# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_15 - 188 Methyltransf_12 PF08242.7 99 1.4e-05 18.8 0.0 1 1 2e-07 2.5e-05 18.0 0.0 1 99 55 144 55 144 0.86 # 10650 # 11213 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 4_6 - 228 UPF0020 PF01170.13 180 9e-06 18.6 0.0 1 2 0.00033 0.021 7.6 0.0 104 119 18 33 7 88 0.73 # 4242 # 4925 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 4_6 - 228 UPF0020 PF01170.13 180 9e-06 18.6 0.0 2 2 0.00012 0.0079 9.0 0.0 28 54 163 189 158 221 0.67 # 4242 # 4925 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 4_15 - 188 UPF0020 PF01170.13 180 0.0013 11.5 0.0 1 1 7.6e-05 0.0049 9.7 0.0 19 43 41 65 35 130 0.78 # 10650 # 11213 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 4_15 - 188 RrnaAD PF00398.15 262 2.7e-08 26.4 0.0 1 1 2.7e-10 3.4e-08 26.0 0.0 9 113 29 128 24 148 0.87 # 10650 # 11213 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 3_5 - 195 Seryl_tRNA_N PF02403.17 108 0.00068 12.9 3.8 1 2 0.00023 0.029 7.7 0.5 56 103 2 49 1 54 0.74 # 3260 # 3844 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 3_5 - 195 Seryl_tRNA_N PF02403.17 108 0.00068 12.9 3.8 2 2 0.0006 0.077 6.3 0.2 48 102 61 114 53 115 0.77 # 3260 # 3844 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 5_8 - 176 SSB PF00436.20 104 3e-41 132.8 0.4 1 1 3.4e-43 4.3e-41 132.3 0.4 1 101 6 109 6 112 0.96 # 4473 # 5000 # -1 # ID=5_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 4_15 - 188 Methyltransf_18 PF12847.2 112 3.8e-10 33.6 0.0 1 1 6.3e-12 8e-10 32.6 0.0 4 109 53 146 50 148 0.89 # 10650 # 11213 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_7 - 1757 UvrD_C_2 PF13538.1 104 1.4e-07 24.9 1.0 1 2 0.013 1.7 2.2 0.0 6 44 1227 1265 1223 1294 0.75 # 3721 # 8991 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 UvrD_C_2 PF13538.1 104 1.4e-07 24.9 1.0 2 2 3.6e-08 4.6e-06 20.0 0.2 3 102 1341 1444 1339 1446 0.76 # 3721 # 8991 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_29 - 876 DUF87 PF01935.12 229 3e-07 23.7 0.0 1 1 6.7e-09 8.5e-07 22.2 0.0 26 221 482 668 468 676 0.75 # 26537 # 29164 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 2_14 - 519 AAA_22 PF13401.1 131 6.1e-07 22.9 0.0 1 2 8.5e-05 0.011 9.2 0.0 6 27 38 59 34 90 0.84 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 AAA_22 PF13401.1 131 6.1e-07 22.9 0.0 2 2 2.3e-05 0.0029 11.0 0.1 69 121 209 265 164 274 0.75 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 MutS_V PF00488.16 235 2e-05 17.3 1.1 1 2 3.2e-05 0.004 9.8 0.1 37 67 32 60 6 63 0.78 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 MutS_V PF00488.16 235 2e-05 17.3 1.1 2 2 0.00069 0.088 5.4 0.1 117 177 222 281 209 301 0.73 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 AAA_15 PF13175.1 415 7.2e-15 48.1 18.8 1 2 6.4e-10 8.2e-08 24.9 0.2 2 47 15 61 14 109 0.84 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 AAA_15 PF13175.1 415 7.2e-15 48.1 18.8 2 2 5.1e-11 6.5e-09 28.5 10.2 286 411 149 269 136 273 0.72 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 3_7 - 683 N6_N4_Mtase PF01555.13 231 5.5e-57 186.1 0.0 1 1 2.9e-58 1.8e-56 184.4 0.0 1 228 196 541 