# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_8 - 188 Methyltransf_12 PF08242.7 99 5.4e-05 16.3 0.0 1 1 1e-06 8.4e-05 15.7 0.0 1 99 55 144 55 144 0.84 # 5500 # 6063 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_4 - 228 UPF0020 PF01170.13 180 2.3e-05 16.6 0.0 1 2 0.00028 0.023 6.8 0.0 103 122 17 36 4 88 0.73 # 2315 # 2998 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_4 - 228 UPF0020 PF01170.13 180 2.3e-05 16.6 0.0 2 2 0.00014 0.011 7.9 0.0 28 48 163 183 158 220 0.71 # 2315 # 2998 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_8 - 188 RrnaAD PF00398.15 262 3.1e-09 28.8 0.0 1 1 4.8e-11 3.9e-09 28.5 0.0 9 113 29 128 24 149 0.89 # 5500 # 6063 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_11 - 176 SSB PF00436.20 104 6.1e-41 131.2 0.3 1 1 9.9e-43 8e-41 130.8 0.3 1 101 6 109 6 112 0.95 # 9290 # 9817 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_8 - 188 Methyltransf_18 PF12847.2 112 3.6e-10 33.1 0.0 1 1 1.8e-11 7.2e-10 32.1 0.0 4 109 53 146 50 148 0.89 # 5500 # 6063 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_4 - 228 Methyltransf_18 PF12847.2 112 0.00025 14.3 0.0 1 1 1.7e-05 0.0007 12.8 0.0 5 61 167 217 163 226 0.75 # 2315 # 2998 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_19 - 1757 UvrD_C_2 PF13538.1 104 1.1e-07 24.5 0.8 1 2 0.013 1.1 2.2 0.0 6 44 1227 1265 1223 1294 0.75 # 16560 # 21830 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_19 - 1757 UvrD_C_2 PF13538.1 104 1.1e-07 24.5 0.8 2 2 5.2e-08 4.2e-06 19.5 0.2 3 102 1341 1444 1339 1446 0.77 # 16560 # 21830 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 3_9 - 107 DUF87 PF01935.12 229 0.0004 12.8 0.0 1 1 7.7e-06 0.00063 12.2 0.0 25 50 74 99 72 103 0.91 # 4147 # 4467 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_9 - 504 AAA_22 PF13401.1 131 4.1e-07 22.8 0.2 1 2 0.00012 0.0049 9.6 0.0 4 26 25 47 20 81 0.76 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 AAA_22 PF13401.1 131 4.1e-07 22.8 0.2 2 2 6.7e-05 0.0027 10.5 0.1 83 115 212 253 196 272 0.73 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 3_9 - 107 AAA_22 PF13401.1 131 0.00085 12.1 0.0 1 1 3.4e-05 0.0014 11.4 0.0 3 27 71 95 66 103 0.86 # 4147 # 4467 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 2_4 - 228 Methyltransf_11 PF08241.7 95 0.00036 13.7 0.0 1 2 0.0026 0.21 4.8 0.0 78 93 53 68 49 70 0.84 # 2315 # 2998 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_4 - 228 Methyltransf_11 PF08241.7 95 0.00036 13.7 0.0 2 2 0.00095 0.077 6.2 0.0 5 55 172 221 168 226 0.83 # 2315 # 2998 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_9 - 504 DNA_pol3_delta2 PF13177.1 162 0.00055 12.2 0.1 1 1 2.4e-05 0.0019 10.5 0.0 23 89 29 96 25 127 0.90 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 AAA_15 PF13175.1 415 3.9e-14 45.0 4.0 1 3 3e-09 2.5e-07 22.6 0.4 3 82 5 84 4 132 0.68 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 AAA_15 PF13175.1 415 3.9e-14 45.0 4.0 2 3 2.8e-09 2.3e-07 22.7 0.0 337 415 185 271 108 271 0.73 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 AAA_15 PF13175.1 415 3.9e-14 45.0 4.0 3 3 0.086 7 -1.9 0.9 46 67 406 427 377 457 0.48 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 2_4 - 228 N6_N4_Mtase PF01555.13 231 3.2e-34 111.0 0.0 1 2 1.6e-15 1.3e-13 43.5 0.0 1 114 21 124 21 139 0.88 # 2315 # 2998 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_4 - 228 N6_N4_Mtase PF01555.13 231 3.2e-34 111.0 0.0 2 2 2.2e-22 1.8e-20 66.0 0.0 169 228 141 200 126 203 0.90 # 2315 # 2998 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_20 - 763 AAA_17 PF13207.1 121 0.00029 