# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 207 cobW PF02492.14 178 0.00015 13.4 0.2 1 2 1.8e-05 0.0011 10.6 0.0 10 38 12 41 3 47 0.86 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_5 - 207 cobW PF02492.14 178 0.00015 13.4 0.2 2 2 0.019 1.2 0.7 0.1 114 146 115 147 71 170 0.78 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_35 - 344 IstB_IS21 PF01695.12 178 0.00033 12.3 0.0 1 1 1.1e-05 0.00065 11.3 0.0 44 66 160 182 136 186 0.87 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_5 - 207 MipZ PF09140.6 261 1e-14 46.3 0.8 1 2 2.5e-11 7.3e-10 30.4 0.0 2 47 3 47 2 61 0.88 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_5 - 207 MipZ PF09140.6 261 1e-14 46.3 0.8 2 2 1.7e-06 5.1e-05 14.6 0.3 96 141 73 118 54 144 0.86 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_8 - 355 MipZ PF09140.6 261 9.1e-10 30.1 0.0 1 2 2.4e-08 7.1e-07 20.7 0.0 3 39 4 40 2 49 0.91 # 5056 # 6120 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 1_8 - 355 MipZ PF09140.6 261 9.1e-10 30.1 0.0 2 2 0.00028 0.0084 7.3 0.0 96 128 148 180 137 198 0.82 # 5056 # 6120 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 1_8 - 355 YhjQ PF06564.7 244 1.8e-12 39.3 0.0 1 2 3.3e-09 2e-07 22.8 0.0 1 45 1 45 1 51 0.91 # 5056 # 6120 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 1_8 - 355 YhjQ PF06564.7 244 1.8e-12 39.3 0.0 2 2 1.2e-06 7.1e-05 14.4 0.0 103 151 137 184 127 199 0.87 # 5056 # 6120 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 1_35 - 344 AAA_22 PF13401.1 131 0.00037 12.8 0.0 1 1 1.1e-05 0.00064 12.0 0.0 5 30 164 189 160 241 0.69 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_5 - 207 DUF1611 PF07755.6 301 2e-06 18.8 0.2 1 1 5.2e-08 3.1e-06 18.1 0.2 124 200 13 90 11 107 0.86 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_5 - 207 ATP_bind_1 PF03029.12 238 2.8e-05 15.9 0.0 1 1 2.5e-06 4.9e-05 15.1 0.0 6 42 12 48 10 74 0.85 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_8 - 355 ATP_bind_1 PF03029.12 238 0.00029 12.6 0.0 1 1 9.3e-05 0.0018 9.9 0.0 6 36 12 42 10 46 0.94 # 5056 # 6120 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 1_35 - 344 ATP_bind_1 PF03029.12 238 0.00055 11.6 0.0 1 1 4.2e-05 0.00083 11.0 0.0 2 23 169 190 168 206 0.87 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_5 - 207 SRP54 PF00448.17 196 6.2e-05 14.7 0.4 1 1 3.9e-06 0.00023 12.8 0.3 11 53 12 49 2 132 0.72 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_35 - 344 AAA_17 PF13207.1 121 2.8e-05 17.1 0.0 1 1 2.2e-06 6.4e-05 16.0 0.0 2 43 166 207 165 243 0.80 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_5 - 207 AAA_17 PF13207.1 121 4.9e-05 16.3 0.0 1 1 2.1e-06 6.3e-05 16.0 0.0 9 80 12 86 11 180 0.71 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_5 - 207 MobB PF03205.9 140 1.5e-06 20.1 0.4 1 1 2.7e-07 8e-06 17.8 0.1 10 104 12 88 2 104 0.68 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_35 - 344 MobB PF03205.9 140 5.9e-05 15.0 0.0 1 1 3.4e-06 0.0001 14.2 0.0 2 42 165 204 164 227 0.86 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_5 - 207 LpxK PF02606.9 326 3.1e-05 15.1 0.1 1 1 8.4e-07 4.9e-05 14.5 0.1 46 71 11 36 2 38 0.94 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_8 - 355 ArsA_ATPase PF02374.10 305 2.4e-11 35.3 0.1 1 2 7.7e-12 2.3e-10 32.1 0.1 5 46 6 47 1 68 0.89 # 5056 # 6120 