196 544 0.90 # 6528 # 8576 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 4_6 - 228 N6_N4_Mtase PF01555.13 231 8.4e-37 120.1 0.0 1 2 2.6e-15 1.7e-13 43.8 0.0 1 114 21 124 21 133 0.89 # 4242 # 4925 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 4_6 - 228 N6_N4_Mtase PF01555.13 231 8.4e-37 120.1 0.0 2 2 1.1e-24 6.9e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 4242 # 4925 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_8 - 742 AAA_17 PF13207.1 121 0.00042 14.4 0.0 1 1 2.4e-05 0.0015 12.6 0.0 3 27 189 217 187 262 0.68 # 8991 # 11216 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_14 - 519 AAA_17 PF13207.1 121 0.00055 14.0 0.0 1 1 3.8e-05 0.0024 12.0 0.0 3 25 40 66 39 136 0.84 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 AAA_21 PF13304.1 303 4.7e-24 79.0 10.5 1 1 1.5e-24 9.7e-23 74.7 7.3 1 297 38 268 38 272 0.66 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_11 - 713 AAA_21 PF13304.1 303 2.2e-08 27.6 0.2 1 2 1.4e-05 0.00091 12.5 0.0 7 69 29 104 27 211 0.64 # 6847 # 8985 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 2_11 - 713 AAA_21 PF13304.1 303 2.2e-08 27.6 0.2 2 2 1.3e-05 0.00084 12.6 0.1 219 298 386 487 302 489 0.75 # 6847 # 8985 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 1_29 - 876 MobB PF03205.9 140 0.00086 12.3 0.1 1 1 2.7e-05 0.0034 10.3 0.0 4 37 483 515 481 523 0.79 # 26537 # 29164 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_38 - 122 CTP_transf_2 PF01467.21 157 0.00029 14.2 0.0 1 1 2.5e-06 0.00032 14.0 0.0 31 112 6 87 1 100 0.74 # 34275 # 34640 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_8 - 742 Zeta_toxin PF06414.7 201 0.001 11.4 0.0 1 1 3.5e-05 0.0045 9.3 0.0 21 49 190 219 182 236 0.85 # 8991 # 11216 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_14 - 519 SMC_N PF02463.14 220 4e-15 48.8 4.4 1 2 7.1e-10 4.5e-08 25.8 0.2 2 45 14 57 13 61 0.92 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 SMC_N PF02463.14 220 4e-15 48.8 4.4 2 2 2.3e-09 1.5e-07 24.1 0.2 135 208 176 279 126 289 0.69 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_11 - 713 SMC_N PF02463.14 220 0.00028 13.4 0.0 1 2 0.00097 0.062 5.7 0.0 5 45 3 42 1 50 0.78 # 6847 # 8985 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 2_11 - 713 SMC_N PF02463.14 220 0.00028 13.4 0.0 2 2 0.001 0.066 5.6 0.0 135 186 243 470 100 500 0.73 # 6847 # 8985 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 2_14 - 519 Arch_ATPase PF01637.13 234 1.5e-07 24.6 0.5 1 2 1.2e-05 0.0015 11.5 0.0 7 41 24 57 19 71 0.87 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 Arch_ATPase PF01637.13 234 1.5e-07 24.6 0.5 2 2 2.1e-05 0.0027 10.7 0.3 103 163 212 267 144 284 0.87 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 1_8 - 742 AAA_16 PF13191.1 185 5.6e-06 19.7 0.0 1 1 4.1e-07 2.6e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 8991 # 11216 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_14 - 519 AAA_16 PF13191.1 185 0.00031 14.0 0.0 1 2 7.9e-05 0.0051 10.0 0.0 27 46 39 58 34 67 0.87 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 AAA_16 PF13191.1 185 0.00031 14.0 0.0 2 2 0.038 