# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_12 - 228 UPF0020 PF01170.13 180 2.3e-05 17.9 0.0 1 2 0.00052 0.049 7.0 0.0 103 123 17 37 4 88 0.71 # 7268 # 7951 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_12 - 228 UPF0020 PF01170.13 180 2.3e-05 17.9 0.0 2 2 0.00013 0.012 9.0 0.0 28 54 163 189 158 221 0.67 # 7268 # 7951 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 8_6 - 228 UPF0020 PF01170.13 180 3.1e-05 17.4 0.0 1 2 0.00099 0.094 6.1 0.0 103 117 17 31 4 72 0.83 # 3128 # 3811 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 8_6 - 228 UPF0020 PF01170.13 180 3.1e-05 17.4 0.0 2 2 9.4e-05 0.0089 9.4 0.0 28 54 163 189 158 223 0.65 # 3128 # 3811 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 4_10 - 707 ABC_ATPase PF09818.4 448 0.00037 12.9 0.2 1 2 0.00092 0.18 4.1 0.0 241 265 491 516 477 523 0.90 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 4_10 - 707 ABC_ATPase PF09818.4 448 0.00037 12.9 0.2 2 2 0.00018 0.034 6.5 0.0 304 366 586 652 574 681 0.71 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_11 - 503 Rad17 PF03215.10 519 0.0023 10.4 0.0 1 1 1.8e-05 0.0035 9.8 0.0 42 69 226 253 217 264 0.81 # 9128 # 10636 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_18 - 209 MipZ PF09140.6 261 3.5e-21 69.2 0.5 1 2 1.2e-12 2.3e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_18 - 209 MipZ PF09140.6 261 3.5e-21 69.2 0.5 2 2 1.6e-12 3e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_18 - 209 YhjQ PF06564.7 244 4.5e-05 16.7 0.3 1 2 1.8e-06 0.00034 13.8 0.3 4 38 3 37 1 50 0.89 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_18 - 209 YhjQ PF06564.7 244 4.5e-05 16.7 0.3 2 2 0.029 5.6 0.0 0.0 108 144 69 103 44 113 0.78 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_5 - 176 SSB PF00436.20 104 1.2e-40 131.4 0.4 1 1 8.6e-43 1.6e-40 131.0 0.4 1 101 6 109 6 112 0.96 # 2984 # 3511 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 4_10 - 707 DUF87 PF01935.12 229 0.00049 13.8 0.1 1 1 7.7e-06 0.00049 13.8 0.1 26 61 498 531 481 532 0.80 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_54 - 711 DUF87 PF01935.12 229 0.00083 13.0 0.1 1 1 6.9e-05 0.0044 10.6 0.0 16 40 130 153 120 168 0.80 # 48390 # 50522 # 1 # ID=1_54;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_21 - 383 DUF87 PF01935.12 229 0.0011 12.7 0.0 1 1 3.2e-05 0.002 11.8 0.0 28 46 162 180 161 192 0.87 # 18858 # 20006 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_21 - 383 NB-ARC PF00931.17 287 0.00057 12.6 0.0 1 2 9.7e-06 0.0019 10.9 0.0 18 49 156 185 145 192 0.81 # 18858 # 20006 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_21 - 383 NB-ARC PF00931.17 287 0.00057 12.6 0.0 2 2 0.069 13 -1.7 0.0 208 236 331 357 326 367 0.70 # 18858 # 20006 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_21 - 383 AAA_22 PF13401.1 131 7.1e-06 20.0 0.0 1 1 2.3e-07 1.5e-05 19.0 0.0 3 48 156 198 153 233 0.77 # 18858 # 20006 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_11 - 503 AAA_22 PF13401.1 131 1e-05 19.5 0.0 1 1 3e-07 1.9e-05 18.6 0.0 4 49 229 281 225 330 0.84 # 9128 # 10636 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 4_10 - 707 AAA_22 PF13401.1 131 6.6e-05 16.9 0.3 1 1 6.9e-06 0.00044 14.2 0.3 7 106 498 642 492 667 0.66 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 8_6 - 228 Methyltransf_11 PF08241.7 95 0.001 13.4 0.0 1 2 0.011 1.1 3.7 0.0 