# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 262 Mg_chelatase PF01078.16 207 0.00091 12.1 0.0 1 1 1.1e-05 0.0019 11.1 0.0 23 43 100 120 96 153 0.86 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_8 - 372 ATP_bind_3 PF01171.15 182 0.00027 14.2 0.0 1 2 5.2e-05 0.0094 9.2 0.0 1 59 52 110 52 129 0.78 # 3720 # 4835 # -1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 4_8 - 372 ATP_bind_3 PF01171.15 182 0.00027 14.2 0.0 2 2 0.005 0.91 2.7 0.0 134 161 232 260 207 262 0.72 # 3720 # 4835 # -1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_25 - 347 Seryl_tRNA_N PF02403.17 108 0.047 7.5 46.3 1 5 0.019 3.4 1.5 8.8 39 98 89 152 77 158 0.72 # 19661 # 20701 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_25 - 347 Seryl_tRNA_N PF02403.17 108 0.047 7.5 46.3 2 5 0.00084 0.15 5.9 3.1 50 100 146 196 143 199 0.89 # 19661 # 20701 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_25 - 347 Seryl_tRNA_N PF02403.17 108 0.047 7.5 46.3 3 5 2.6e-06 0.00047 13.9 12.2 19 100 216 294 201 297 0.85 # 19661 # 20701 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_25 - 347 Seryl_tRNA_N PF02403.17 108 0.047 7.5 46.3 4 5 0.00031 0.055 7.3 2.1 62 105 284 327 282 330 0.90 # 19661 # 20701 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_25 - 347 Seryl_tRNA_N PF02403.17 108 0.047 7.5 46.3 5 5 0.0059 1.1 3.1 1.6 82 105 304 327 296 345 0.51 # 19661 # 20701 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_5 - 262 IstB_IS21 PF01695.12 178 5.5e-69 224.8 0.1 1 1 4.1e-71 7.4e-69 224.4 0.1 2 177 55 230 54 231 0.98 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 3_21 - 262 MipZ PF09140.6 261 3.2e-10 33.2 0.0 1 2 6.6e-10 1.2e-07 24.8 0.0 2 52 4 55 3 81 0.83 # 16324 # 17109 # -1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 3_21 - 262 MipZ PF09140.6 261 3.2e-10 33.2 0.0 2 2 0.00031 0.057 6.2 0.0 89 122 117 150 89 166 0.74 # 16324 # 17109 # -1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 2_6 - 562 3HCDH_N PF02737.13 180 0.0055 10.1 6.7 1 2 0.0025 0.45 3.9 2.5 1 30 100 129 100 133 0.93 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 3HCDH_N PF02737.13 180 0.0055 10.1 6.7 2 2 0.00014 0.026 7.9 0.1 2 36 273 307 272 359 0.71 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 GIDA PF01134.17 392 3.7e-06 19.7 2.9 1 4 2.1e-08 3.7e-06 19.7 2.9 1 52 100 153 100 166 0.88 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 GIDA PF01134.17 392 3.7e-06 19.7 2.9 2 4 0.074 13 -1.9 0.0 3 32 274 303 272 335 0.85 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 GIDA PF01134.17 392 3.7e-06 19.7 2.9 3 4 0.067 12 -1.7 0.0 128 167 339 363 311 382 0.57 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 GIDA PF01134.17 392 3.7e-06 19.7 2.9 4 4 0.03 5.5 -0.6 0.0 350 385 391 426 382 430 0.76 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_27 - 504 UvrD_C_2 PF13538.1 104 1.4e-10 35.0 0.0 1 1 3.5e-12 6.3e-10 32.9 0.0 46 99 393 463 352 467 0.67 # 20988 # 22499 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_6 - 562 Pyr_redox_2 PF07992.9 201 1.4e-41 136.3 0.0 1 1 2.8e-43 5.1e-41 134.5 0.0 1 199 100 407 100 409 0.96 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 1_2 - 287 AAA_22 PF13401.1 131 6.8e-17 55.6 0.0 1 1 2e-18 1.2e-16 54.8 0.0 7 126 64 190 59 194 0.94 # 566 # 1426 # 1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_5 - 262 AAA_22 PF13401.1 131 5e-06 20.5 0.1 1 2 8.3e-06 0.0005 14.0 0.2 2 28 97 123 96 159 0.74 