# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_21 - 266 Mg_chelatase PF01078.16 207 0.0007 12.1 0.0 1 1 1e-05 0.0014 11.1 0.0 23 42 98 117 84 124 0.89 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_39 - 188 Methyltransf_12 PF08242.7 99 1.8e-05 18.5 0.0 1 1 2e-07 2.7e-05 18.0 0.0 1 99 55 144 55 144 0.86 # 40605 # 41168 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_27 - 228 UPF0020 PF01170.13 180 4.9e-06 19.5 0.0 1 2 8.1e-05 0.011 8.6 0.0 102 123 16 37 2 89 0.68 # 32892 # 33575 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_27 - 228 UPF0020 PF01170.13 180 4.9e-06 19.5 0.0 2 2 6e-05 0.0081 9.0 0.0 28 54 163 189 158 221 0.67 # 32892 # 33575 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_39 - 188 RrnaAD PF00398.15 262 5.2e-09 28.8 0.0 1 1 4.9e-11 6.5e-09 28.4 0.0 9 113 29 128 24 150 0.89 # 40605 # 41168 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_21 - 266 IstB_IS21 PF01695.12 178 1.6e-77 252.2 0.7 1 2 0.07 9.3 -1.1 0.2 83 111 4 32 2 33 0.86 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 IstB_IS21 PF01695.12 178 1.6e-77 252.2 0.7 2 2 2.6e-79 3.5e-77 251.1 0.0 1 177 51 227 51 228 0.99 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_24 - 389 MipZ PF09140.6 261 5.7e-06 18.8 0.4 1 2 3.5e-06 0.00047 12.6 0.0 2 47 108 153 107 157 0.87 # 28686 # 29852 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 1_24 - 389 MipZ PF09140.6 261 5.7e-06 18.8 0.4 2 2 0.0011 0.15 4.4 0.0 88 134 224 270 197 293 0.84 # 28686 # 29852 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 1_41 - 178 SSB PF00436.20 104 4.5e-41 132.3 0.3 1 1 4.3e-43 5.8e-41 132.0 0.3 1 101 6 109 6 112 0.96 # 41982 # 42515 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_39 - 188 Methyltransf_18 PF12847.2 112 1.3e-10 35.2 0.0 1 1 2.1e-12 2.8e-10 34.1 0.0 4 109 53 146 50 148 0.89 # 40605 # 41168 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_84 - 1757 UvrD_C_2 PF13538.1 104 9.8e-07 22.3 0.6 1 2 0.036 4.9 0.7 0.0 6 43 1227 1264 1223 1294 0.74 # 75479 # 80749 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_84 - 1757 UvrD_C_2 PF13538.1 104 9.8e-07 22.3 0.6 2 2 1.1e-07 1.4e-05 18.5 0.2 3 102 1341 1444 1339 1446 0.77 # 75479 # 80749 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_63 - 876 DUF87 PF01935.12 229 1.5e-07 24.7 0.0 1 1 3.3e-09 4.4e-07 23.2 0.0 26 222 482 669 468 676 0.77 # 56575 # 59202 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_21 - 266 AAA_22 PF13401.1 131 4.2e-07 23.5 0.3 1 2 2.6e-05 0.0034 10.8 0.0 5 21 98 114 94 134 0.85 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 AAA_22 PF13401.1 131 4.2e-07 23.5 0.3 2 2 3.7e-05 0.0049 10.3 0.1 77 121 147 195 132 203 0.72 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 AAA_3 PF07726.6 131 0.0011 11.9 0.0 1 1 1.4e-05 0.0019 11.1 0.0 2 75 100 171 99 222 0.74 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_100 - 699 KAP_NTPase PF07693.9 325 0.0041 9.4 3.8 1 2 0.0013 0.18 4.0 0.1 30 59 51 78 45 91 0.91 # 92441 # 94537 # 1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.343 1_100 - 699 KAP_NTPase PF07693.9 325 0.0041 9.4 3.8 2 2 0.00058 0.078 5.2 0.6 156 183 180 207 168 215 0.85 # 92441 # 94537 # 1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.343 