79 93 54 68 46 70 0.83 # 3128 # 3811 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 8_6 - 228 Methyltransf_11 PF08241.7 95 0.001 13.4 0.0 2 2 0.00096 0.092 7.1 0.0 5 58 172 224 168 227 0.86 # 3128 # 3811 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_12 - 228 Methyltransf_11 PF08241.7 95 0.0017 12.7 0.0 1 2 0.0049 0.47 4.9 0.0 78 93 53 68 48 70 0.84 # 7268 # 7951 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_12 - 228 Methyltransf_11 PF08241.7 95 0.0017 12.7 0.0 2 2 0.0041 0.39 5.1 0.0 5 54 172 220 168 226 0.82 # 7268 # 7951 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_18 - 209 SRP54 PF00448.17 196 4.7e-07 23.2 0.1 1 1 1.5e-08 2.9e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_12 - 228 N6_N4_Mtase PF01555.13 231 1.4e-36 119.9 0.0 1 1 5.7e-36 5.5e-34 111.4 0.0 1 227 21 199 21 203 0.91 # 7268 # 7951 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 8_6 - 228 N6_N4_Mtase PF01555.13 231 2e-34 112.9 0.0 1 1 5.5e-34 5.2e-32 105.0 0.0 1 228 21 200 21 203 0.88 # 3128 # 3811 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 4_10 - 707 AAA_17 PF13207.1 121 1.1e-07 26.6 0.0 1 1 5.7e-09 2.7e-07 25.3 0.0 1 53 497 552 497 601 0.70 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_18 - 209 AAA_17 PF13207.1 121 2.9e-05 18.7 0.0 1 1 1.6e-06 7.8e-05 17.3 0.0 9 77 11 84 9 205 0.75 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_11 - 503 AAA_17 PF13207.1 121 9.2e-05 17.1 0.0 1 1 5.5e-06 0.00026 15.6 0.0 1 32 231 264 231 361 0.79 # 9128 # 10636 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_21 - 383 AAA_17 PF13207.1 121 0.00075 14.2 0.0 1 1 3.6e-05 0.0017 13.0 0.0 3 22 161 180 161 245 0.81 # 18858 # 20006 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 4_10 - 707 AAA_21 PF13304.1 303 2.4e-09 31.3 0.1 1 1 6.9e-09 1.3e-06 22.3 0.1 2 297 498 662 497 667 0.87 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_18 - 209 MobB PF03205.9 140 0.00011 15.8 0.1 1 1 3.2e-06 0.00031 14.3 0.0 10 42 11 41 1 46 0.79 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 4_10 - 707 MobB PF03205.9 140 0.0015 12.0 0.4 1 1 4.5e-05 0.0043 10.6 0.1 2 21 497 516 496 524 0.87 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_18 - 209 ArsA_ATPase PF02374.10 305 8.3e-08 25.4 0.9 1 3 1.2e-09 2.2e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_18 - 209 ArsA_ATPase PF02374.10 305 8.3e-08 25.4 0.9 2 3 0.053 10 -1.2 0.0 121 135 69 85 47 86 0.75 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_18 - 209 ArsA_ATPase PF02374.10 305 8.3e-08 25.4 0.9 3 3 0.075 14 -1.7 0.0 205 234 132 161 118 202 0.65 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_11 - 503 T2SE PF00437.15 272 5.3e-38 124.2 0.0 1 1 8.5e-40 8.1e-38 123.6 0.0 66 269 161 378 143 381 0.87 # 9128 # 10636 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_21 - 383 T2SE PF00437.15 272 1.5e-34 112.9 0.0 1 1 2.2e-36 2.1e-34 112.5 0.0 111 261 144 292 23 309 0.79 # 18858 # 20006 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_11 - 503 Zeta_toxin PF06414.7 201 0.0016 11.3 0.0 1 1 1.4e-05 0.0028 10.6 0.0 18 39 231 252 216 259 0.79 # 9128 # 10636 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 4_10 - 707 SMC_N PF02463.14 220 9.7e-09 28.5 1.5 1 2 0.0011 0.21 4.6 0.3 26 42 497 513 485 526 0.83 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 4_10 - 707 SMC_N PF02463.14 220 9.7e-09 