14.3 0.0 1 1 2.5e-05 0.001 12.5 0.0 3 27 189 217 187 262 0.68 # 21830 # 24118 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_9 - 504 AAA_17 PF13207.1 121 0.0011 12.4 2.5 1 1 0.00031 0.013 9.0 2.3 3 32 29 53 27 438 0.84 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 AAA_21 PF13304.1 303 3.8e-25 82.0 0.4 1 2 4.6e-27 3.8e-25 82.0 0.4 1 302 27 271 27 273 0.90 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 AAA_21 PF13304.1 303 3.8e-25 82.0 0.4 2 2 0.029 2.4 0.6 0.5 100 124 402 426 335 463 0.47 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 Miro PF08477.8 119 0.00027 14.1 0.0 1 1 1.4e-05 0.0011 12.1 0.0 4 50 30 75 28 92 0.83 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 3_15 - 122 CTP_transf_2 PF01467.21 157 0.00048 12.8 0.0 1 1 7.1e-06 0.00057 12.6 0.0 32 104 7 79 2 97 0.63 # 8090 # 8455 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 3_9 - 107 Zeta_toxin PF06414.7 201 0.00026 12.7 0.1 1 1 5.1e-06 0.00041 12.1 0.1 14 40 70 96 59 102 0.82 # 4147 # 4467 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_9 - 504 SMC_N PF02463.14 220 7.7e-08 24.4 0.5 1 2 1e-07 8.4e-06 17.7 0.1 5 42 6 43 4 74 0.87 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 SMC_N PF02463.14 220 7.7e-08 24.4 0.5 2 2 0.0012 0.098 4.4 0.0 156 186 219 249 216 284 0.85 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 Arch_ATPase PF01637.13 234 8.1e-05 15.0 2.9 1 2 0.0005 0.041 6.1 0.0 22 47 27 51 23 132 0.81 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 Arch_ATPase PF01637.13 234 8.1e-05 15.0 2.9 2 2 0.00012 0.0097 8.2 0.1 105 168 203 270 179 284 0.81 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_20 - 763 AAA_16 PF13191.1 185 3.6e-06 19.7 0.0 1 1 6.3e-07 1.7e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 21830 # 24118 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 3_9 - 107 AAA_16 PF13191.1 185 7.3e-05 15.4 0.0 1 1 7.3e-06 0.0002 14.0 0.0 22 51 70 99 64 104 0.90 # 4147 # 4467 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_9 - 504 AAA_16 PF13191.1 185 0.00056 12.5 0.0 1 2 0.0048 0.13 4.8 0.0 26 48 27 48 11 78 0.76 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 AAA_16 PF13191.1 185 0.00056 12.5 0.0 2 2 0.0033 0.089 5.3 0.0 140 176 206 252 163 262 0.76 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 AAA_23 PF13476.1 202 1.8e-14 47.2 0.9 1 2 3.9e-15 3.1e-13 43.1 0.1 1 88 5 100 5 241 0.74 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 AAA_23 PF13476.1 202 1.8e-14 47.2 0.9 2 2 0.0074 0.6 3.0 0.1 89 173 403 452 305 478 0.65 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 AAA_13 PF13166.1 712 1e-05 16.7 0.2 1 1 2.6e-07 1e-05 16.7 0.2 10 40 19 49 10 99 0.83 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 3_4 - 513 AAA_13 PF13166.1 712 0.00025 12.1 0.1 1 1 6.2e-06 0.00025 12.1 0.1 362 438 6 82 1 102 0.91 # 1134 # 2672 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.588 1_9 - 504 AAA_14 PF13173.1 128 3.8e-05 16.2 0.2 1 2 0.00038 0.031 6.8 0.0 3 27 26 50 24 85 0.77 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 AAA_14 PF13173.1 128 3.8e-05 16.2 0.2 2 2 0.00062 0.05 6.1 0.1 60 107 217 276 185 280 0.74 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 AAA_29 PF13555.1 62 1.8e-07 23.3 0.0 1 1 4.6e-09 3.7e-07 22.3 0.0 18 54 20 57 6 62 0.80 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 AAA PF00004.24 132 1.6e-05 17.7 0.0 1 2 0.00041 0.033 7.0 0.0 2 23 29 50 28 90 0.76 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 AAA PF00004.24 132 1.6e-05 17.7 0.0 2 2 0.00039 0.032 7.1 0.0 52 111 214 267 182 279 0.73 