1_27 - 228 N6_N4_Mtase PF01555.13 231 4.3e-36 117.8 0.0 1 2 1.6e-15 2.1e-13 43.5 0.0 1 114 21 124 21 131 0.89 # 32892 # 33575 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_27 - 228 N6_N4_Mtase PF01555.13 231 4.3e-36 117.8 0.0 2 2 2.2e-24 2.9e-22 72.6 0.0 169 226 141 198 126 203 0.91 # 32892 # 33575 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_21 - 266 AAA_17 PF13207.1 121 1.4e-05 19.2 0.0 1 1 1.2e-06 7.8e-05 16.8 0.0 2 64 100 156 99 198 0.57 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_81 - 718 AAA_17 PF13207.1 121 0.0004 14.6 0.0 1 1 1.9e-05 0.0013 12.9 0.0 3 27 189 217 187 284 0.70 # 72610 # 74763 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_63 - 876 MobB PF03205.9 140 0.00034 13.7 0.2 1 2 5.4e-05 0.0036 10.3 0.0 4 37 483 515 481 523 0.79 # 56575 # 59202 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_63 - 876 MobB PF03205.9 140 0.00034 13.7 0.2 2 2 0.069 4.6 0.3 0.0 25 64 695 732 690 744 0.86 # 56575 # 59202 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_81 - 718 MobB PF03205.9 140 0.0012 11.8 0.0 1 1 5.1e-05 0.0034 10.4 0.0 7 34 192 219 188 225 0.89 # 72610 # 74763 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_53 - 122 CTP_transf_2 PF01467.21 157 0.0013 12.1 0.0 1 1 1.1e-05 0.0015 11.9 0.0 32 67 7 41 2 98 0.65 # 51099 # 51464 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_24 - 389 ArsA_ATPase PF02374.10 305 2.3e-06 20.1 0.4 1 2 3.3e-06 0.00022 13.6 0.1 9 36 115 142 109 151 0.89 # 28686 # 29852 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 1_24 - 389 ArsA_ATPase PF02374.10 305 2.3e-06 20.1 0.4 2 2 0.0022 0.15 4.3 0.0 123 136 231 244 221 251 0.84 # 28686 # 29852 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 1_21 - 266 ArsA_ATPase PF02374.10 305 0.0009 11.6 0.0 1 1 2.1e-05 0.0014 11.0 0.0 6 38 102 134 98 169 0.91 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 PhoH PF02562.11 205 2e-06 20.5 0.0 1 1 3.5e-08 4.7e-06 19.3 0.0 15 47 93 125 80 149 0.87 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 AFG1_ATPase PF03969.11 362 1.7e-06 20.3 0.0 1 1 1.7e-08 2.3e-06 19.9 0.0 63 227 98 258 53 263 0.80 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_91 - 86 Cytidylate_kin2 PF13189.1 179 0.0002 14.6 0.3 1 1 1.8e-06 0.00024 14.4 0.3 112 155 40 83 30 85 0.85 # 84559 # 84816 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_81 - 718 Zeta_toxin PF06414.7 201 0.00088 11.7 0.0 1 1 3.4e-05 0.0046 9.4 0.0 21 49 190 219 182 236 0.85 # 72610 # 74763 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_24 - 389 VirC1 PF07015.6 231 0.00017 14.0 0.1 1 2 0.00028 0.038 6.3 0.0 4 42 109 147 107 154 0.91 # 28686 # 29852 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 1_24 - 389 VirC1 PF07015.6 231 0.00017 14.0 0.1 2 2 0.0006 0.08 5.3 0.1 84 138 235 289 222 311 0.77 # 28686 # 29852 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 1_100 - 699 Arch_ATPase PF01637.13 234 8e-05 15.7 0.5 1 1 1e-05 0.00069 12.6 0.5 19 130 40 208 32 240 0.76 # 92441 # 94537 # 1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.343 1_21 - 266 Arch_ATPase PF01637.13 234 0.00046 13.2 0.0 1 1 3.3e-05 0.0022 11.0 0.0 18 120 95 192 81 196 0.61 