28.5 1.5 2 2 3.1e-09 5.9e-07 22.7 0.0 136 210 605 675 516 682 0.74 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_18 - 209 VirC1 PF07015.6 231 6.5e-09 29.0 0.0 1 1 7.1e-11 1.4e-08 27.9 0.0 3 172 2 164 1 206 0.74 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_18 - 209 Fer4_NifH PF00142.13 273 0.00014 14.9 0.2 1 1 2.3e-06 0.00044 13.3 0.0 8 38 9 39 2 46 0.89 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_11 - 503 AAA_16 PF13191.1 185 6.2e-05 16.8 0.0 1 1 1.7e-06 0.00011 16.1 0.0 13 52 222 263 216 369 0.84 # 9128 # 10636 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_21 - 383 AAA_16 PF13191.1 185 6.8e-05 16.7 0.1 1 1 3e-06 0.00019 15.2 0.1 25 62 158 192 148 338 0.76 # 18858 # 20006 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 4_10 - 707 AAA_16 PF13191.1 185 0.00045 14.1 0.0 1 1 1.5e-05 0.00099 12.9 0.0 24 106 495 587 489 660 0.57 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_21 - 383 AAA_23 PF13476.1 202 3.4e-05 18.1 0.0 1 1 6.7e-07 6.4e-05 17.1 0.0 20 46 158 185 144 219 0.81 # 18858 # 20006 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_11 - 503 AAA_23 PF13476.1 202 0.00014 16.0 0.0 1 1 2.9e-06 0.00028 15.1 0.0 20 37 230 247 225 262 0.90 # 9128 # 10636 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 4_10 - 707 AAA_18 PF13238.1 129 1.1e-05 19.5 1.9 1 1 2.8e-06 0.00018 15.7 0.5 1 20 498 517 498 534 0.77 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_21 - 383 AAA_18 PF13238.1 129 0.0002 15.5 0.0 1 1 5.8e-06 0.00037 14.6 0.0 2 38 161 193 161 238 0.71 # 18858 # 20006 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_11 - 503 AAA_18 PF13238.1 129 0.0022 12.2 0.1 1 1 7.9e-05 0.005 11.0 0.1 1 18 232 249 232 267 0.87 # 9128 # 10636 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 2_6 - 511 AAA_13 PF13166.1 712 0.0014 11.0 2.2 1 1 4.3e-06 0.00082 11.7 0.4 362 438 6 82 1 90 0.91 # 6664 # 8196 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.586 3_18 - 209 CbiA PF01656.18 195 3.4e-22 72.6 0.0 1 1 3.1e-24 5.9e-22 71.8 0.0 1 158 3 141 3 179 0.75 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_11 - 503 AAA_14 PF13173.1 128 0.0021 11.8 0.0 1 1 2.2e-05 0.0042 10.8 0.0 3 30 230 255 228 267 0.86 # 9128 # 10636 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_11 - 503 AAA_29 PF13555.1 62 3e-05 17.3 0.0 1 1 1.2e-06 7.5e-05 16.1 0.0 20 40 227 246 219 255 0.84 # 9128 # 10636 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_21 - 383 AAA_29 PF13555.1 62 4.2e-05 16.9 0.0 1 1 1.6e-06 0.0001 15.6 0.0 25 43 159 177 149 185 0.84 # 18858 # 20006 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 4_10 - 707 AAA_29 PF13555.1 62 8.9e-05 15.8 0.4 1 1 4.6e-06 0.00029 14.2 0.1 22 40 494 512 486 525 0.83 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_21 - 383 Sigma54_activat PF00158.21 168 0.0012 12.1 0.0 1 1 1.3e-05 0.0024 11.2 0.0 26 47 161 182 145 193 0.84 # 18858 # 20006 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 4_10 - 707 DUF258 PF03193.11 161 4.5e-05 16.5 0.7 1 2 2.2e-06 0.00043 13.3 0.0 26 66 485 526 467 531 0.79 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 4_10 - 707 DUF258 PF03193.11 161 4.5e-05 16.5 0.7 2 2 0.019 3.7 0.5 0.0 23 49 581 607 561 608 0.81 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_54 - 711 TraG-D_C PF12696.2 128 8.5e-08 26.0 0.2 1 2 0.1 19 -1.0 0.1 68 100 178 213 