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_5 - 262 AAA_22 PF13401.1 131 5e-06 20.5 0.1 2 2 0.0062 0.37 4.7 0.0 87 117 151 196 132 204 0.62 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_27 - 504 AAA_22 PF13401.1 131 5.9e-05 17.0 0.0 1 2 8e-05 0.0048 10.8 0.0 8 68 23 92 17 122 0.63 # 20988 # 22499 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_27 - 504 AAA_22 PF13401.1 131 5.9e-05 17.0 0.0 2 2 0.015 0.9 3.4 0.0 82 124 189 225 164 229 0.77 # 20988 # 22499 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_34 - 542 DNA_methylase PF00145.12 335 1.1e-28 94.0 0.0 1 1 6.3e-30 5.7e-28 91.7 0.0 3 333 126 441 124 443 0.77 # 32263 # 33888 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 3_11 - 476 DNA_methylase PF00145.12 335 1.1e-10 34.9 0.0 1 2 4.1e-11 3.7e-09 29.8 0.0 71 160 228 320 199 324 0.83 # 9512 # 10939 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_11 - 476 DNA_methylase PF00145.12 335 1.1e-10 34.9 0.0 2 2 0.0061 0.55 2.9 0.0 290 330 407 448 341 452 0.73 # 9512 # 10939 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_8 - 93 Ribosomal_L2_C PF03947.13 130 0.0009 12.8 0.0 1 1 6.3e-06 0.0011 12.5 0.0 74 111 44 80 24 82 0.86 # 7672 # 7950 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.441 1_5 - 262 AAA_3 PF07726.6 131 0.00092 12.6 0.0 1 1 1.2e-05 0.0022 11.4 0.0 2 72 102 171 101 201 0.70 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_6 - 562 NAD_binding_7 PF13241.1 103 1.5e-05 18.9 2.1 1 2 6.2e-05 0.011 9.7 0.1 9 38 100 129 97 164 0.90 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 NAD_binding_7 PF13241.1 103 1.5e-05 18.9 2.1 2 2 0.00024 0.044 7.8 0.1 8 41 271 307 264 384 0.68 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 1_43 - 295 N6_N4_Mtase PF01555.13 231 7.2e-09 29.2 0.1 1 2 1.7e-06 0.00031 14.0 0.0 180 223 28 72 4 76 0.84 # 37016 # 37900 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_43 - 295 N6_N4_Mtase PF01555.13 231 7.2e-09 29.2 0.1 2 2 3.5e-06 0.00063 13.0 0.1 2 172 90 267 89 283 0.72 # 37016 # 37900 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_5 - 262 AAA_17 PF13207.1 121 0.0002 15.9 0.0 1 1 1.6e-06 0.00028 15.4 0.0 2 38 102 133 101 232 0.74 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 3_21 - 262 ArsA_ATPase PF02374.10 305 1e-05 18.4 0.0 1 2 3e-07 5.4e-05 16.0 0.0 7 40 9 43 2 79 0.84 # 16324 # 17109 # -1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 3_21 - 262 ArsA_ATPase PF02374.10 305 1e-05 18.4 0.0 2 2 0.029 5.2 -0.3 0.0 124 136 124 136 106 143 0.79 # 16324 # 17109 # -1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_5 - 262 PhoH PF02562.11 205 2.3e-08 27.2 0.1 1 1 5.9e-10 5.3e-08 26.0 0.1 3 61 83 142 81 179 0.77 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_27 - 504 PhoH PF02562.11 205 4.6e-06 19.7 0.2 1 2 0.0026 0.24 4.3 0.0 22 45 22 45 4 61 0.78 # 20988 # 22499 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_27 - 504 PhoH PF02562.11 205 4.6e-06 19.7 0.2 2 2 1.5e-05 0.0013 11.7 0.0 122 168 196 240 193 255 0.83 # 20988 # 22499 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_5 - 262 MCM PF00493.18 331 0.00037 13.1 0.0 1 2 7.5e-06 0.0013 11.2 0.0 56 120 98 162 82 172 0.81 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_5 - 262 MCM PF00493.18 331 0.00037 13.1 0.0 2 2 0.034 6.1 -0.8 0.0 161 211 190 237 186 259 0.71 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_6 - 562 NAD_binding_8 PF13450.1 68 0.00012 15.8 