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_100 - 699 AAA_16 PF13191.1 185 9.8e-08 25.5 0.0 1 1 4.8e-09 2.2e-07 24.4 0.0 27 166 44 212 30 236 0.65 # 92441 # 94537 # 1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.343 1_81 - 718 AAA_16 PF13191.1 185 6.4e-06 19.6 0.0 1 1 5.9e-07 2.6e-05 17.6 0.0 21 60 182 222 179 263 0.81 # 72610 # 74763 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_21 - 266 AAA_16 PF13191.1 185 9.7e-06 19.0 1.5 1 2 0.04 1.8 1.8 0.0 127 173 25 88 3 93 0.61 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 AAA_16 PF13191.1 185 9.7e-06 19.0 1.5 2 2 6.8e-06 0.0003 14.1 0.7 23 51 96 124 88 195 0.82 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 AAA_18 PF13238.1 129 0.0007 13.2 0.3 1 1 1.5e-05 0.002 11.8 0.2 1 19 100 118 100 160 0.82 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 4_3 - 513 AAA_13 PF13166.1 712 0.00082 11.2 2.6 1 1 3.1e-06 0.00042 12.1 0.6 362 438 6 82 1 91 0.91 # 869 # 2407 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.584 1_24 - 389 CbiA PF01656.18 195 7.3e-36 116.7 0.0 1 1 1.5e-37 9.8e-36 116.3 0.0 2 194 110 339 109 340 0.80 # 28686 # 29852 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 1_21 - 266 CbiA PF01656.18 195 9.1e-05 15.2 0.0 1 1 1.9e-06 0.00013 14.8 0.0 9 63 107 171 100 249 0.67 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 AAA_14 PF13173.1 128 4.2e-08 26.5 0.0 1 1 1.2e-09 1.7e-07 24.6 0.0 3 96 98 197 96 206 0.72 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 AAA PF00004.24 132 6.2e-09 29.5 0.0 1 1 1.3e-10 1.7e-08 28.1 0.0 1 74 100 174 100 202 0.73 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 Bac_DnaA PF00308.13 219 3.3e-12 39.8 0.0 1 1 4e-14 5.3e-12 39.1 0.0 36 139 99 199 71 212 0.87 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 Sigma54_activat PF00158.21 168 0.00045 13.0 0.1 1 1 0.00015 0.021 7.6 0.1 19 42 94 117 82 191 0.79 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_39 - 188 N6_Mtase PF02384.11 311 0.00016 14.1 0.0 1 2 1e-05 0.0014 11.1 0.0 28 62 32 66 20 75 0.89 # 40605 # 41168 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_39 - 188 N6_Mtase PF02384.11 311 0.00016 14.1 0.0 2 2 0.018 2.4 0.4 0.0 127 137 114 124 103 134 0.82 # 40605 # 41168 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_81 - 718 TraG-D_C PF12696.2 128 1e-20 67.3 0.0 1 1 1.3e-22 1.8e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 72610 # 74763 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_24 - 389 AAA_31 PF13614.1 157 1.3e-09 31.5 0.0 1 2 1.4e-08 1.8e-06 21.3 0.0 2 49 108 155 107 195 0.91 # 28686 # 29852 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 1_24 - 389 AAA_31 PF13614.1 157 1.3e-09 31.5 0.0 2 2 0.00018 0.024 7.9 0.1 110 152 227 268 223 272 0.84 # 28686 # 29852 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 1_21 - 266 NTPase_1 PF03266.10 168 0.0004 13.4 0.0 1 2 0.00058 0.077 6.0 0.0 2 17 100 115 99 129 0.80 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 NTPase_1 PF03266.10 168 0.0004 13.4 0.0 2 2 0.001 0.14 5.2 0.0 83 107 147 170 136 197 0.76 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 AAA_33 PF13671.1 143 0.00042 13.5 0.0 1 1 7.6e-06 0.001 12.3 0.0 2 40 100 143 100 169 0.64 