2.4 1.3 0.0 138 166 215 243 187 274 0.74 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 AAA_23 PF13476.1 202 1.8e-12 41.2 1.7 1 1 1e-13 6.5e-12 39.4 1.6 1 190 16 252 16 402 0.71 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_11 - 713 AAA_23 PF13476.1 202 3.2e-08 27.3 0.5 1 1 1.7e-09 1.1e-07 25.7 0.5 2 177 3 268 2 385 0.68 # 6847 # 8985 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 2_11 - 713 AAA_13 PF13166.1 712 1.1e-26 86.7 0.0 1 3 2.5e-11 1.6e-09 30.0 0.0 15 125 20 147 10 163 0.76 # 6847 # 8985 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 2_11 - 713 AAA_13 PF13166.1 712 1.1e-26 86.7 0.0 2 3 7.5e-06 0.00048 11.9 0.0 240 390 195 383 187 387 0.60 # 6847 # 8985 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 2_11 - 713 AAA_13 PF13166.1 712 1.1e-26 86.7 0.0 3 3 4.9e-15 3.1e-13 42.2 0.0 461 572 376 489 309 509 0.77 # 6847 # 8985 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 3_5 - 195 AAA_13 PF13166.1 712 0.00041 12.1 2.2 1 1 7.5e-06 0.00048 11.9 2.2 284 382 7 105 1 118 0.63 # 3260 # 3844 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 4_15 - 188 Methyltransf_25 PF13649.1 101 0.00015 15.4 0.0 1 1 1.7e-06 0.00021 14.9 0.0 1 101 54 142 54 142 0.81 # 10650 # 11213 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_14 - 519 AAA_14 PF13173.1 128 6.5e-06 19.3 0.0 1 2 0.00017 0.022 8.0 0.0 5 27 39 61 36 78 0.84 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 AAA_14 PF13173.1 128 6.5e-06 19.3 0.0 2 2 0.00015 0.019 8.1 0.1 50 102 218 273 172 298 0.68 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 AAA_29 PF13555.1 62 1.8e-10 33.6 0.1 1 2 6.8e-11 8.7e-09 28.1 0.0 15 51 29 64 14 67 0.82 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 AAA_29 PF13555.1 62 1.8e-10 33.6 0.1 2 2 0.0066 0.84 2.5 0.1 25 41 356 372 343 375 0.83 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 AAA PF00004.24 132 1.4e-07 25.0 0.2 1 2 0.00013 0.017 8.6 0.0 3 21 41 59 39 104 0.80 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 AAA PF00004.24 132 1.4e-07 25.0 0.2 2 2 3.8e-06 0.00048 13.6 0.2 39 114 208 274 174 288 0.80 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 1_8 - 742 TraG-D_C PF12696.2 128 1e-20 67.2 0.0 1 1 1.4e-22 1.8e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 8991 # 11216 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_14 - 519 NTPase_1 PF03266.10 168 6.6e-05 15.9 0.3 1 2 0.00042 0.054 6.4 0.0 4 22 41 59 39 72 0.83 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 NTPase_1 PF03266.10 168 6.6e-05 15.9 0.3 2 2 0.00034 0.044 6.7 0.4 86 147 219 282 204 295 0.77 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 4_15 - 188 Methyltransf_26 PF13659.1 117 3.4e-14 46.2 0.0 1 1 1.3e-15 5.8e-14 45.4 0.0 2 114 52 147 51 150 0.91 # 10650 # 11213 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 4_6 - 228 Methyltransf_26 PF13659.1 117 1.8e-12 40.6 0.1 1 2 1.1e-07 4.5e-06 20.0 0.0 54 114 4 71 2 74 0.73 # 4242 # 4925 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 4_6 - 228 Methyltransf_26 PF13659.1 117 1.8e-12 40.6 0.1 2 2 2.9e-07 1.2e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 