172 225 0.55 # 48390 # 50522 # 1 # ID=1_54;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_54 - 711 TraG-D_C PF12696.2 128 8.5e-08 26.0 0.2 2 2 4.4e-10 8.5e-08 26.0 0.2 1 90 437 525 437 558 0.83 # 48390 # 50522 # 1 # ID=1_54;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 3_18 - 209 AAA_31 PF13614.1 157 8.2e-06 19.6 0.0 1 2 2.5e-07 4.8e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_18 - 209 AAA_31 PF13614.1 157 8.2e-06 19.6 0.0 2 2 0.055 10 -0.2 0.0 109 127 68 86 62 113 0.68 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_11 - 503 AAA_33 PF13671.1 143 0.0012 12.6 0.0 1 1 1.6e-05 0.0031 11.2 0.0 1 19 231 249 231 333 0.71 # 9128 # 10636 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_12 - 228 Methyltransf_26 PF13659.1 117 1.6e-11 38.1 0.1 1 2 3e-07 2.9e-05 17.9 0.0 57 114 7 71 2 74 0.72 # 7268 # 7951 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_12 - 228 Methyltransf_26 PF13659.1 117 1.6e-11 38.1 0.1 2 2 2.5e-07 2.4e-05 18.2 0.0 4 44 167 206 164 221 0.80 # 7268 # 7951 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 8_6 - 228 Methyltransf_26 PF13659.1 117 4.6e-11 36.6 0.1 1 2 1.3e-06 0.00013 15.8 0.0 57 114 7 71 2 74 0.68 # 3128 # 3811 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 8_6 - 228 Methyltransf_26 PF13659.1 117 4.6e-11 36.6 0.1 2 2 1.7e-07 1.6e-05 18.8 0.0 4 45 167 207 164 224 0.81 # 3128 # 3811 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_11 - 503 AAA_30 PF13604.1 196 1.3e-08 28.5 0.0 1 1 1.2e-10 2.4e-08 27.6 0.0 2 45 213 256 212 263 0.92 # 9128 # 10636 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_21 - 383 FtsK_SpoIIIE PF01580.13 205 0.0013 12.0 0.0 1 1 1.2e-05 0.0022 11.2 0.0 40 60 159 179 128 231 0.80 # 18858 # 20006 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_28 - 238 AAA_27 PF13514.1 1111 0.00067 11.2 2.7 1 1 4.5e-06 0.00086 10.8 2.7 316 391 97 171 94 182 0.90 # 27815 # 28528 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.592 4_10 - 707 ABC_tran PF00005.22 137 6.4e-37 120.7 0.1 1 1 2e-38 1.3e-36 119.7 0.1 1 137 485 634 485 634 0.89 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_21 - 383 ABC_tran PF00005.22 137 4e-05 17.7 0.0 1 1 1.2e-06 7.7e-05 16.8 0.0 15 37 161 183 150 212 0.84 # 18858 # 20006 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_11 - 503 ABC_tran PF00005.22 137 0.00068 13.8 0.0 1 1 1.8e-05 0.0012 13.0 0.0 12 37 230 255 224 364 0.90 # 9128 # 10636 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_12 - 228 Cons_hypoth95 PF03602.10 183 2.9e-05 17.3 0.0 1 2 0.00078 0.075 6.2 0.0 112 146 18 54 9 81 0.65 # 7268 # 7951 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_12 - 228 Cons_hypoth95 PF03602.10 183 2.9e-05 17.3 0.0 2 2 9.7e-05 0.0092 9.2 0.0 41 62 162 183 145 218 0.82 # 7268 # 7951 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 8_6 - 228 Cons_hypoth95 PF03602.10 183 5.2e-05 16.5 0.0 1 2 0.0012 0.11 5.6 0.0 112 127 18 33 9 80 0.68 # 3128 # 3811 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 8_6 - 228 Cons_hypoth95 PF03602.10 183 5.2e-05 16.5 0.0 2 2 0.00011 0.011 9.0 0.0 42 63 163 184 145 221 0.76 # 3128 # 3811 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_11 - 503 AAA_19 PF13245.1 76 2.1e-06 21.3 0.0 1 1 5.8e-08 5.5e-06 19.9 0.0 1 36 219 255 219 272 0.76 # 9128 # 10636 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_18 - 