# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_12 - 188 Methyltransf_12 PF08242.7 99 1.5e-05 18.1 0.0 1 1 3.1e-07 2.7e-05 17.3 0.0 1 99 55 144 55 144 0.87 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 3_3 - 228 UPF0020 PF01170.13 180 1e-05 17.9 0.0 1 2 0.00052 0.023 7.0 0.0 103 123 17 37 4 88 0.71 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_3 - 228 UPF0020 PF01170.13 180 1e-05 17.9 0.0 2 2 0.00013 0.0056 9.0 0.0 28 54 163 189 158 221 0.67 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_12 - 188 UPF0020 PF01170.13 180 0.00076 11.8 0.0 1 1 5.8e-05 0.0026 10.1 0.0 18 43 40 65 32 130 0.71 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 3_12 - 188 RrnaAD PF00398.15 262 9.8e-09 27.3 0.0 1 1 1.4e-10 1.2e-08 26.9 0.0 9 113 29 128 24 148 0.87 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 6_3 - 176 SSB PF00436.20 104 2.1e-41 132.8 0.4 1 1 3.4e-43 3e-41 132.3 0.4 1 101 6 109 6 112 0.96 # 2066 # 2593 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_12 - 188 Methyltransf_18 PF12847.2 112 1.6e-10 34.3 0.0 1 1 3.9e-12 3.4e-10 33.3 0.0 4 109 53 146 50 148 0.90 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_19 - 1757 UvrD_C_2 PF13538.1 104 1.1e-07 24.7 0.7 1 2 0.013 1.1 2.2 0.0 6 44 1227 1265 1223 1295 0.74 # 16435 # 21705 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_19 - 1757 UvrD_C_2 PF13538.1 104 1.1e-07 24.7 0.7 2 2 5.2e-08 4.6e-06 19.5 0.2 3 102 1341 1444 1339 1446 0.77 # 16435 # 21705 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 2_6 - 877 DUF87 PF01935.12 229 2e-07 23.7 0.0 1 1 6.9e-09 6.1e-07 22.2 0.0 26 222 483 670 469 677 0.77 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_3 - 228 Methyltransf_11 PF08241.7 95 0.0008 12.7 0.0 1 2 0.0024 0.22 4.9 0.0 78 93 53 68 48 70 0.84 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_3 - 228 Methyltransf_11 PF08241.7 95 0.0008 12.7 0.0 2 2 0.002 0.18 5.1 0.0 5 54 172 220 168 226 0.82 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_3 - 228 N6_N4_Mtase PF01555.13 231 6.4e-37 119.9 0.0 1 1 2.9e-36 2.5e-34 111.4 0.0 1 227 21 199 21 203 0.91 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_18 - 682 AAA_17 PF13207.1 121 0.00024 14.7 0.0 1 1 1.1e-05 0.00095 12.7 0.0 3 27 135 163 133 208 0.68 # 14390 # 16435 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 2_6 - 877 MobB PF03205.9 140 0.00065 12.2 0.1 1 1 5.4e-05 0.0024 10.3 0.0 4 37 484 516 482 524 0.79 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_18 - 682 MobB PF03205.9 140 0.0008 11.9 0.0 1 1 4.8e-05 0.0021 10.5 0.0 7 34 138 165 134 171 0.89 # 14390 # 16435 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_18 - 682 Zeta_toxin PF06414.7 201 0.00062 11.6 0.0 1 1 3.2e-05 0.0028 9.5 0.0 21 49 136 165 128 182 0.85 # 14390 # 16435 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_18 - 682 AAA_16 PF13191.1 185 3e-06 20.0 0.0 1 1 3.6e-07 1.6e-05 17.7 0.0 21 60 128 168 125 210 0.81 # 14390 # 16435 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 2_12 - 123 AAA_16 PF13191.1 185 0.0012 11.6 0.1 1 1 4.6e-05 0.002 10.8 0.1 22 48 86 112 80 119 0.88 # 7892 # 8260 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 3_12 - 188 Methyltransf_25 PF13649.1 101 0.00011 15.3 0.0 1 1 1.8e-06 0.00016 14.8 0.0 1 101 54 142 54 142 0.81 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 