4242 # 4925 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 3_7 - 683 Methyltransf_26 PF13659.1 117 0.00028 14.2 0.0 1 2 0.01 0.43 3.9 0.0 68 111 193 244 136 249 0.81 # 6528 # 8576 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 3_7 - 683 Methyltransf_26 PF13659.1 117 0.00028 14.2 0.0 2 2 0.00057 0.024 7.9 0.0 1 31 505 534 505 623 0.89 # 6528 # 8576 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 10_2 - 252 FmrO PF07091.6 251 2.7e-82 268.7 0.0 1 1 2.4e-84 3.1e-82 268.5 0.0 1 251 12 246 12 246 0.98 # 190 # 945 # -1 # ID=10_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_7 - 1757 AAA_30 PF13604.1 196 8.9e-45 145.9 12.8 1 2 1.7e-05 0.00071 12.4 2.6 7 142 420 547 416 571 0.81 # 3721 # 8991 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 AAA_30 PF13604.1 196 8.9e-45 145.9 12.8 2 2 9.6e-44 4.1e-42 137.2 1.2 1 186 968 1156 968 1162 0.93 # 3721 # 8991 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 2_14 - 519 AAA_30 PF13604.1 196 0.0006 12.7 0.0 1 1 3.6e-05 0.0015 11.3 0.0 12 44 30 62 26 76 0.85 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 1_8 - 742 AAA_30 PF13604.1 196 0.00076 12.3 0.0 1 1 3.9e-05 0.0017 11.2 0.0 21 57 188 224 180 230 0.85 # 8991 # 11216 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_29 - 876 FtsK_SpoIIIE PF01580.13 205 2.2e-05 17.2 0.2 1 2 4.1e-06 0.00026 13.7 0.0 39 63 476 504 463 507 0.84 # 26537 # 29164 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_29 - 876 FtsK_SpoIIIE PF01580.13 205 2.2e-05 17.2 0.2 2 2 0.036 2.3 0.9 0.0 75 166 530 625 529 634 0.75 # 26537 # 29164 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 2_14 - 519 FtsK_SpoIIIE PF01580.13 205 0.00029 13.6 0.0 1 1 1e-05 0.00065 12.4 0.0 36 58 34 56 15 63 0.82 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 4_15 - 188 MTS PF05175.9 170 1.1e-09 31.1 0.0 1 1 1.2e-11 1.5e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 10650 # 11213 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 4_15 - 188 Methyltrans_SAM PF10672.4 286 0.0012 11.0 0.0 1 1 1.3e-05 0.0017 10.5 0.0 196 261 113 173 100 180 0.78 # 10650 # 11213 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 4_15 - 188 Met_10 PF02475.11 200 0.00057 12.7 0.0 1 1 5.7e-06 0.00073 12.4 0.0 98 189 47 132 29 145 0.79 # 10650 # 11213 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_14 - 519 ABC_tran PF00005.22 137 2e-11 37.6 0.3 1 1 1.4e-11 5.8e-10 32.9 0.3 8 134 33 235 29 237 0.52 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_11 - 713 ABC_tran PF00005.22 137 4e-07 23.7 0.5 1 2 0.001 0.044 7.3 1.2 19 37 29 47 16 175 0.65 # 6847 # 8985 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 2_11 - 713 ABC_tran PF00005.22 137 4e-07 23.7 0.5 2 2 4.6e-05 0.002 11.7 0.0 87 136 398 452 283 453 0.74 # 6847 # 8985 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 1_29 - 876 ABC_tran PF00005.22 137 0.0013 12.3 0.0 1 1 8.7e-05 0.0037 10.8 0.0 13 102 481 610 476 619 0.60 # 26537 # 29164 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 4_6 - 228 Cons_hypoth95 PF03602.10 183 1.3e-05 17.9 0.0 1 2 0.00063 0.04 6.5 0.0 113 146 19 54 5 81 