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 1_8 - 355 ArsA_ATPase PF02374.10 305 2.4e-11 35.3 0.1 2 2 0.026 0.78 0.8 0.0 122 141 146 165 138 167 0.83 # 5056 # 6120 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 1_5 - 207 ArsA_ATPase PF02374.10 305 1.7e-08 25.9 0.2 1 1 9.7e-10 2.9e-08 25.2 0.2 5 45 6 46 1 66 0.90 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_35 - 344 T2SE PF00437.15 272 1.6e-53 173.4 0.0 1 1 3.4e-55 2e-53 173.1 0.0 12 267 25 312 16 316 0.88 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_35 - 344 Zeta_toxin PF06414.7 201 1.1e-05 16.8 0.0 1 1 2.9e-07 1.7e-05 16.1 0.0 6 59 153 208 148 232 0.81 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_5 - 207 VirC1 PF07015.6 231 4.8e-15 47.4 0.2 1 1 3.2e-16 9.3e-15 46.4 0.2 1 131 1 123 1 174 0.80 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_8 - 355 VirC1 PF07015.6 231 7.6e-05 14.0 0.1 1 1 7.8e-06 0.00023 12.4 0.0 1 40 1 40 1 46 0.89 # 5056 # 6120 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 1_5 - 207 Fer4_NifH PF00142.13 273 9.2e-07 20.4 0.0 1 1 5.5e-08 1.6e-06 19.6 0.0 8 64 10 66 3 89 0.90 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_8 - 355 Fer4_NifH PF00142.13 273 1.8e-06 19.4 0.0 1 1 9.5e-08 2.8e-06 18.8 0.0 7 47 9 49 2 66 0.84 # 5056 # 6120 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 1_35 - 344 AAA_16 PF13191.1 185 0.00079 11.6 0.0 1 1 1.9e-05 0.0011 11.1 0.0 22 54 161 194 151 300 0.75 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_35 - 344 AAA_23 PF13476.1 202 0.00019 13.9 0.1 1 1 6e-06 0.00035 13.1 0.1 21 38 165 182 152 186 0.88 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_8 - 355 CbiA PF01656.18 195 3.6e-31 100.2 0.0 1 1 2e-32 5.8e-31 99.5 0.0 1 172 4 249 4 279 0.85 # 5056 # 6120 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 1_5 - 207 CbiA PF01656.18 195 5.5e-29 93.1 1.5 1 1 4.8e-30 1.4e-28 91.8 1.5 1 142 4 123 4 162 0.77 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_35 - 344 KaiC PF06745.8 227 0.00026 12.3 0.0 1 1 7.9e-06 0.00046 11.5 0.0 6 37 150 181 147 189 0.90 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_35 - 344 AAA_29 PF13555.1 62 8.5e-05 14.3 0.0 1 1 3.1e-06 0.00018 13.2 0.0 21 43 161 183 149 187 0.83 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_35 - 344 DUF258 PF03193.11 161 0.00011 13.5 0.0 1 1 3.1e-06 0.00018 12.9 0.0 31 59 158 187 141 220 0.80 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_36 - 612 TraG-D_C PF12696.2 128 1.5e-27 88.2 0.0 1 1 4.3e-29 2.6e-27 87.4 0.0 2 127 416 534 415 535 0.87 # 25373 # 27208 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.419 1_8 - 355 AAA_31 PF13614.1 157 7.6e-15 47.3 0.0 1 2 2.2e-11 6.3e-10 31.3 0.0 1 64 2 62 2 91 0.83 # 5056 # 6120 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 1_8 - 355 AAA_31 PF13614.1 157 7.6e-15 47.3 0.0 2 2 5.2e-06 0.00015 13.8 0.1 112 154 144 186 112 187 0.91 # 5056 # 6120 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 1_5 - 207 AAA_31 PF13614.1 157 1e-08 27.4 0.2 1 2 2e-08 5.9e-07 21.7 0.0 1 39 2 40 2 53 0.94 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_5 - 207 AAA_31 PF13614.1 157 1e-08 27.4 0.2 2 2 0.0095 0.28 3.2 0.0 115 152 74 109 59 114 0.83 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_5 - 207 NTPase_1 PF03266.10 168 0.00019 13.4 0.1 1 2 1.1e-05 0.00067 