4_1 - 139 Ribosomal_S8 PF00410.14 129 0.0012 11.5 1.8 1 2 0.0059 0.52 2.9 0.1 41 73 2 29 1 35 0.56 # 78 # 494 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 4_1 - 139 Ribosomal_S8 PF00410.14 129 0.0012 11.5 1.8 2 2 0.00012 0.011 8.4 0.1 50 87 90 128 50 135 0.79 # 78 # 494 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_18 - 682 TraG-D_C PF12696.2 128 6.2e-21 67.4 0.0 1 1 1.2e-22 1.1e-20 66.6 0.0 1 127 365 487 365 488 0.86 # 14390 # 16435 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 2_12 - 123 KTI12 PF08433.5 270 0.00074 11.4 0.1 1 1 1.4e-05 0.0013 10.7 0.1 5 30 92 117 91 120 0.87 # 7892 # 8260 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 3_12 - 188 Methyltransf_26 PF13659.1 117 4.1e-14 45.4 0.0 1 1 1.6e-15 7e-14 44.6 0.0 2 114 52 147 51 150 0.90 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 3_3 - 228 Methyltransf_26 PF13659.1 117 7.5e-12 38.1 0.1 1 2 3e-07 1.3e-05 17.9 0.0 57 114 7 71 2 74 0.72 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_3 - 228 Methyltransf_26 PF13659.1 117 7.5e-12 38.1 0.1 2 2 2.5e-07 1.1e-05 18.2 0.0 4 44 167 206 164 221 0.80 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_19 - 1757 AAA_30 PF13604.1 196 1.5e-44 144.6 15.6 1 3 0.04 1.8 0.8 0.0 41 86 223 269 218 282 0.84 # 16435 # 21705 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_19 - 1757 AAA_30 PF13604.1 196 1.5e-44 144.6 15.6 2 3 1.9e-05 0.00084 11.6 3.9 7 146 420 551 416 561 0.81 # 16435 # 21705 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_19 - 1757 AAA_30 PF13604.1 196 1.5e-44 144.6 15.6 3 3 9.9e-44 4.3e-42 136.6 1.9 1 186 968 1156 968 1162 0.94 # 16435 # 21705 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_18 - 682 AAA_30 PF13604.1 196 0.00048 12.4 0.0 1 1 2.4e-05 0.001 11.3 0.0 21 57 134 170 126 176 0.85 # 14390 # 16435 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 2_6 - 877 FtsK_SpoIIIE PF01580.13 205 1.3e-05 17.5 0.1 1 2 2e-06 0.00018 13.7 0.0 39 63 477 505 464 508 0.84 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_6 - 877 FtsK_SpoIIIE PF01580.13 205 1.3e-05 17.5 0.1 2 2 0.015 1.3 1.1 0.0 75 166 531 626 530 669 0.82 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_12 - 188 MTS PF05175.9 170 7.6e-10 31.1 0.0 1 1 1.2e-11 1e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 3_12 - 188 Methyltrans_SAM PF10672.4 286 0.00064 11.3 0.0 1 1 9.9e-06 0.00087 10.9 0.0 196 261 113 173 93 180 0.78 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 3_12 - 188 Met_10 PF02475.11 200 0.00077 11.8 0.0 1 1 1.1e-05 0.00098 11.4 0.0 98 189 47 132 29 145 0.78 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 3_3 - 228 Cons_hypoth95 PF03602.10 183 1.3e-05 17.3 0.0 1 2 0.00039 0.034 6.2 0.0 112 146 18 54 9 81 0.65 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_3 - 228 Cons_hypoth95 PF03602.10 183 1.3e-05 17.3 0.0 2 2 4.8e-05 0.0042 9.2 0.0 41 62 162 183 145 218 0.82 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_19 - 1757 AAA_19 PF13245.1 76 1.6e-07 23.8 2.0 1 1 1.1e-08 4.9e-07 22.2 0.5 7 76 981 1047 974 1047 0.74 # 16435 # 21705 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 2_12 - 123 AAA_19 PF13245.1 76 0.00059 12.3 0.0 1 1 2.2e-05 0.00095 11.7 0.0 13 37 91 115 82 122 0.78 # 7892 # 8260 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 