1.2 1 2 6.9e-07 0.00012 15.8 1.2 1 35 103 136 103 155 0.91 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 NAD_binding_8 PF13450.1 68 0.00012 15.8 1.2 2 2 0.091 16 -0.6 0.1 1 25 275 299 275 304 0.78 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 F420_oxidored PF03807.12 96 0.024 8.9 6.4 1 3 0.0019 0.34 5.2 1.1 2 33 101 128 100 132 0.87 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 F420_oxidored PF03807.12 96 0.024 8.9 6.4 2 3 0.0046 0.84 3.9 0.2 1 35 272 302 272 338 0.90 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 F420_oxidored PF03807.12 96 0.024 8.9 6.4 3 3 0.082 15 -0.1 0.0 23 52 351 381 341 388 0.78 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 4_8 - 372 TIGR02432 TIGR02432 189 7.3e-05 16.2 0.1 1 2 1.1e-05 0.0019 11.5 0.0 1 58 52 109 52 119 0.85 # 3720 # 4835 # -1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 4_8 - 372 TIGR02432 TIGR02432 189 7.3e-05 16.2 0.1 2 2 0.0084 1.5 2.1 0.0 140 165 235 260 207 262 0.76 # 3720 # 4835 # -1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_2 - 287 AAA_16 PF13191.1 185 2.5e-05 18.1 0.0 1 2 2.3e-05 0.0014 12.3 0.0 8 52 45 94 43 146 0.70 # 566 # 1426 # 1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_2 - 287 AAA_16 PF13191.1 185 2.5e-05 18.1 0.0 2 2 0.012 0.7 3.6 0.0 139 183 134 184 114 186 0.72 # 566 # 1426 # 1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 3_9 - 206 AAA_16 PF13191.1 185 7.6e-05 16.5 0.1 1 1 1.9e-06 0.00011 15.9 0.1 27 68 11 54 3 168 0.79 # 8183 # 8800 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.516 1_5 - 262 AAA_16 PF13191.1 185 0.00026 14.7 0.1 1 1 1e-05 0.00062 13.5 0.1 23 51 98 126 84 166 0.79 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_25 - 347 AAA_13 PF13166.1 712 0.012 7.7 36.6 1 2 0.0019 0.34 2.9 28.3 283 457 85 259 71 272 0.58 # 19661 # 20701 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_25 - 347 AAA_13 PF13166.1 712 0.012 7.7 36.6 2 2 2.3e-05 0.0042 9.2 23.2 287 474 160 339 154 345 0.78 # 19661 # 20701 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_21 - 262 CbiA PF01656.18 195 2.1e-30 99.3 0.0 1 1 1.5e-32 2.7e-30 98.9 0.0 1 170 5 205 5 229 0.77 # 16324 # 17109 # -1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 2_27 - 504 AAA_14 PF13173.1 128 2.9e-05 17.7 1.3 1 2 2.5e-05 0.0046 10.6 0.1 11 46 28 62 18 156 0.76 # 20988 # 22499 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_27 - 504 AAA_14 PF13173.1 128 2.9e-05 17.7 1.3 2 2 0.0011 0.2 5.3 0.0 51 99 176 227 127 241 0.73 # 20988 # 22499 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_6 - 562 HI0933_like PF03486.9 409 1.8e-08 26.9 5.3 1 2 9.7e-07 0.00018 13.8 2.9 2 33 100 131 99 139 0.91 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 HI0933_like PF03486.9 409 1.8e-08 26.9 5.3 2 2 1.7e-06 0.0003 13.0 0.0 83 164 286 363 281 384 0.86 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 1_5 - 262 AAA_29 PF13555.1 62 2.5e-05 17.5 0.0 1 1 2.8e-07 5.1e-05 16.5 0.0 5 47 80 125 78 136 0.83 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_6 - 562 FAD_binding_2 PF00890.19 417 9e-06 18.4 5.5 1 3 5e-08 9e-06 18.4 5.5 2 32 101 131 100 138 0.91 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 FAD_binding_2 PF00890.19 417 9e-06 18.4 5.5 2 3 0.026 4.8 -0.4 0.6 146 204 315 366 300 385 0.69 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 FAD_binding_2 PF00890.19 417 9e-06 18.4 5.5 3 3 0.011 2.1 0.8 0.1 374 402 375 405 371 