209 AAA_19 PF13245.1 76 0.00055 13.5 0.1 1 2 0.00019 0.018 8.6 0.0 20 48 11 35 9 44 0.84 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_18 - 209 AAA_19 PF13245.1 76 0.00055 13.5 0.1 2 2 0.021 2 2.1 0.0 42 63 135 158 118 184 0.76 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_33 - 1015 AAA_10 PF12846.2 304 3.4e-31 102.5 0.0 1 1 3.1e-32 9.8e-31 101.0 0.0 8 303 502 898 498 899 0.92 # 30836 # 33880 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.580 1_54 - 711 AAA_10 PF12846.2 304 1.3e-06 21.8 0.1 1 1 8.4e-08 2.7e-06 20.8 0.1 2 292 137 506 136 516 0.68 # 48390 # 50522 # 1 # ID=1_54;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_21 - 383 AAA_10 PF12846.2 304 3.8e-05 17.0 0.2 1 2 2.1e-05 0.00067 12.9 0.1 3 22 159 178 157 187 0.85 # 18858 # 20006 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_21 - 383 AAA_10 PF12846.2 304 3.8e-05 17.0 0.2 2 2 0.021 0.67 3.1 0.0 178 247 256 347 173 352 0.54 # 18858 # 20006 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_18 - 209 AAA_10 PF12846.2 304 0.0003 14.1 0.0 1 1 1.5e-05 0.00048 13.4 0.0 11 39 11 39 3 66 0.90 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 4_10 - 707 AAA_10 PF12846.2 304 0.00036 13.8 0.1 1 1 8.2e-05 0.0026 11.0 0.0 6 25 500 519 497 532 0.79 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_11 - 503 AAA_10 PF12846.2 304 0.0011 12.3 0.0 1 1 5e-05 0.0016 11.7 0.0 4 28 232 256 229 362 0.77 # 9128 # 10636 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 4_10 - 707 SbcCD_C PF13558.1 90 0.001 12.8 0.1 1 1 5.2e-05 0.0099 9.7 0.1 61 86 621 646 592 650 0.81 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 2_6 - 511 DUF3584 PF12128.3 1201 0.0068 7.5 5.3 1 2 6e-06 0.0012 10.1 1.8 304 377 12 86 5 97 0.88 # 6664 # 8196 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.586 2_6 - 511 DUF3584 PF12128.3 1201 0.0068 7.5 5.3 2 2 0.098 19 -3.9 0.1 277 304 372 399 355 415 0.48 # 6664 # 8196 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.586 1_11 - 503 DEAD PF00270.24 169 0.002 11.4 0.0 1 1 1.6e-05 0.003 10.8 0.0 3 39 216 254 214 340 0.82 # 9128 # 10636 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 5_10 - 283 Methyltransf_27 PF13708.1 194 3.4e-66 216.3 0.0 1 1 4.7e-68 4.5e-66 215.9 0.0 2 194 85 278 84 278 0.96 # 5784 # 6632 # 1 # ID=5_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 6_13 - 177 Methyltransf_27 PF13708.1 194 6.6e-58 189.2 0.0 1 1 7.7e-60 7.3e-58 189.1 0.0 24 194 1 172 1 172 0.96 # 5587 # 6117 # 1 # ID=6_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.499 1_54 - 711 TrwB_AAD_bind PF10412.4 386 7.8e-07 21.8 0.2 1 2 0.00019 0.036 6.4 0.0 11 32 132 153 126 164 0.80 # 48390 # 50522 # 1 # ID=1_54;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_54 - 711 TrwB_AAD_bind PF10412.4 386 7.8e-07 21.8 0.2 2 2 2.2e-06 0.00042 12.8 0.1 260 332 452 525 435 578 0.75 # 48390 # 50522 # 1 # ID=1_54;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_11 - 503 AAA_11 PF13086.1 236 0.00099 12.5 0.0 1 1 6.7e-06 0.0013 12.1 0.0 2 41 213 253 212 353 0.86 # 9128 # 10636 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_12 - 228 MethyltransfD12 PF02086.10 260 0.00074 12.8 0.0 1 2 0.03 2.9 1.0 0.0 175 188 18 31 8 92 0.82 # 7268 # 7951 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_12 - 228 MethyltransfD12 PF02086.10 260 0.00074 12.8 0.0 2 2 6.7e-05 0.0064 9.7 0.0 20 