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 2_8 - 188 N6_Mtase PF02384.11 311 9.9e-05 14.1 0.0 1 2 1.7e-05 0.0014 10.3 0.0 28 64 32 68 21 83 0.88 # 5500 # 6063 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_8 - 188 N6_Mtase PF02384.11 311 9.9e-05 14.1 0.0 2 2 0.014 1.1 0.7 0.0 127 137 114 124 103 134 0.82 # 5500 # 6063 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_20 - 763 TraG-D_C PF12696.2 128 6.6e-21 67.1 0.0 1 1 1.5e-22 1.2e-20 66.3 0.0 1 127 419 541 419 542 0.86 # 21830 # 24118 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 2_8 - 188 Methyltransf_26 PF13659.1 117 2.3e-13 42.8 0.0 1 1 1.1e-14 4.4e-13 42.0 0.0 2 114 52 147 51 150 0.91 # 5500 # 6063 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_4 - 228 Methyltransf_26 PF13659.1 117 2.1e-12 39.8 0.1 1 2 2.3e-07 9.5e-06 18.3 0.0 57 114 7 71 2 74 0.70 # 2315 # 2998 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_4 - 228 Methyltransf_26 PF13659.1 117 2.1e-12 39.8 0.1 2 2 9.7e-08 3.9e-06 19.5 0.1 4 45 167 207 164 222 0.82 # 2315 # 2998 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_19 - 1757 AAA_30 PF13604.1 196 1.9e-44 144.2 14.4 1 2 3.9e-05 0.0011 11.2 3.6 7 146 420 551 416 561 0.81 # 16560 # 21830 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_19 - 1757 AAA_30 PF13604.1 196 1.9e-44 144.2 14.4 2 2 1.2e-43 3.3e-42 136.9 1.5 1 186 968 1156 968 1160 0.94 # 16560 # 21830 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_9 - 504 AAA_30 PF13604.1 196 4.8e-05 15.6 0.0 1 2 0.00019 0.0051 9.0 0.0 18 42 25 49 23 58 0.86 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 AAA_30 PF13604.1 196 4.8e-05 15.6 0.0 2 2 0.0061 0.17 4.0 0.0 81 105 209 233 201 246 0.72 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_20 - 763 AAA_30 PF13604.1 196 0.0005 12.3 0.0 1 1 4.1e-05 0.0011 11.2 0.0 21 57 188 224 180 230 0.85 # 21830 # 24118 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 3_9 - 107 FtsK_SpoIIIE PF01580.13 205 3.8e-06 19.1 0.0 1 1 5.6e-08 4.5e-06 18.8 0.0 20 66 52 100 35 103 0.79 # 4147 # 4467 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 2_8 - 188 MTS PF05175.9 170 4.2e-09 28.6 0.0 1 1 7.1e-11 5.8e-09 28.1 0.0 31 141 50 149 41 165 0.84 # 5500 # 6063 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_9 - 504 MukB PF04310.7 227 7.8e-05 14.7 0.0 1 1 2.1e-06 0.00017 13.6 0.0 22 63 20 61 6 68 0.86 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 2_8 - 188 Methyltrans_SAM PF10672.4 286 0.00075 11.0 0.0 1 1 1.4e-05 0.0011 10.4 0.0 196 261 113 173 99 177 0.78 # 5500 # 6063 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_9 - 504 ABC_tran PF00005.22 137 3.3e-05 16.8 0.0 1 1 1.2e-06 9.4e-05 15.4 0.0 15 38 29 52 15 81 0.87 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 2_4 - 228 Cons_hypoth95 PF03602.10 183 7.1e-06 18.1 0.0 1 2 0.00049 0.039 5.9 0.0 112 128 18 34 9 81 0.66 # 2315 # 2998 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_4 - 228 Cons_hypoth95 PF03602.10 183 7.1e-06 18.1 0.0 2 2 2.2e-05 0.0018 10.3 0.0 41 67 162 188 141 218 0.80 # 2315 # 2998 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_19 - 1757 AAA_19 PF13245.1 76 1.4e-07 23.9 2.1 1 1 5.6e-09 4.5e-07 22.2 0.5 7 76 981 1047 974 1047 0.74 # 16560 # 21830 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_20 - 763 AAA_10 PF12846.2 304 1.2e-10 33.8 0.0 1 1 5.4e-11 2.2e-09 29.7 0.0 3 296 187 494 186 500 0.68 # 21830 # 24118 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 3_9 - 107 AAA_10 PF12846.2 304 4.7e-05 15.5 0.0 1 2 0.0053 0.21 3.5 0.0 273 289 25 41 10 54 0.78 # 4147 # 4467 