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 KTI12 PF08433.5 270 0.00085 11.8 0.0 1 1 1.2e-05 0.0015 11.0 0.0 4 82 100 170 99 199 0.78 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_39 - 188 Methyltransf_26 PF13659.1 117 6.9e-14 45.2 0.0 1 1 1.6e-15 1.1e-13 44.6 0.0 2 114 52 147 51 150 0.90 # 40605 # 41168 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_27 - 228 Methyltransf_26 PF13659.1 117 4.6e-13 42.6 0.1 1 2 6.9e-09 4.6e-07 23.2 0.0 53 114 3 71 2 74 0.78 # 32892 # 33575 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_27 - 228 Methyltransf_26 PF13659.1 117 4.6e-13 42.6 0.1 2 2 4.7e-07 3.2e-05 17.3 0.0 4 34 167 196 164 221 0.79 # 32892 # 33575 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_84 - 1757 AAA_30 PF13604.1 196 2e-44 144.8 15.5 1 2 2e-05 0.00087 12.2 4.1 7 147 420 552 416 562 0.82 # 75479 # 80749 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_84 - 1757 AAA_30 PF13604.1 196 2e-44 144.8 15.5 2 2 1.2e-43 5.2e-42 136.9 1.9 1 186 968 1156 968 1162 0.94 # 75479 # 80749 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_100 - 699 AAA_30 PF13604.1 196 3.3e-05 16.8 0.0 1 1 2.1e-06 9.4e-05 15.3 0.0 10 55 34 77 31 104 0.83 # 92441 # 94537 # 1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.343 1_81 - 718 AAA_30 PF13604.1 196 0.00078 12.4 0.0 1 1 3.8e-05 0.0017 11.3 0.0 21 57 188 224 180 230 0.85 # 72610 # 74763 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_63 - 876 FtsK_SpoIIIE PF01580.13 205 5.6e-06 19.3 0.2 1 2 2e-06 0.00027 13.7 0.0 39 63 476 504 463 507 0.84 # 56575 # 59202 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_63 - 876 FtsK_SpoIIIE PF01580.13 205 5.6e-06 19.3 0.2 2 2 0.0038 0.51 3.0 0.1 75 167 530 626 529 632 0.85 # 56575 # 59202 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_39 - 188 MTS PF05175.9 170 3.3e-09 29.7 0.0 1 1 3.4e-11 4.5e-09 29.2 0.0 31 142 50 150 40 167 0.84 # 40605 # 41168 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_21 - 266 AAA_35 PF14516.1 331 0.00053 11.9 0.2 1 3 0.0049 0.66 1.8 0.1 237 272 10 42 5 59 0.79 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 AAA_35 PF14516.1 331 0.00053 11.9 0.2 2 3 0.0042 0.57 2.0 0.0 21 75 87 141 75 153 0.77 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 AAA_35 PF14516.1 331 0.00053 11.9 0.2 3 3 0.00079 0.11 4.4 0.1 122 161 153 192 144 199 0.90 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_39 - 188 Met_10 PF02475.11 200 0.00042 13.2 0.0 1 1 4.2e-06 0.00057 12.8 0.0 94 189 41 132 29 145 0.79 # 40605 # 41168 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_27 - 228 Cons_hypoth95 PF03602.10 183 1.5e-05 17.8 0.0 1 2 0.00022 0.029 7.0 0.0 112 146 18 54 2 82 0.64 # 32892 # 33575 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_27 - 228 Cons_hypoth95 PF03602.10 183 1.5e-05 17.8 0.0 2 2 6.2e-05 0.0084 8.8 0.0 41 61 162 182 150 214 0.85 # 32892 # 33575 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_21 - 266 RuvB_N PF05496.7 234 1.4e-05 17.5 0.1 1 1 2.2e-07 2.9e-05 16.5 0.1 48 119 95 176 73 187 0.73 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 AAA_19 PF13245.1 76 1e-07 25.0 0.1 1 1 5.8e-09 3.9e-07 23.1 0.0 13 52 100 135 87 150 0.83 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_84 - 1757 AAA_19 PF13245.1 76 1.5e-07 24.4 1.4 1 1 8.9e-09 6e-07 22.5 0.3 7 76 981 1047 974 1047 0.74 # 75479 # 80749 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_63 - 876 AAA_10 PF12846.2 304 5.2e-49 160.6 0.0 1 1 2e-50 8.9e-49 159.8 0.0 1 294 479 768 479 774 0.88 # 56575 # 59202 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_81 - 718 AAA_10 PF12846.2 304 1.7e-10 34.1 0.0 1 1 7.2e-11 3.2e-09 29.9 0.0 3 296 187 494 186 499 0.69 # 72610 # 74763 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_21 - 266 AAA_10 PF12846.2 304 0.00014 14.6 0.0 1 1 6.2e-06 0.00028 13.7 0.0 2 35 98 131 97 173 0.88 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_39 - 188 Methyltransf_31 PF13847.1 152 9.9e-07 21.8 0.0 1 1 8.6e-09 1.2e-06 21.6 0.0 5 118 52 156 48 183 0.86 # 40605 # 41168 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 4_3 - 513 DUF3584 PF12128.3 1201 0.0005 10.8 3.6 1 2 1e-06 0.00014 12.6 0.8 304 377 12 86 5 108 0.88 # 869 # 2407 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.584 4_3 - 513 DUF3584 PF12128.3 1201 0.0005 10.8 3.6 2 2 0.098 13 -3.9 0.1 277 304 374 401 357 417 0.48 # 869 # 2407 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.584 1_84 - 1757 Viral_helicase1 PF01443.13 234 0.0013 11.6 0.1 1 2 0.00031 0.041 6.6 0.0 1 23 988 1011 988 1191 0.78 # 75479 # 80749 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_84 - 1757 Viral_helicase1 PF01443.13 234 0.0013 11.6 0.1 2 2 0.0092 1.2 1.8 0.0 184 234 1398 1447 1342 1447 0.69 # 75479 # 80749 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_21 - 266 TIP49 PF06068.8 398 0.00057 11.9 0.1 1 2 0.00014 0.018 7.0 0.0 52 71 99 118 96 135 0.77 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 TIP49 PF06068.8 398 0.00057 11.9 0.1 2 2 0.0031 0.41 2.5 0.0 295 357 181 238 158 250 0.73 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 DEAD PF00270.24 169 0.00059 12.7 0.1 1 1 3.3e-05 0.0044 9.8 0.1 13 64 96 144 83 203 0.68 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_81 - 718 TrwB_AAD_bind PF10412.4 386 2.8e-150 493.5 0.0 1 1 5.2e-152 3.5e-150 493.2 0.0 2 386 172 561 171 561 0.99 # 72610 # 74763 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_63 - 876 TrwB_AAD_bind PF10412.4 386 5.4e-07 21.8 0.1 1 2 4.8e-08 3.2e-06 19.2 0.0 15 53 479 517 470 547 0.80 # 56575 # 59202 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_63 - 876 TrwB_AAD_bind PF10412.4 386 5.4e-07 21.8 0.1 2 2 0.041 2.7 -0.3 0.0 261 317 713 769 684 772 0.92 # 56575 # 59202 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_84 - 1757 AAA_11 PF13086.1 236 0.0003 13.7 2.6 1 1 3.1e-06 0.00042 13.2 0.0 2 75 969 1039 968 1059 0.80 # 75479 # 80749 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_21 - 266 Sigma54_activ_2 PF14532.1 138 0.00036 13.9 0.0 1 1 1.2e-05 0.0016 11.8 0.0 17 111 93 201 82 224 0.69 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_81 - 718 T4SS-DNA_transf PF02534.9 469 9.3e-10 30.9 0.0 1 1 3.9e-11 2.6e-09 29.4 0.0 264 361 382 476 198 500 0.83 # 72610 # 74763 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_63 - 876 T4SS-DNA_transf PF02534.9 469 0.00028 12.8 0.0 1 2 0.0031 0.21 3.3 0.0 105 184 533 606 470 625 0.82 # 56575 # 59202 