# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_35 - 895 UPF0020 PF01170.13 180 0.0003 12.2 0.0 1 1 3.1e-05 0.0014 10.0 0.0 31 81 348 413 332 428 0.69 # 26904 # 29588 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.452 1_29 - 206 MipZ PF09140.6 261 8.2e-13 39.7 0.3 1 2 4.7e-09 2.1e-07 22.0 0.0 2 46 3 45 2 62 0.83 # 22056 # 22673 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_29 - 206 MipZ PF09140.6 261 8.2e-13 39.7 0.3 2 2 2.3e-07 1e-05 16.4 0.1 94 141 70 117 45 149 0.82 # 22056 # 22673 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_20 - 579 DUF87 PF01935.12 229 2.6e-10 32.2 0.1 1 1 1.4e-11 6.5e-10 30.9 0.1 8 80 174 250 168 409 0.71 # 15302 # 17038 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_20 - 579 AAA_22 PF13401.1 131 0.00014 13.8 0.0 1 2 0.00058 0.013 7.4 0.0 5 63 190 243 185 285 0.70 # 15302 # 17038 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_20 - 579 AAA_22 PF13401.1 131 0.00014 13.8 0.0 2 2 0.0086 0.19 3.6 0.0 71 118 373 427 306 441 0.78 # 15302 # 17038 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_8 - 913 AAA_22 PF13401.1 131 0.00048 12.1 0.0 1 2 0.00036 0.0081 8.1 0.0 6 28 534 556 529 596 0.76 # 4515 # 7253 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_8 - 913 AAA_22 PF13401.1 131 0.00048 12.1 0.0 2 2 0.06 1.3 0.9 0.0 77 125 739 789 734 795 0.77 # 4515 # 7253 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_8 - 913 AAA_21 PF13304.1 303 5.3e-05 15.0 0.1 1 2 7.5e-06 0.00034 12.4 0.0 2 47 535 573 534 654 0.69 # 4515 # 7253 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_8 - 913 AAA_21 PF13304.1 303 5.3e-05 15.0 0.1 2 2 0.048 2.2 -0.1 0.0 35 91 688 745 667 793 0.73 # 4515 # 7253 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_34 - 672 Helicase_C PF00271.26 78 9.4e-09 26.9 0.1 1 2 0.02 0.9 1.3 0.0 23 42 114 133 110 136 0.87 # 24846 # 26861 # -1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_34 - 672 Helicase_C PF00271.26 78 9.4e-09 26.9 0.1 2 2 4.2e-09 1.9e-07 22.7 0.0 34 77 328 375 284 376 0.88 # 24846 # 26861 # -1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_29 - 206 ArsA_ATPase PF02374.10 305 2.8e-06 18.3 0.5 1 2 1.5e-07 6.7e-06 17.0 0.1 5 45 6 45 1 56 0.84 # 22056 # 22673 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_29 - 206 ArsA_ATPase PF02374.10 305 2.8e-06 18.3 0.5 2 2 0.055 2.5 -1.2 0.0 124 135 72 83 50 85 0.76 # 22056 # 22673 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_16 - 342 T2SE PF00437.15 272 2.4e-48 156.1 0.0 1 1 6.2e-50 2.8e-48 155.9 0.0 7 240 18 279 12 312 0.94 # 12421 # 13446 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_8 - 913 SMC_N PF02463.14 220 0.0005 11.1 0.0 1 1 2.6e-05 0.0012 9.9 0.0 14 41 522 549 514 553 0.81 # 4515 # 7253 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_29 - 206 VirC1 PF07015.6 231 5.1e-15 46.9 0.2 1 1 2.3e-16 1e-14 45.9 0.2 1 123 1 114 1 174 0.79 # 22056 # 22673 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_29 - 206 Fer4_NifH PF00142.13 273 0.00016 12.6 0.0 1 1 5.6e-06 0.00025 12.0 0.0 8 62 10 63 3 91 0.75 # 22056 # 22673 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_8 - 913 AAA_16 PF13191.1 185 4.9e-05 15.1 0.0 1 2 2.6e-05 0.0012 10.7 0.0 18 51 526 558 516 584 0.81 # 4515 # 7253 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_8 - 913 AAA_16 PF13191.1 185 4.9e-05 15.1 0.0 2 2 0.013 0.6 1.8 0.0 137 166 737 765 614 786 0.73 # 4515 # 7253 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_8 - 913 AAA_23 PF13476.1 202 5.7e-06 18.5 0.0 1 2 0.058 2.6 0.1 0.0 131 175 167 258 144 283 0.60 # 4515 # 7253 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_8 - 913 AAA_23 PF13476.1 202 5.7e-06 18.5 0.0 2 2 9.9e-07 4.5e-05 15.6 0.0 18 53 531 568 519 651 0.78 # 4515 # 7253 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_29 - 206 CbiA PF01656.18 195 7e-27 85.8 0.5 1 1 2.6e-28 1.2e-26 85.1 0.5 1 161 4 141 4 173 0.72 # 22056 # 22673 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_35 - 895 N6_Mtase PF02384.11 311 1.3e-06 19.4 0.0 1 1 5.9e-08 2.6e-06 18.4 0.0 47 108 346 424 282 490 0.80 # 26904 # 29588 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.452 1_20 - 579 TraG-D_C PF12696.2 128 3.2e-10 31.8 0.0 1 1 1.3e-11 6e-10 30.9 0.0 2 90 399 490 398 515 0.84 # 15302 # 17038 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_29 - 206 AAA_31 PF13614.1 157 1.6e-09 29.6 0.0 1 2 3.1e-08 1.4e-06 20.1 0.0 1 42 2 42 2 65 0.86 # 22056 # 22673 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_29 - 206 AAA_31 PF13614.1 157 1.6e-09 29.6 0.0 2 2 0.0002 