# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_49 - 372 ATP_bind_3 PF01171.15 182 5.8e-05 15.1 0.1 1 3 3.9e-05 0.0028 9.6 0.0 1 61 52 112 52 133 0.79 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_49 - 372 ATP_bind_3 PF01171.15 182 5.8e-05 15.1 0.1 2 3 0.091 6.6 -1.4 0.0 75 94 208 227 204 236 0.73 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_49 - 372 ATP_bind_3 PF01171.15 182 5.8e-05 15.1 0.1 3 3 0.0052 0.37 2.7 0.0 131 161 229 260 212 262 0.73 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_35 - 262 MipZ PF09140.6 261 7e-11 34.1 0.0 1 2 3.4e-10 2.5e-08 25.7 0.0 2 59 4 62 3 85 0.80 # 23964 # 24749 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_35 - 262 MipZ PF09140.6 261 7e-11 34.1 0.0 2 2 0.00031 0.023 6.2 0.0 89 122 117 150 89 166 0.74 # 23964 # 24749 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 4_3 - 226 UvrD_C_2 PF13538.1 104 2.7e-11 36.0 0.0 1 1 7.5e-13 5.4e-11 35.1 0.0 46 99 123 196 83 200 0.67 # 1857 # 2534 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 1_24 - 478 DNA_methylase PF00145.12 335 6.9e-11 34.2 0.0 1 2 1.9e-11 1.4e-09 29.9 0.0 71 160 228 320 198 324 0.82 # 17366 # 18799 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_24 - 478 DNA_methylase PF00145.12 335 6.9e-11 34.2 0.0 2 2 0.0054 0.39 2.1 0.0 290 330 407 448 342 452 0.73 # 17366 # 18799 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 3_2 - 370 ADH_zinc_N_2 PF13602.1 127 6.5e-06 19.5 0.0 1 1 2.1e-07 1.5e-05 18.4 0.0 2 121 231 362 230 363 0.63 # 565 # 1674 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 3_2 - 370 ADH_zinc_N PF00107.21 130 9.3e-24 75.9 0.2 1 1 2e-25 1.5e-23 75.3 0.2 1 128 197 330 197 332 0.90 # 565 # 1674 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_35 - 262 ArsA_ATPase PF02374.10 305 4.2e-06 18.4 0.0 1 2 3e-07 2.2e-05 16.0 0.0 7 40 9 43 2 79 0.84 # 23964 # 24749 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_35 - 262 ArsA_ATPase PF02374.10 305 4.2e-06 18.4 0.0 2 2 0.029 2.1 -0.3 0.0 124 136 124 136 106 143 0.79 # 23964 # 24749 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_49 - 372 TIGR02432 TIGR02432 189 2e-05 16.7 0.1 1 2 8.1e-06 0.00058 11.9 0.0 1 60 52 111 52 120 0.85 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_49 - 372 TIGR02432 TIGR02432 189 2e-05 16.7 0.1 2 2 0.01 0.74 1.8 0.0 140 165 235 260 212 262 0.78 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_35 - 262 CbiA PF01656.18 195 6.2e-31 99.7 0.0 1 1 1.1e-32 7.7e-31 99.4 0.0 1 174 5 208 5 230 0.77 # 23964 # 24749 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 4_3 - 226 UvrD_C PF13361.1 351 2.3e-11 36.1 0.0 1 1 4e-13 2.9e-11 35.8 0.0 237 347 91 201 35 205 0.74 # 1857 # 2534 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 1_6 - 100 Thi4 PF01946.12 230 0.00011 13.7 0.1 1 1 1.7e-06 0.00012 13.6 0.1 164 226 16 77 4 81 0.87 # 4557 # 4856 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_49 - 372 PAPS_reduct PF01507.14 174 8.8e-12 37.6 0.3 1 2 0.014 1 1.6 0.0 2 17 53 68 52 91 0.76 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_49 - 372 PAPS_reduct PF01507.14 174 8.8e-12 37.6 0.3 2 2 1.6e-12 1.1e-10 34.0 0.1 58 172 154 279 144 281 0.84 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_31 - 212 N6_Mtase PF02384.11 311 3e-07 22.2 0.0 1 1 5.7e-09 4.1e-07 21.7 0.0 3 97 71 166 69 205 0.73 # 21773 # 22408 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_35 - 262 AAA_31 PF13614.1 157 8.9e-11 34.4 0.0 1 1 2.7e-12 2e-10 33.3 0.0 1 149 3 157 3 164 0.79 # 23964 # 24749 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_23 - 206 AAA_33 PF13671.1 143 0.00024 13.4 0.0 1 1 4.4e-06 0.00031 13.1 0.0 3 36 12 48 11 166 0.84 # 16694 # 17311 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.508 3_2 - 370 2-Hacid_dh_C PF02826.14 178 0.00036 12.2 0.1 1 1 9.6e-06 0.00069 11.2 0.1 34 76 185 228 173 240 0.82 # 565 # 1674 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 3_2 - 370 Met_10 PF02475.11 200 5.8e-05 15.2 0.0 1 1 1.4e-06 0.0001 14.4 0.0 98 143 183 229 178 305 0.81 # 565 # 1674 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 4_3 - 226 AAA_12 PF13087.1 200 7.7e-05 14.6 0.3 1 1 1.8e-06 0.00013 13.8 0.0 41 160 47 161 31 164 0.67 # 1857 # 2534 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 4_3 - 226 Viral_helicase1 PF01443.13 234 0.0005 12.0 0.0 1 1 1.2e-05 0.00088 11.2 0.0 172 227 135 195 85 200 0.73 # 1857 # 2534 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 1_49 - 372 tRNA_Me_trans PF03054.11 356 7.1e-05 13.9 0.0 1 2 2.5e-06 0.00018 12.5 0.0 2 63 52 110 51 133 0.80 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_49 - 372 tRNA_Me_trans PF03054.11 356 7.1e-05 13.9 0.0 2 2 0.068 4.9 -2.1 0.0 192 223 273 304 240 310 0.83 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 3_2 - 370 TrkA_N PF02254.13 116 5.2e-05 15.7 0.0 1 1 1.3e-06 9.3e-05 14.9 0.0 1 45 190 236 190 246 0.83 # 565 # 1674 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_35 - 262 AAA_25 PF13481.1 194 9.1e-05 14.3 0.0 1 1 2.1e-06 0.00015 13.6 0.0 42 108 12 67 11 134 0.79 # 23964 # 24749 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/885302d5-55d1-4e44-8dad-5022f9ab0a2f # Target file: checkm_output/bins/pm2014/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2014/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/885302d5-55d1-4e44-8dad-5022f9ab0a2f checkm_output/bins/pm2014/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:46 2020 # [ok]