAA_18 PF13238.1 129 6e-06 20.0 1.5 2 2 0.09 6.2 0.5 0.0 47 91 632 672 613 682 0.79 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 2_19 - 502 AAA_18 PF13238.1 129 2.9e-05 17.8 0.0 1 1 1.7e-06 0.00012 15.8 0.0 1 69 255 329 255 390 0.67 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_12 - 389 CbiA PF01656.18 195 1.4e-36 119.1 0.0 1 1 1.3e-38 1.8e-36 118.7 0.0 2 194 110 339 109 340 0.80 # 8027 # 9193 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_25 - 188 Methyltransf_25 PF13649.1 101 0.00011 16.0 0.0 1 1 1.1e-06 0.00016 15.4 0.0 1 101 54 142 54 142 0.83 # 18600 # 19163 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 2_7 - 260 AAA_14 PF13173.1 128 2.5e-06 20.8 0.0 1 1 7.1e-08 4.9e-06 19.8 0.0 2 96 102 203 101 221 0.66 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_19 - 502 AAA_14 PF13173.1 128 7.3e-05 16.0 0.0 1 1 2.1e-06 0.00014 15.1 0.0 3 85 253 345 251 369 0.58 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 2_19 - 502 AAA_29 PF13555.1 62 3.2e-08 26.4 0.0 1 1 2.3e-09 1e-07 24.8 0.0 22 51 252 280 241 285 0.86 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 5_3 - 707 AAA_29 PF13555.1 62 6.3e-05 15.9 0.2 1 1 4.6e-06 0.00021 14.2 0.1 22 40 494 512 486 525 0.83 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 2_7 - 260 AAA_29 PF13555.1 62 0.001 12.0 0.0 1 1 4.3e-05 0.002 11.1 0.0 19 59 98 139 89 141 0.72 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_7 - 260 AAA PF00004.24 132 7.4e-07 22.8 0.0 1 1 9.2e-09 1.3e-06 22.1 0.0 1 74 105 180 105 214 0.74 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_7 - 260 Bac_DnaA PF00308.13 219 2e-09 30.7 0.0 1 1 2.2e-11 3e-09 30.2 0.0 37 136 105 202 75 207 0.85 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_7 - 260 Sigma54_activat PF00158.21 168 0.00019 14.3 0.1 1 1 9.5e-06 0.0013 11.6 0.1 18 52 98 132 84 197 0.73 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_25 - 188 N6_Mtase PF02384.11 311 0.00033 13.1 0.0 1 2 1.6e-05 0.0022 10.4 0.0 28 64 32 68 21 83 0.87 # 18600 # 19163 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_25 - 188 N6_Mtase PF02384.11 311 0.00033 13.1 0.0 2 2 0.037 5 -0.6 0.0 127 137 114 124 104 133 0.81 # 18600 # 19163 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 2_7 - 260 DUF258 PF03193.11 161 1.8e-05 17.4 0.0 1 1 3.9e-07 2.7e-05 16.8 0.0 21 77 88 156 70 192 0.71 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 5_3 - 707 DUF258 PF03193.11 161 2.9e-05 16.7 0.6 1 2 4.5e-06 0.00031 13.3 0.0 26 66 485 526 467 531 0.79 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 5_3 - 707 DUF258 PF03193.11 161 2.9e-05 16.7 0.6 2 2 0.037 2.5 0.6 0.0 23 49 581 607 561 608 0.80 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_5 - 736 TraG-D_C PF12696.2 128 2.1e-20 66.2 0.0 1 1 2.8e-22 3.8e-20 65.4 0.0 1 127 419 541 419 542 0.86 # 6779 # 8986 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_12 - 389 AAA_31 PF13614.1 157 1.3e-09 31.5 0.0 1 2 1.4e-08 1.9e-06 21.3 0.0 2 49 108 155 107 195 0.91 # 8027 # 9193 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 389 AAA_31 PF13614.1 157 1.3e-09 31.5 0.0 2 2 0.00018 0.025 7.9 0.1 110 152 227 268 223 272 0.84 # 8027 # 9193 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 2_7 - 260 NTPase_1 PF03266.10 168 0.00035 13.7 0.1 1 2 0.0036 0.25 4.4 0.1 2 30 105 133 104 141 0.79 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_7 - 260 NTPase_1 PF03266.10 168 0.00035 13.7 0.1 2 2 0.00052 0.036 7.1 0.0 88 112 157 181 143 204 0.72 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_19 - 502 NTPase_1 PF03266.10 168 0.001 12.1 0.1 1 1 8.3e-05 0.0057 9.7 0.0 2 26 255 279 254 286 0.86 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_25 - 188 Methyltransf_26 PF13659.1 117 7.7e-14 45.1 0.0 1 1 2e-15 1.4e-13 44.3 0.0 2 114 52 147 51 150 0.91 # 18600 # 19163 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_16 - 228 Methyltransf_26 PF13659.1 117 6.2e-13 42.2 0.1 1 2 2.3e-08 1.6e-06 21.6 0.0 53 114 3 71 2 74 0.78 # 12233 # 12916 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_16 - 228 Methyltransf_26 PF13659.1 117 6.2e-13 42.2 0.1 2 2 1.9e-07 1.3e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 12233 # 12916 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_2 - 1757 AAA_30 PF13604.1 196 2e-43 141.6 14.0 1 2 2.8e-05 0.0013 11.7 3.8 7 147 420 552 416 562 0.84 # 793 # 6063 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 3_2 - 1757 AAA_30 PF13604.1 196 2e-43 141.6 14.0 2 2 7.7e-43 3.5e-41 134.3 1.4 1 186 968 1156 968 1162 0.94 # 793 # 6063 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 2_19 - 502 AAA_30 PF13604.1 196 0.00019 14.4 0.0 1 1 9e-06 0.00041 13.3 0.0 7 50 241 284 235 286 0.81 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 3_5 - 736 AAA_30 PF13604.1 196 0.00081 12.3 0.0 1 1 3.9e-05 0.0018 11.2 0.0 21 57 188 224 180 230 0.85 # 6779 # 8986 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 3_22 - 876 FtsK_SpoIIIE PF01580.13 205 5.7e-06 19.3 0.2 1 2 2e-06 0.00028 13.7 0.0 39 63 476 504 463 507 0.84 # 21775 # 24402 # -1 # ID=3_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_22 - 876 FtsK_SpoIIIE PF01580.13 205 5.7e-06 19.3 0.2 2 2 0.0038 0.53 3.0 0.1 75 167 530 626 529 632 0.85 # 21775 # 24402 # -1 # ID=3_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_25 - 188 MTS PF05175.9 170 5.9e-09 28.9 0.0 1 1 5.9e-11 8.1e-09 28.4 0.0 31 141 50 149 41 166 0.84 # 18600 # 19163 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_25 - 188 Methyltrans_SAM PF10672.4 286 0.00054 12.2 0.0 1 1 5.5e-06 0.00075 11.7 0.0 195 261 112 173 94 180 0.81 # 18600 # 19163 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 5_3 - 707 ABC_tran PF00005.22 137 5.1e-37 120.6 0.0 1 1 2.3e-38 1e-36 119.6 0.0 1 137 485 634 485 634 0.89 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 2_19 - 502 ABC_tran PF00005.22 137 9.4e-05 16.1 0.0 1 1 4.8e-06 0.00022 14.9 0.0 13 57 254 302 249 371 0.73 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 2_7 - 260 ABC_tran PF00005.22 137 0.00022 14.9 0.2 1 1 3.9e-05 0.0018 12.0 0.0 8 30 99 121 93 131 0.86 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_16 - 228 Cons_hypoth95 PF03602.10 183 1.5e-05 17.8 0.0 1 2 0.0003 0.041 6.6 0.0 112 146 18 54 1 82 0.62 # 12233 # 12916 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_16 - 228 Cons_hypoth95 PF03602.10 183 1.5e-05 17.8 0.0 2 2 4e-05 0.0055 9.4 0.0 41 62 162 183 145 218 0.78 # 12233 # 12916 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_7 - 260 RuvB_N PF05496.7 234 0.00056 12.3 0.0 1 1 7.5e-06 0.001 11.5 0.0 50 119 102 182 92 190 0.64 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_2 - 1757 AAA_19 PF13245.1 76 3.1e-07 23.5 3.1 1 1 1.3e-08 6.1e-07 22.5 0.3 7 76 981 1047 974 1047 0.74 # 793 # 6063 