0.66 # 4242 # 4925 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 4_6 - 228 Cons_hypoth95 PF03602.10 183 1.3e-05 17.9 0.0 2 2 8e-05 0.0051 9.4 0.0 41 62 162 183 145 218 0.78 # 4242 # 4925 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 3_7 - 683 Cons_hypoth95 PF03602.10 183 0.00011 14.9 0.0 1 1 6.2e-06 0.0004 13.1 0.0 77 141 158 222 143 249 0.73 # 6528 # 8576 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 1_7 - 1757 AAA_19 PF13245.1 76 6.2e-08 25.6 1.3 1 1 5.5e-09 3.5e-07 23.2 0.3 5 76 979 1047 974 1047 0.74 # 3721 # 8991 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 2_14 - 519 AAA_19 PF13245.1 76 1.6e-05 17.9 0.0 1 1 5.6e-07 3.6e-05 16.8 0.0 9 37 35 62 30 74 0.85 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 1_29 - 876 AAA_10 PF12846.2 304 1.8e-49 162.0 0.0 1 1 7e-51 3e-49 161.3 0.0 1 294 479 768 479 774 0.89 # 26537 # 29164 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_8 - 742 AAA_10 PF12846.2 304 1.8e-10 33.9 0.0 1 1 7.6e-11 3.2e-09 29.8 0.0 3 296 187 494 186 500 0.68 # 8991 # 11216 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_14 - 519 AAA_10 PF12846.2 304 0.00011 14.9 0.1 1 2 5.8e-05 0.0025 10.5 0.0 3 22 38 57 36 66 0.87 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 AAA_10 PF12846.2 304 0.00011 14.9 0.1 2 2 0.027 1.1 1.7 0.0 212 262 222 269 204 277 0.83 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 3_6 - 879 ResIII PF04851.10 184 3.4e-31 101.7 0.2 1 1 2.7e-33 3.4e-31 101.7 0.2 3 182 44 244 42 246 0.90 # 3887 # 6523 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 4_15 - 188 Methyltransf_31 PF13847.1 152 7.9e-07 22.0 0.0 1 1 7.6e-09 9.8e-07 21.7 0.0 5 119 52 162 48 183 0.83 # 10650 # 11213 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 3_5 - 195 DUF3584 PF12128.3 1201 0.00028 11.5 6.1 1 1 2.8e-06 0.00035 11.2 6.1 600 688 13 107 5 113 0.73 # 3260 # 3844 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 1_7 - 1757 Viral_helicase1 PF01443.13 234 0.00029 13.6 0.1 1 2 0.00031 0.04 6.6 0.0 1 23 988 1011 988 1191 0.78 # 3721 # 8991 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 Viral_helicase1 PF01443.13 234 0.00029 13.6 0.1 2 2 0.0021 0.27 3.9 0.1 159 234 1370 1447 1341 1447 0.63 # 3721 # 8991 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 3_6 - 879 DEAD PF00270.24 169 6e-07 22.3 0.5 1 2 3.2e-08 4.1e-06 19.6 0.0 6 163 62 245 58 251 0.64 # 3887 # 6523 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 3_6 - 879 DEAD PF00270.24 169 6e-07 22.3 0.5 2 2 0.081 10 -1.2 0.0 71 119 310 358 294 363 0.66 # 3887 # 6523 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_8 - 742 TrwB_AAD_bind PF10412.4 386 3.4e-150 493.1 0.0 1 1 6.5e-152 4.2e-150 492.8 0.0 2 386 172 561 171 561 0.99 # 8991 # 11216 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_29 - 876 TrwB_AAD_bind PF10412.4 386 1.1e-06 20.7 0.3 1 1 4.8e-08 3.1e-06 19.3 0.0 15 53 479 517 470 547 0.80 # 26537 # 29164 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_7 - 1757 AAA_11 PF13086.1 236 0.00012 15.0 1.9 1 2 3.9e-06 0.00049 12.9 0.0 2 75 969 1039 968 1060 0.81 # 3721 # 8991 