2_6 - 877 AAA_10 PF12846.2 304 3.6e-49 160.5 0.0 1 1 1.5e-50 6.5e-49 159.6 0.0 1 294 480 769 480 775 0.89 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_18 - 682 AAA_10 PF12846.2 304 1e-10 34.2 0.0 1 1 5.1e-11 2.2e-09 29.8 0.0 3 296 133 440 132 446 0.68 # 14390 # 16435 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 3_12 - 188 Methyltransf_31 PF13847.1 152 3e-07 22.9 0.0 1 1 4.2e-09 3.7e-07 22.6 0.0 5 119 52 162 48 183 0.84 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_19 - 1757 Viral_helicase1 PF01443.13 234 0.00034 12.9 0.0 1 2 0.00014 0.012 7.8 0.0 1 118 988 1121 988 1212 0.52 # 16435 # 21705 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_19 - 1757 Viral_helicase1 PF01443.13 234 0.00034 12.9 0.0 2 2 0.0066 0.58 2.3 0.0 171 234 1387 1447 1342 1447 0.63 # 16435 # 21705 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_18 - 682 TrwB_AAD_bind PF10412.4 386 2.6e-150 493.0 0.0 1 1 7.3e-152 3.2e-150 492.7 0.0 2 386 118 507 117 507 0.99 # 14390 # 16435 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 2_6 - 877 TrwB_AAD_bind PF10412.4 386 4.7e-07 21.4 0.2 1 2 4.8e-08 2.1e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_6 - 877 TrwB_AAD_bind PF10412.4 386 4.7e-07 21.4 0.2 2 2 0.054 2.4 -0.7 0.1 261 317 714 770 706 773 0.92 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_19 - 1757 AAA_11 PF13086.1 236 0.00018 13.8 0.0 1 1 2.1e-06 0.00018 13.8 0.0 2 75 969 1039 968 1059 0.81 # 16435 # 21705 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_18 - 682 T4SS-DNA_transf PF02534.9 469 5.3e-10 31.1 0.0 1 1 3.3e-11 1.4e-09 29.7 0.0 264 361 328 422 144 446 0.82 # 14390 # 16435 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 2_6 - 877 T4SS-DNA_transf PF02534.9 469 0.00028 12.2 0.0 1 2 0.0047 0.21 2.8 0.0 105 182 534 605 471 624 0.82 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_6 - 877 T4SS-DNA_transf PF02534.9 469 0.00028 12.2 0.0 2 2 0.00023 0.01 7.1 0.0 319 378 712 770 663 772 0.91 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_12 - 188 TIGR00755 TIGR00755 256 3.2e-09 28.8 0.0 1 1 4.9e-11 4.3e-09 28.4 0.0 8 105 29 123 25 134 0.91 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 3_3 - 228 MethyltransfD12 PF02086.10 260 0.00034 12.8 0.0 1 2 0.015 1.3 1.0 0.0 175 188 18 31 8 92 0.82 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_3 - 228 MethyltransfD12 PF02086.10 260 0.00034 12.8 0.0 2 2 3.4e-05 0.003 9.7 0.0 20 46 163 189 148 214 0.81 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 2_6 - 877 Pox_A32 PF04665.7 241 0.00065 11.7 0.1 1 1 2.3e-05 0.002 10.1 0.0 7 38 474 505 470 520 0.85 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_3 - 228 Methyltransf_15 PF09445.5 164 0.00061 12.1 0.0 1 2 0.042 3.7 -0.2 0.0 53 79 4 29 2 33 0.90 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_3 - 228 Methyltransf_15 PF09445.5 164 0.00061 12.1 0.0 2 2 3.9e-05 0.0034 9.7 0.0 3 32 166 195 164 209 0.85 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1bb9d2fc-adb2-4d3b-b01f-d7ca218b2940 # Target file: checkm_output/bins/pm2024/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2024/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1bb9d2fc-adb2-4d3b-b01f-d7ca218b2940 checkm_output/bins/pm2024/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:52 2020 # [ok]