418 0.87 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 1_5 - 262 AAA PF00004.24 132 1.9e-07 25.1 0.0 1 1 1.8e-09 3.2e-07 24.4 0.0 1 111 102 202 102 230 0.70 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_5 - 262 Bac_DnaA PF00308.13 219 2.3e-10 34.2 0.0 1 1 2.1e-12 3.7e-10 33.5 0.0 36 136 101 199 80 221 0.87 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_27 - 504 UvrD_C PF13361.1 351 1.6e-10 34.6 0.0 1 1 1.7e-12 3.1e-10 33.7 0.0 238 347 359 468 334 472 0.76 # 20988 # 22499 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 4_8 - 372 PAPS_reduct PF01507.14 174 6.3e-12 39.4 0.4 1 2 0.028 2.5 1.6 0.0 2 17 53 68 52 91 0.76 # 3720 # 4835 # -1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 4_8 - 372 PAPS_reduct PF01507.14 174 6.3e-12 39.4 0.4 2 2 8.8e-13 8e-11 35.8 0.1 58 172 154 279 145 281 0.85 # 3720 # 4835 # -1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_30 - 818 PAPS_reduct PF01507.14 174 4.5e-05 17.0 0.0 1 1 2.1e-06 0.00019 15.0 0.0 3 151 69 256 67 261 0.69 # 27983 # 30436 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.522 2_6 - 562 Pyr_redox_3 PF13738.1 203 1.2e-18 61.7 0.1 1 3 3.1e-06 0.00055 13.7 0.1 167 199 98 130 70 144 0.84 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 Pyr_redox_3 PF13738.1 203 1.2e-18 61.7 0.1 2 3 6.4e-09 1.1e-06 22.5 0.0 115 201 219 304 172 306 0.78 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 Pyr_redox_3 PF13738.1 203 1.2e-18 61.7 0.1 3 3 1e-08 1.9e-06 21.8 0.0 88 155 316 378 308 431 0.85 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 1_2 - 287 TniB PF05621.6 302 6.2e-201 659.2 5.6 1 1 3.8e-203 6.9e-201 659.0 5.6 1 285 1 285 1 286 1.00 # 566 # 1426 # 1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 3_18 - 212 N6_Mtase PF02384.11 311 6.7e-07 22.3 0.0 1 1 5.9e-09 1.1e-06 21.7 0.0 3 97 71 166 69 201 0.72 # 14130 # 14765 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 3_21 - 262 AAA_31 PF13614.1 157 2.4e-10 34.3 0.0 1 1 2.6e-12 4.7e-10 33.3 0.0 1 149 3 157 3 165 0.79 # 16324 # 17109 # -1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_5 - 262 AAA_33 PF13671.1 143 0.00066 13.3 0.2 1 1 8.9e-06 0.0016 12.1 0.2 2 36 102 142 102 255 0.67 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_5 - 262 KTI12 PF08433.5 270 0.00031 13.7 0.4 1 2 6.4e-05 0.012 8.6 0.0 4 81 102 172 101 174 0.68 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_5 - 262 KTI12 PF08433.5 270 0.00031 13.7 0.4 2 2 0.0037 0.66 2.8 0.1 34 59 232 257 212 261 0.77 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_5 - 262 DnaB_C PF03796.10 259 0.00027 13.6 0.0 1 1 2.4e-06 0.00044 12.9 0.0 16 55 96 135 85 158 0.90 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_27 - 504 AAA_30 PF13604.1 196 8.8e-08 25.7 0.1 1 2 1.8e-06 0.00017 15.0 0.0 19 80 20 81 11 109 0.77 # 20988 # 22499 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_27 - 504 AAA_30 PF13604.1 196 8.8e-08 25.7 0.1 2 2 0.00035 0.031 7.5 0.0 115 133 211 229 174 278 0.75 # 20988 # 22499 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_5 - 262 AAA_30 PF13604.1 196 0.00084 12.7 0.2 1 1 2.8e-05 0.0025 11.1 0.1 16 49 97 131 87 162 0.73 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 3_9 - 206 FtsK_SpoIIIE PF01580.13 205 0.0013 11.9 0.2 1 2 2.4e-05 0.0042 10.3 0.0 34 53 4 23 1 28 0.83 # 8183 # 8800 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.516 3_9 - 206 FtsK_SpoIIIE PF01580.13 205 0.0013 11.9 0.2 2 