46 163 189 148 214 0.81 # 7268 # 7951 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 8_6 - 228 MethyltransfD12 PF02086.10 260 0.00088 12.6 0.0 1 2 0.054 5.2 0.2 0.1 175 188 18 31 8 38 0.80 # 3128 # 3811 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 8_6 - 228 MethyltransfD12 PF02086.10 260 0.00088 12.6 0.0 2 2 6.6e-05 0.0063 9.8 0.0 20 46 163 189 148 198 0.78 # 3128 # 3811 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 4_10 - 707 ArgK PF03308.11 267 0.00046 12.8 0.0 1 1 4.4e-06 0.00084 11.9 0.0 15 52 481 518 473 528 0.84 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_21 - 383 RNA_helicase PF00910.17 107 0.0001 16.3 0.0 1 1 2.1e-06 0.0002 15.4 0.0 2 33 161 190 160 201 0.82 # 18858 # 20006 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 4_10 - 707 RNA_helicase PF00910.17 107 0.0022 12.0 0.8 1 2 0.00054 0.052 7.6 0.0 3 19 500 516 498 530 0.86 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 4_10 - 707 RNA_helicase PF00910.17 107 0.0022 12.0 0.8 2 2 0.036 3.5 1.7 0.1 48 104 622 676 618 678 0.77 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 2_21 - 175 TIGR00922 TIGR00922 172 0.00022 14.6 0.0 1 1 2.5e-06 0.00024 14.5 0.0 54 104 105 155 48 171 0.88 # 30510 # 31034 # 1 # ID=2_21;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 3_28 - 175 TIGR00922 TIGR00922 172 0.0003 14.2 0.0 1 1 3.5e-06 0.00033 14.0 0.0 54 104 105 155 48 171 0.88 # 19824 # 20348 # 1 # ID=3_28;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.531 1_21 - 383 NACHT PF05729.7 166 0.0012 12.3 0.0 1 1 1.4e-05 0.0027 11.2 0.0 4 30 161 187 159 193 0.82 # 18858 # 20006 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_21 - 383 AAA_25 PF13481.1 194 1.6e-05 18.2 0.0 1 1 5.6e-07 2.7e-05 17.4 0.0 21 55 146 179 127 219 0.78 # 18858 # 20006 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_18 - 209 AAA_25 PF13481.1 194 0.00022 14.4 0.1 1 1 1.2e-05 0.00059 13.1 0.0 42 87 10 44 3 90 0.78 # 11805 # 12431 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_11 - 503 AAA_25 PF13481.1 194 0.00026 14.2 0.0 1 1 1.5e-05 0.00069 12.8 0.0 19 64 214 260 202 276 0.79 # 9128 # 10636 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 4_10 - 707 AAA_25 PF13481.1 194 0.0004 13.6 0.0 1 1 9.4e-05 0.0045 10.2 0.0 29 50 491 512 482 532 0.88 # 5766 # 7886 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 8_6 - 228 Methyltransf_15 PF09445.5 164 0.0013 12.1 0.0 1 2 0.084 8 -0.2 0.0 53 79 4 29 2 33 0.90 # 3128 # 3811 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 8_6 - 228 Methyltransf_15 PF09445.5 164 0.0013 12.1 0.0 2 2 7.4e-05 0.0071 9.7 0.0 2 31 165 194 164 208 0.86 # 3128 # 3811 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_12 - 228 Methyltransf_15 PF09445.5 164 0.0013 12.1 0.0 1 2 0.084 8 -0.2 0.0 53 79 4 29 2 33 0.90 # 7268 # 7951 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_12 - 228 Methyltransf_15 PF09445.5 164 0.0013 12.1 0.0 2 2 7.7e-05 0.0074 9.7 0.0 3 32 166 195 164 209 0.85 # 7268 # 7951 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7d071c53-730e-412e-89c1-cf44f18054a9 # Target file: checkm_output/bins/pm2019/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2019/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7d071c53-730e-412e-89c1-cf44f18054a9 checkm_output/bins/pm2019/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:48 2020 # [ok]