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 2_19 - 502 AAA_19 PF13245.1 76 1.8e-06 21.0 0.0 1 1 1.9e-07 8.6e-06 18.9 0.0 4 35 245 276 242 291 0.76 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 2_7 - 260 AAA_19 PF13245.1 76 0.00056 13.1 0.0 1 1 2.9e-05 0.0013 11.8 0.0 10 37 103 129 96 160 0.80 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_22 - 876 AAA_10 PF12846.2 304 3e-49 161.4 0.0 1 1 1.5e-50 5.2e-49 160.6 0.0 1 294 479 768 479 774 0.88 # 21775 # 24402 # -1 # ID=3_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_5 - 736 AAA_10 PF12846.2 304 3.1e-10 33.2 0.0 1 1 2.3e-10 7.9e-09 28.6 0.0 3 296 187 494 186 498 0.67 # 6779 # 8986 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 2_7 - 260 AAA_10 PF12846.2 304 1.3e-05 18.0 0.6 1 2 3.8e-06 0.00013 14.8 0.1 1 33 102 134 102 171 0.89 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_7 - 260 AAA_10 PF12846.2 304 1.3e-05 18.0 0.6 2 2 0.088 3 0.5 0.0 201 247 141 192 132 202 0.71 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 5_3 - 707 AAA_10 PF12846.2 304 0.00025 13.9 0.1 1 1 5.4e-05 0.0019 11.0 0.0 6 25 500 519 497 532 0.79 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 5_3 - 707 SbcCD_C PF13558.1 90 0.00077 12.8 0.1 1 1 5.2e-05 0.0072 9.7 0.1 61 86 621 646 592 650 0.81 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 2_7 - 260 ResIII PF04851.10 184 0.00076 12.7 0.0 1 2 7e-05 0.0096 9.1 0.0 8 51 89 128 70 138 0.75 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_7 - 260 ResIII PF04851.10 184 0.00076 12.7 0.0 2 2 0.014 1.9 1.6 0.0 112 163 131 181 128 204 0.70 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_25 - 188 Methyltransf_31 PF13847.1 152 8.2e-07 22.1 0.0 1 1 7.7e-09 1.1e-06 21.7 0.0 5 119 52 162 48 183 0.83 # 18600 # 19163 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 3_5 - 736 TrwB_AAD_bind PF10412.4 386 1.5e-150 494.4 0.0 1 1 2.6e-152 1.8e-150 494.1 0.0 2 386 172 561 171 561 0.99 # 6779 # 8986 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 3_22 - 876 TrwB_AAD_bind PF10412.4 386 2.3e-08 26.3 0.1 1 2 2e-09 1.3e-07 23.8 0.0 15 58 479 522 470 552 0.84 # 21775 # 24402 # -1 # ID=3_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_22 - 876 TrwB_AAD_bind PF10412.4 386 2.3e-08 26.3 0.1 2 2 0.041 2.8 -0.3 0.0 261 317 713 769 684 772 0.92 # 21775 # 24402 # -1 # ID=3_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_2 - 1757 AAA_11 PF13086.1 236 0.00012 15.0 1.4 1 1 6.6e-06 0.00045 13.1 0.0 2 72 969 1036 968 1062 0.82 # 793 # 6063 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 2_19 - 502 AAA_11 PF13086.1 236 0.00068 12.6 0.0 1 1 2.3e-05 0.0016 11.4 0.0 7 75 241 303 235 367 0.58 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 3_5 - 736 T4SS-DNA_transf PF02534.9 469 3e-10 32.5 0.0 1 2 0.055 3.8 -0.8 0.0 127 193 259 324 198 360 0.71 # 6779 # 8986 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 3_5 - 736 T4SS-DNA_transf PF02534.9 469 3e-10 32.5 0.0 2 2 1.3e-11 8.8e-10 31.0 0.0 250 361 362 476 283 500 0.73 # 6779 # 8986 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 3_22 - 876 T4SS-DNA_transf PF02534.9 469 0.00023 13.1 0.0 1 2 0.0027 0.19 3.5 0.0 104 184 532 606 465 625 0.79 # 21775 # 24402 # -1 # ID=3_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_22 - 876 T4SS-DNA_transf PF02534.9 469 0.00023 13.1 0.0 2 2 0.00021 0.015 7.2 0.0 319 378 711 769 662 