11.5 0.0 7 58 10 66 5 94 0.80 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_5 - 207 NTPase_1 PF03266.10 168 0.00019 13.4 0.1 2 2 0.084 5 -1.0 0.1 76 99 149 172 119 176 0.66 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_35 - 344 AAA_33 PF13671.1 143 6.3e-06 18.3 0.0 1 2 0.07 4.1 -0.6 0.0 7 39 96 127 93 164 0.78 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_35 - 344 AAA_33 PF13671.1 143 6.3e-06 18.3 0.0 2 2 4.7e-07 2.8e-05 16.2 0.0 2 25 166 194 165 274 0.71 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_5 - 207 AAA_30 PF13604.1 196 0.00018 13.3 0.6 1 2 7.4e-06 0.00044 12.0 0.1 26 106 10 88 2 97 0.75 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_5 - 207 AAA_30 PF13604.1 196 0.00018 13.3 0.6 2 2 0.095 5.6 -1.4 0.0 33 59 145 171 144 175 0.86 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_35 - 344 ABC_tran PF00005.22 137 2.7e-05 16.7 0.0 1 1 1.2e-06 7.3e-05 15.3 0.0 7 33 159 185 155 228 0.84 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_28 - 918 AAA_10 PF12846.2 304 1.2e-35 115.5 0.0 1 1 6.9e-37 2e-35 114.8 0.0 3 294 539 825 538 832 0.93 # 16358 # 19111 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_5 - 207 AAA_10 PF12846.2 304 7.6e-06 17.6 0.0 1 1 4.7e-07 1.4e-05 16.8 0.0 11 47 12 50 10 69 0.82 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_35 - 344 DEAD PF00270.24 169 0.00012 13.8 0.0 1 1 3.4e-06 0.0002 13.0 0.0 6 33 154 182 150 246 0.77 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_36 - 612 TrwB_AAD_bind PF10412.4 386 2.3e-21 67.9 0.0 1 1 6.2e-23 3.7e-21 67.3 0.0 165 380 331 548 306 552 0.86 # 25373 # 27208 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.419 1_35 - 344 Guanylate_kin PF00625.16 183 0.00053 11.6 0.0 1 1 1.5e-05 0.00086 10.9 0.0 1 39 162 201 162 222 0.85 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_36 - 612 T4SS-DNA_transf PF02534.9 469 1e-145 478.0 0.0 1 1 2.1e-147 1.3e-145 477.7 0.0 2 461 102 571 101 578 0.98 # 25373 # 27208 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.419 1_5 - 207 ArgK PF03308.11 267 6.3e-05 14.0 0.0 1 1 5.1e-06 0.00015 12.7 0.0 39 72 12 45 5 53 0.90 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_8 - 355 ArgK PF03308.11 267 0.00049 11.0 0.0 1 1 3.7e-05 0.0011 9.9 0.0 38 72 11 45 7 62 0.88 # 5056 # 6120 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 1_35 - 344 UPF0079 PF02367.12 123 0.00021 13.1 0.0 1 1 6.4e-06 0.00037 12.3 0.0 7 39 155 187 149 196 0.83 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_5 - 207 AAA_24 PF13479.1 213 0.00038 12.2 0.7 1 2 1.7e-05 0.00098 10.9 0.1 12 88 11 95 3 99 0.81 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_5 - 207 AAA_24 PF13479.1 213 0.00038 12.2 0.7 2 2 0.078 4.6 -1.1 0.0 168 206 118 156 115 164 0.79 # 3730 # 4350 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_35 - 344 AAA_25 PF13481.1 194 0.00011 13.8 0.0 1 1 2.6e-06 0.00016 13.3 0.0 21 52 151 182 139 249 0.84 # 24339 # 25370 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/29f5c1dd-af16-44dd-afe3-cefaca8f7f86 # Target file: checkm_output/bins/pm2047/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2047/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/29f5c1dd-af16-44dd-afe3-cefaca8f7f86 checkm_output/bins/pm2047/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:03:06 2020 # [ok]