2 0.061 11 -0.9 0.0 146 146 123 123 71 174 0.58 # 8183 # 8800 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.516 2_6 - 562 K_oxygenase PF13434.1 341 6.7e-06 18.9 0.4 1 3 0.0064 1.2 1.7 0.3 189 223 97 129 86 132 0.76 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 K_oxygenase PF13434.1 341 6.7e-06 18.9 0.4 2 3 1.9e-06 0.00035 13.3 0.0 130 233 217 311 200 342 0.78 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 K_oxygenase PF13434.1 341 6.7e-06 18.9 0.4 3 3 0.019 3.4 0.1 0.0 129 160 333 366 313 378 0.68 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 1_5 - 262 RuvB_N PF05496.7 234 0.00094 12.0 0.0 1 1 7.1e-06 0.0013 11.5 0.0 48 75 97 124 45 170 0.84 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_27 - 504 AAA_19 PF13245.1 76 2.8e-09 30.4 0.0 1 1 8.4e-11 7.5e-09 29.0 0.0 8 75 18 77 12 78 0.88 # 20988 # 22499 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_5 - 262 AAA_19 PF13245.1 76 6.7e-07 22.8 0.0 1 1 1.9e-08 1.8e-06 21.4 0.0 11 37 101 126 95 147 0.81 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_6 - 562 FAD_oxidored PF12831.2 428 4.2e-06 19.7 4.0 1 2 2.3e-08 4.2e-06 19.7 4.0 2 41 101 139 100 159 0.83 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 FAD_oxidored PF12831.2 428 4.2e-06 19.7 4.0 2 2 0.021 3.7 0.2 0.0 85 119 306 339 260 364 0.71 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 DAO PF01266.19 358 1.6e-10 34.0 10.4 1 2 4.6e-08 8.4e-06 18.6 1.4 2 35 101 134 100 161 0.85 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 DAO PF01266.19 358 1.6e-10 34.0 10.4 2 2 1.1e-08 2.1e-06 20.6 0.9 151 205 314 367 302 479 0.80 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_27 - 504 ResIII PF04851.10 184 1.9e-06 21.5 0.0 1 1 2.8e-08 5e-06 20.2 0.0 23 75 17 69 7 107 0.78 # 20988 # 22499 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_25 - 347 DUF3584 PF12128.3 1201 0.03 5.3 51.1 1 2 0.0051 0.92 0.4 32.3 377 534 86 242 42 246 0.65 # 19661 # 20701 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_25 - 347 DUF3584 PF12128.3 1201 0.03 5.3 51.1 2 2 2e-05 0.0036 8.3 20.6 613 709 225 327 220 345 0.80 # 19661 # 20701 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_27 - 504 Viral_helicase1 PF01443.13 234 1.6e-10 34.6 0.0 1 3 1.4e-05 0.0026 11.0 0.0 2 49 23 73 22 87 0.67 # 20988 # 22499 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_27 - 504 Viral_helicase1 PF01443.13 234 1.6e-10 34.6 0.0 2 3 1.8e-05 0.0033 10.7 0.0 56 105 188 234 146 256 0.78 # 20988 # 22499 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_27 - 504 Viral_helicase1 PF01443.13 234 1.6e-10 34.6 0.0 3 3 5.2e-05 0.0093 9.2 0.0 176 227 404 462 344 467 0.75 # 20988 # 22499 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_5 - 262 DUF815 PF05673.8 250 0.0004 13.1 0.0 1 1 3.6e-06 0.00065 12.4 0.0 23 76 65 122 46 139 0.79 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_6 - 562 Pyr_redox PF00070.22 80 3e-19 63.0 4.9 1 2 2.2e-06 0.0004 14.6 1.2 2 31 101 130 100 132 0.95 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 Pyr_redox PF00070.22 80 3e-19 63.0 4.9 2 2 3.3e-17 6e-15 49.2 0.1 1 70 272 340 272 351 0.90 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_27 - 504 AAA_11 PF13086.1 236 5.2e-07 23.2 0.1 1 1 3.8e-08 3.4e-06 20.5 0.1 23 228 25 228 8 229 0.66 # 20988 # 22499 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_5 - 262 AAA_11 PF13086.1 236 0.00081 12.7 0.3 1 1 1.7e-05 0.0016 11.8 0.3 6 44 