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 AAA_11 PF13086.1 236 0.00012 15.0 1.9 2 2 0.096 12 -1.5 1.5 62 123 1684 1744 1642 1753 0.46 # 3721 # 8991 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_8 - 742 T4SS-DNA_transf PF02534.9 469 6e-10 31.4 0.0 1 1 2.1e-11 1.3e-09 30.3 0.0 250 361 362 476 198 500 0.76 # 8991 # 11216 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_29 - 876 T4SS-DNA_transf PF02534.9 469 4.8e-06 18.6 0.1 1 2 0.00023 0.015 7.1 0.0 105 186 533 608 475 623 0.88 # 26537 # 29164 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_29 - 876 T4SS-DNA_transf PF02534.9 469 4.8e-06 18.6 0.1 2 2 5.1e-05 0.0032 9.2 0.1 319 378 711 769 665 771 0.92 # 26537 # 29164 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 4_15 - 188 TIGR00755 TIGR00755 256 9.1e-09 27.9 0.0 1 1 9.5e-11 1.2e-08 27.4 0.0 8 105 29 123 25 134 0.90 # 10650 # 11213 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 4_6 - 228 MethyltransfD12 PF02086.10 260 0.00072 12.3 0.0 1 2 0.022 2.8 0.5 0.0 178 188 21 31 14 91 0.83 # 4242 # 4925 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 4_6 - 228 MethyltransfD12 PF02086.10 260 0.00072 12.3 0.0 2 2 4e-05 0.0051 9.5 0.0 20 46 163 189 148 197 0.78 # 4242 # 4925 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_29 - 876 Pox_A32 PF04665.7 241 0.00085 11.9 0.0 1 1 1.8e-05 0.0023 10.4 0.0 6 38 472 504 469 519 0.85 # 26537 # 29164 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 4_15 - 188 Methyltransf_23 PF13489.1 161 7.8e-05 15.7 0.0 1 1 1.6e-06 0.0001 15.3 0.0 9 120 38 153 27 174 0.78 # 10650 # 11213 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 10_2 - 252 Methyltransf_23 PF13489.1 161 0.00046 13.2 0.0 1 1 1.1e-05 0.00068 12.6 0.0 7 52 89 132 82 198 0.78 # 190 # 945 # -1 # ID=10_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 3_6 - 879 UvrD-helicase PF00580.16 315 0.016 7.7 7.7 1 1 8.6e-05 0.011 8.2 4.5 15 253 72 410 58 420 0.56 # 3887 # 6523 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 2_14 - 519 NACHT PF05729.7 166 4e-06 19.8 0.0 1 2 5.3e-06 0.00068 12.6 0.0 3 40 39 77 37 91 0.77 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 NACHT PF05729.7 166 4e-06 19.8 0.0 2 2 0.0012 0.16 4.9 0.0 73 112 219 251 177 293 0.74 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 2_14 - 519 AAA_25 PF13481.1 194 0.0003 13.4 0.0 1 1 5.4e-06 0.00069 12.3 0.0 30 58 33 61 22 85 0.81 # 10449 # 12005 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 4_6 - 228 Methyltransf_15 PF09445.5 164 0.00036 13.3 0.0 1 2 0.012 1.6 1.5 0.0 53 79 4 29 2 33 0.91 # 4242 # 4925 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 4_6 - 228 Methyltransf_15 PF09445.5 164 0.00036 13.3 0.0 2 2 4.2e-05 0.0054 9.5 0.0 3 31 166 194 164 209 0.86 # 4242 # 4925 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/538409da-b4a0-4bba-9b78-c9b5c7996b13 # Target file: checkm_output/bins/pm203/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm203/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/538409da-b4a0-4bba-9b78-c9b5c7996b13 checkm_output/bins/pm203/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:57 2020 # [ok]