0.0092 7.7 0.0 116 152 70 108 57 112 0.84 # 22056 # 22673 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_35 - 895 Methyltransf_26 PF13659.1 117 1.5e-13 42.6 0.0 1 1 1.6e-14 7.4e-13 40.4 0.0 3 97 348 490 346 543 0.74 # 26904 # 29588 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.452 1_20 - 579 FtsK_SpoIIIE PF01580.13 205 1.5e-05 16.3 0.0 1 2 4e-06 0.00018 12.8 0.0 27 63 176 214 166 228 0.81 # 15302 # 17038 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_20 - 579 FtsK_SpoIIIE PF01580.13 205 1.5e-05 16.3 0.0 2 2 0.015 0.7 1.1 0.0 146 203 365 435 289 437 0.67 # 15302 # 17038 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_16 - 342 ABC_tran PF00005.22 137 0.00013 14.1 0.0 1 1 4.6e-06 0.00021 13.4 0.0 7 34 156 183 153 221 0.91 # 12421 # 13446 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_8 - 913 AAA_10 PF12846.2 304 1.4e-34 111.6 0.0 1 1 1.3e-35 2.9e-34 110.6 0.0 2 294 533 822 532 828 0.83 # 4515 # 7253 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_20 - 579 AAA_10 PF12846.2 304 2.6e-12 38.5 0.0 1 2 6.6e-08 1.5e-06 19.6 0.0 2 66 190 261 189 284 0.77 # 15302 # 17038 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_20 - 579 AAA_10 PF12846.2 304 2.6e-12 38.5 0.0 2 2 6.7e-07 1.5e-05 16.3 0.0 210 297 390 477 347 481 0.77 # 15302 # 17038 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_34 - 672 ResIII PF04851.10 184 2e-05 16.2 0.0 1 1 1.4e-06 6.1e-05 14.7 0.0 21 180 33 188 15 192 0.72 # 24846 # 26861 # -1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_35 - 895 Methyltransf_31 PF13847.1 152 0.0004 11.8 0.0 1 1 3.2e-05 0.0014 10.0 0.0 4 45 346 410 344 440 0.70 # 26904 # 29588 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.452 1_34 - 672 DEAD PF00270.24 169 5.1e-08 24.4 0.0 1 1 4.2e-09 1.9e-07 22.5 0.0 4 159 27 187 24 193 0.72 # 24846 # 26861 # -1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_20 - 579 DUF853 PF05872.7 504 5.9e-05 13.3 0.0 1 1 2.2e-06 9.7e-05 12.5 0.0 8 60 175 228 169 256 0.85 # 15302 # 17038 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_20 - 579 TrwB_AAD_bind PF10412.4 386 6.5e-15 46.3 0.0 1 2 5.8e-08 1.3e-06 19.0 0.0 11 52 185 226 181 233 0.93 # 15302 # 17038 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_20 - 579 TrwB_AAD_bind PF10412.4 386 6.5e-15 46.3 0.0 2 2 8.5e-10 1.9e-08 25.0 0.0 190 379 346 537 328 543 0.73 # 15302 # 17038 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_8 - 913 TrwB_AAD_bind PF10412.4 386 0.0002 11.8 0.0 1 2 0.0013 0.029 4.7 0.0 16 33 533 550 526 565 0.72 # 4515 # 7253 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_8 - 913 TrwB_AAD_bind PF10412.4 386 0.0002 11.8 0.0 2 2 0.0013 0.029 4.7 0.0 243 318 748 824 737 830 0.85 # 4515 # 7253 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_20 - 579 T4SS-DNA_transf PF02534.9 469 9e-15 45.8 1.5 1 3 0.00072 0.033 4.4 0.0 93 125 140 171 127 184 0.78 # 15302 # 17038 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_20 - 579 T4SS-DNA_transf PF02534.9 469 9e-15 45.8 1.5 2 3 4.9e-06 0.00022 11.6 0.0 43 84 186 231 172 268 0.78 # 15302 # 17038 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_20 - 579 T4SS-DNA_transf PF02534.9 469 9e-15 45.8 1.5 3 3 7e-11 3.2e-09 27.6 0.2 242 436 338 535 334 567 0.80 # 15302 # 17038 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_29 - 206 AAA_24 PF13479.1 213 3.6e-06 18.4 0.2 1 1 1.2e-07 5.4e-06 17.9 0.2 12 88 11 94 3 98 0.83 # 22056 # 22673 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_3 - 152 TIGR00922 TIGR00922 172 7.9e-06 17.3 0.0 1 1 2.2e-07 1e-05 16.9 0.0 32 102 26 98 4 115 0.76 # 2407 # 2862 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_9 - 237 ABC_tran_2 PF12848.2 85 0.0012 10.5 15.6 1 3 0.00028 0.013 7.2 2.4 20 72 41 92 30 99 0.68 # 7272 # 7982 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.481 1_9 - 237 ABC_tran_2 PF12848.2 85 0.0012 10.5 15.6 2 3 3.6e-05 0.0016 10.1 0.3 13 68 129 184 128 195 0.91 # 7272 # 7982 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.481 1_9 - 237 ABC_tran_2 PF12848.2 85 0.0012 10.5 15.6 3 3 0.017 0.77 1.5 1.0 53 69 200 216 189 234 0.67 # 7272 # 7982 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.481 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0d7bf9bf-f223-4029-aa03-fd2ccf3a20fc # Target file: checkm_output/bins/pm2045/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2045/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0d7bf9bf-f223-4029-aa03-fd2ccf3a20fc checkm_output/bins/pm2045/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:03:04 2020 # [ok]