89 142 82 260 0.72 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_5 - 262 Sigma54_activ_2 PF14532.1 138 0.00053 13.8 0.1 1 1 7.7e-06 0.0014 12.4 0.0 3 44 79 122 77 151 0.81 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_2 - 287 AAA_32 PF13654.1 509 0.00025 13.5 0.1 1 2 6.6e-06 0.0012 11.3 0.0 8 81 34 112 26 124 0.86 # 566 # 1426 # 1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_2 - 287 AAA_32 PF13654.1 509 0.00025 13.5 0.1 2 2 0.02 3.7 -0.3 0.1 472 502 255 285 242 286 0.89 # 566 # 1426 # 1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 4_8 - 372 tRNA_Me_trans PF03054.11 356 6.8e-05 15.2 0.0 1 2 1.1e-06 0.00021 13.6 0.0 2 71 52 122 51 144 0.74 # 3720 # 4835 # -1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 4_8 - 372 tRNA_Me_trans PF03054.11 356 6.8e-05 15.2 0.0 2 2 0.042 7.5 -1.4 0.0 193 224 274 305 236 311 0.83 # 3720 # 4835 # -1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 5_1 - 812 CIDE-N PF02017.10 78 0.00099 12.6 0.1 1 3 0.022 4 1.1 0.0 42 54 69 81 59 84 0.79 # 3 # 2438 # -1 # ID=5_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.492 5_1 - 812 CIDE-N PF02017.10 78 0.00099 12.6 0.1 2 3 0.0055 0.99 3.0 0.0 44 61 121 138 115 141 0.87 # 3 # 2438 # -1 # ID=5_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.492 5_1 - 812 CIDE-N PF02017.10 78 0.00099 12.6 0.1 3 3 0.0038 0.68 3.6 0.0 47 73 727 754 717 757 0.80 # 3 # 2438 # -1 # ID=5_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.492 2_6 - 562 AlaDh_PNT_C PF01262.16 168 1.3e-06 21.8 4.6 1 2 1.5e-06 0.00027 14.2 1.3 3 50 81 128 79 131 0.91 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 562 AlaDh_PNT_C PF01262.16 168 1.3e-06 21.8 4.6 2 2 9.9e-05 0.018 8.3 0.1 19 63 269 313 260 359 0.86 # 2623 # 4308 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_27 - 504 UvrD-helicase PF00580.16 315 9.8e-17 54.9 3.9 1 2 2.9e-06 0.00052 13.1 0.1 2 38 8 44 7 64 0.81 # 20988 # 22499 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_27 - 504 UvrD-helicase PF00580.16 315 9.8e-17 54.9 3.9 2 2 3.4e-15 6.1e-13 42.4 0.3 236 305 161 239 46 246 0.72 # 20988 # 22499 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_5 - 262 NACHT PF05729.7 166 0.0022 11.4 2.1 1 2 5.9e-05 0.011 9.2 0.3 3 23 102 122 100 148 0.84 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_5 - 262 NACHT PF05729.7 166 0.0022 11.4 2.1 2 2 0.012 2.1 1.7 0.1 80 127 156 200 139 221 0.76 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_5 - 262 AAA_25 PF13481.1 194 0.0002 14.6 0.0 1 1 3.6e-06 0.00032 13.8 0.0 29 57 95 123 76 170 0.86 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 3_21 - 262 AAA_25 PF13481.1 194 0.0007 12.7 0.0 1 1 1.2e-05 0.0011 12.1 0.0 42 91 12 51 11 134 0.78 # 16324 # 17109 # -1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_5 - 262 AAA_28 PF13521.1 163 1.6e-05 18.6 1.1 1 1 4.6e-07 8.2e-05 16.3 0.8 1 24 101 124 101 239 0.90 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_5 - 262 AAA_5 PF07728.9 139 0.00034 14.1 0.2 1 1 4.3e-06 0.00078 12.9 0.2 1 19 101 119 101 243 0.78 # 4654 # 5439 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6ce3f405-5afa-4565-8f56-d05c9532c140 # Target file: checkm_output/bins/pm2017/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2017/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6ce3f405-5afa-4565-8f56-d05c9532c140 checkm_output/bins/pm2017/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:48 2020 # [ok]