771 0.90 # 21775 # 24402 # -1 # ID=3_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_25 - 188 TIGR00755 TIGR00755 256 2.8e-09 29.6 0.0 1 1 2.8e-11 3.8e-09 29.2 0.0 8 105 29 123 25 134 0.90 # 18600 # 19163 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_16 - 228 MethyltransfD12 PF02086.10 260 0.00049 12.9 0.0 1 2 0.013 1.7 1.3 0.0 176 188 19 31 7 87 0.85 # 12233 # 12916 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_16 - 228 MethyltransfD12 PF02086.10 260 0.00049 12.9 0.0 2 2 4e-05 0.0055 9.5 0.0 20 46 163 189 148 197 0.78 # 12233 # 12916 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 5_3 - 707 ArgK PF03308.11 267 0.00033 12.8 0.0 1 1 4.4e-06 0.00061 11.9 0.0 15 52 481 518 473 528 0.84 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_22 - 876 Pox_A32 PF04665.7 241 0.0012 11.5 0.0 1 1 2.4e-05 0.0033 10.0 0.0 7 38 473 504 469 516 0.84 # 21775 # 24402 # -1 # ID=3_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 5_3 - 707 RNA_helicase PF00910.17 107 0.0015 12.1 0.8 1 2 0.00027 0.037 7.6 0.0 3 19 500 516 498 530 0.86 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 5_3 - 707 RNA_helicase PF00910.17 107 0.0015 12.1 0.8 2 2 0.018 2.5 1.7 0.1 48 104 622 676 618 678 0.77 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 2_7 - 260 AAA_24 PF13479.1 213 0.0015 11.5 0.0 1 1 3.5e-05 0.0048 9.8 0.0 3 21 102 120 100 127 0.84 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_7 - 260 AAA_25 PF13481.1 194 3.3e-05 16.7 0.0 1 1 1.2e-06 5.6e-05 15.9 0.0 22 58 90 127 71 183 0.79 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 5_3 - 707 AAA_25 PF13481.1 194 0.00032 13.5 0.0 1 2 7e-05 0.0032 10.2 0.0 29 50 491 512 482 532 0.88 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 5_3 - 707 AAA_25 PF13481.1 194 0.00032 13.5 0.0 2 2 0.098 4.5 -0.1 0.0 135 188 618 662 596 663 0.74 # 3243 # 5363 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 2_19 - 502 AAA_25 PF13481.1 194 0.00075 12.3 0.0 1 1 5.2e-05 0.0024 10.6 0.0 29 52 248 271 226 327 0.88 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_16 - 228 Methyltransf_15 PF09445.5 164 0.0013 11.6 0.0 1 2 0.057 7.8 -0.6 0.0 53 79 4 29 2 33 0.87 # 12233 # 12916 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_16 - 228 Methyltransf_15 PF09445.5 164 0.0013 11.6 0.0 2 2 4.2e-05 0.0058 9.5 0.0 3 31 166 194 164 209 0.86 # 12233 # 12916 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_7 - 260 AAA_28 PF13521.1 163 0.0014 11.9 1.2 1 2 0.087 12 -0.8 0.1 86 108 37 60 9 80 0.67 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_7 - 260 AAA_28 PF13521.1 163 0.0014 11.9 1.2 2 2 3.9e-05 0.0053 10.1 0.2 1 40 104 148 104 166 0.70 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_7 - 260 AAA_5 PF07728.9 139 4e-05 16.7 0.2 1 1 6.5e-06 0.00044 13.3 0.1 1 74 104 173 104 187 0.75 # 3852 # 4631 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_19 - 502 AAA_5 PF07728.9 139 0.00095 12.3 0.0 1 1 3.7e-05 0.0025 10.9 0.0 2 95 255 351 254 383 0.70 # 18852 # 20357 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/804d78de-8599-4646-97d9-0566f5635369 # Target file: checkm_output/bins/pm2049/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2049/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/804d78de-8599-4646-97d9-0566f5635369 checkm_output/bins/pm2049/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:03:07 2020 # [ok]