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_63 - 876 T4SS-DNA_transf PF02534.9 469 0.00028 12.8 0.0 2 2 0.00021 0.014 7.2 0.0 319 378 711 769 662 771 0.90 # 56575 # 59202 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_39 - 188 TIGR00755 TIGR00755 256 8.7e-09 28.0 0.0 1 1 8.8e-11 1.2e-08 27.6 0.0 8 105 29 123 25 134 0.90 # 40605 # 41168 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_27 - 228 MethyltransfD12 PF02086.10 260 0.0007 12.4 0.0 1 2 0.023 3.1 0.4 0.0 178 188 21 31 13 86 0.85 # 32892 # 33575 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_27 - 228 MethyltransfD12 PF02086.10 260 0.0007 12.4 0.0 2 2 3.3e-05 0.0045 9.7 0.0 20 46 163 189 148 211 0.81 # 32892 # 33575 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_21 - 266 ArgK PF03308.11 267 0.00014 14.0 0.0 1 1 2.3e-06 0.0003 12.9 0.0 27 66 95 134 81 136 0.85 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_63 - 876 Pox_A32 PF04665.7 241 0.0011 11.5 0.0 1 1 2.3e-05 0.0031 10.1 0.0 7 38 473 504 469 519 0.85 # 56575 # 59202 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_39 - 188 Methyltransf_23 PF13489.1 161 5.4e-05 16.3 0.0 1 1 4.8e-07 6.4e-05 16.0 0.0 10 119 39 152 11 166 0.79 # 40605 # 41168 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_21 - 266 AAA_24 PF13479.1 213 0.00096 12.1 0.0 1 1 1.3e-05 0.0018 11.2 0.0 5 23 99 117 95 151 0.86 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_100 - 699 NACHT PF05729.7 166 7.1e-05 15.8 0.0 1 2 8.2e-05 0.0055 9.7 0.0 3 28 44 69 42 82 0.90 # 92441 # 94537 # 1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.343 1_100 - 699 NACHT PF05729.7 166 7.1e-05 15.8 0.0 2 2 0.0064 0.43 3.5 0.0 53 96 152 211 139 241 0.77 # 92441 # 94537 # 1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.343 1_21 - 266 NACHT PF05729.7 166 0.00018 14.5 0.4 1 1 6.1e-05 0.0041 10.1 0.4 3 21 100 118 98 218 0.88 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 AAA_25 PF13481.1 194 8.9e-07 21.8 0.1 1 1 1.4e-08 1.8e-06 20.8 0.1 22 65 81 130 60 186 0.70 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_27 - 228 Methyltransf_15 PF09445.5 164 0.00015 14.7 0.1 1 2 0.012 1.7 1.5 0.0 53 80 4 30 2 34 0.91 # 32892 # 33575 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_27 - 228 Methyltransf_15 PF09445.5 164 0.00015 14.7 0.1 2 2 1.7e-05 0.0022 10.9 0.0 3 38 166 202 164 212 0.82 # 32892 # 33575 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_21 - 266 AAA_28 PF13521.1 163 6.7e-05 16.2 1.0 1 2 5.2e-06 0.0007 12.9 0.1 2 47 100 150 99 162 0.68 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 AAA_28 PF13521.1 163 6.7e-05 16.2 1.0 2 2 0.0047 0.62 3.3 0.0 95 135 144 178 131 200 0.71 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_21 - 266 AAA_5 PF07728.9 139 0.00011 15.3 2.4 1 1 2.3e-06 0.0003 13.8 0.7 1 19 99 117 99 192 0.84 # 25723 # 26520 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/dcb3136b-f215-4459-8811-a196d5ed7a70 # Target file: checkm_output/bins/pm2013/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2013/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/dcb3136b-f215-4459-8811-a196d5ed7a70 checkm_output/bins/pm2013/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:44 2020 # [ok]