# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 372 AAA_15 PF13175.1 415 1.2e-21 65.4 35.9 1 2 4.6e-12 1.8e-11 31.9 18.0 1 226 2 204 2 206 0.58 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 AAA_15 PF13175.1 415 1.2e-21 65.4 35.9 2 2 2.7e-12 1.1e-11 32.7 23.1 239 411 146 319 122 323 0.75 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 AAA_21 PF13304.1 303 3.3e-25 77.9 15.6 1 2 8.3e-26 3.3e-25 77.9 15.6 1 301 24 322 24 324 0.69 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 AAA_21 PF13304.1 303 3.3e-25 77.9 15.6 2 2 0.033 0.13 0.4 0.1 105 147 326 368 323 371 0.85 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 SMC_N PF02463.14 220 4.5e-09 24.2 18.6 1 1 1e-08 4.1e-08 21.0 18.6 1 207 1 328 1 334 0.77 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 AAA_23 PF13476.1 202 1.9e-10 29.7 27.3 1 1 2.6e-09 1.1e-08 24.0 27.3 2 194 5 230 4 354 0.66 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 AAA_29 PF13555.1 62 1.8e-05 12.7 0.0 1 1 9.1e-06 3.7e-05 11.7 0.0 23 43 22 42 2 45 0.71 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 DUF2813 PF11398.3 373 1.7e-07 18.9 2.0 1 2 6.4e-08 2.6e-07 18.3 0.2 4 70 3 70 1 127 0.82 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 DUF2813 PF11398.3 373 1.7e-07 18.9 2.0 2 2 0.057 0.23 -1.3 0.1 183 240 151 208 125 236 0.56 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 ABC_tran PF00005.22 137 3.3e-05 12.6 6.6 1 1 8.6e-05 0.00034 9.3 3.9 14 80 25 118 15 288 0.65 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 Mannitol_dh PF01232.18 151 0.0017 6.7 9.4 1 3 0.0043 0.017 3.4 0.5 37 128 100 192 53 197 0.82 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 Mannitol_dh PF01232.18 151 0.0017 6.7 9.4 2 3 4.7e-05 0.00019 9.8 1.0 33 105 169 240 157 248 0.88 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 Mannitol_dh PF01232.18 151 0.0017 6.7 9.4 3 3 0.022 0.089 1.1 0.2 47 81 306 336 254 344 0.56 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/10c2c5eb-cf03-447a-a18f-70b6259e9e88 # Target file: checkm_output/bins/pm2028/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2028/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/10c2c5eb-cf03-447a-a18f-70b6259e9e88 checkm_output/bins/pm2028/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:52 2020 # [ok]