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 3_9 - 107 AAA_10 PF12846.2 304 4.7e-05 15.5 0.0 2 2 4.4e-05 0.0018 10.3 0.0 2 24 73 95 72 100 0.86 # 4147 # 4467 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 2_8 - 188 Methyltransf_31 PF13847.1 152 3.3e-06 19.4 0.0 1 1 5e-08 4.1e-06 19.1 0.0 5 119 52 162 48 183 0.83 # 5500 # 6063 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 3_4 - 513 DUF3584 PF12128.3 1201 0.0041 7.0 6.0 1 2 6.3e-06 0.00051 10.0 2.1 304 377 12 86 5 100 0.88 # 1134 # 2672 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.588 3_4 - 513 DUF3584 PF12128.3 1201 0.0041 7.0 6.0 2 2 0.083 6.7 -3.7 0.1 278 304 375 401 353 418 0.49 # 1134 # 2672 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.588 1_19 - 1757 Viral_helicase1 PF01443.13 234 0.00046 12.3 0.1 1 2 0.00026 0.021 6.9 0.0 1 23 988 1012 988 1195 0.72 # 16560 # 21830 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_19 - 1757 Viral_helicase1 PF01443.13 234 0.00046 12.3 0.1 2 2 0.0066 0.53 2.3 0.0 171 234 1387 1447 1342 1447 0.63 # 16560 # 21830 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_9 - 504 DEAD PF00270.24 169 0.00095 11.3 0.1 1 2 0.082 6.7 -1.2 0.0 18 33 29 44 21 56 0.80 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 DEAD PF00270.24 169 0.00095 11.3 0.1 2 2 5.1e-05 0.0041 9.2 0.0 104 150 206 252 188 272 0.80 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_20 - 763 TrwB_AAD_bind PF10412.4 386 2.3e-150 493.0 0.0 1 1 7e-152 2.8e-150 492.7 0.0 2 386 172 561 171 561 0.99 # 21830 # 24118 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 3_9 - 107 TrwB_AAD_bind PF10412.4 386 0.0002 12.6 0.0 1 2 0.038 1.5 -0.2 0.0 295 331 25 61 17 68 0.71 # 4147 # 4467 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 3_9 - 107 TrwB_AAD_bind PF10412.4 386 0.0002 12.6 0.0 2 2 1.3e-05 0.00051 11.3 0.0 5 42 62 99 58 103 0.88 # 4147 # 4467 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_19 - 1757 AAA_11 PF13086.1 236 0.00017 13.8 0.0 1 1 2.1e-06 0.00017 13.8 0.0 2 75 969 1039 968 1059 0.81 # 16560 # 21830 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_20 - 763 T4SS-DNA_transf PF02534.9 469 4e-10 31.4 0.0 1 1 1.1e-11 8.9e-10 30.2 0.0 250 361 362 476 198 500 0.76 # 21830 # 24118 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 2_8 - 188 TIGR00755 TIGR00755 256 5.2e-09 28.0 0.0 1 1 8.7e-11 7e-09 27.6 0.0 8 105 29 123 25 134 0.91 # 5500 # 6063 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_4 - 228 MethyltransfD12 PF02086.10 260 0.0008 11.5 0.0 1 2 0.016 1.3 1.0 0.0 175 188 18 31 8 90 0.83 # 2315 # 2998 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_4 - 228 MethyltransfD12 PF02086.10 260 0.0008 11.5 0.0 2 2 8.5e-05 0.0069 8.4 0.0 20 46 163 189 150 213 0.81 # 2315 # 2998 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 3_9 - 107 Pox_A32 PF04665.7 241 0.00014 13.8 0.0 1 2 0.037 3 -0.4 0.0 3 28 42 66 41 70 0.72 # 4147 # 4467 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 3_9 - 107 Pox_A32 PF04665.7 241 0.00014 13.8 0.0 2 2 4.1e-06 0.00033 12.6 0.0 7 42 66 101 60 104 0.89 # 4147 # 4467 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 3_9 - 107 RNA_helicase PF00910.17 107 0.00011 15.1 0.0 1 1 6.3e-06 0.00026 13.8 0.0 1 29 75 103 75 106 0.91 # 4147 # 4467 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_9 - 504 RNA_helicase PF00910.17 107 0.00028 13.7 0.6 1 1 1.6e-05 0.00064 12.5 0.1 2 56 29 81 28 87 0.74 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 2_4 - 228 Methyltransf_15 PF09445.5 164 0.00031 12.9 0.0 1 2 0.042 3.4 -0.2 0.0 53 79 4 29 2 33 0.90 # 2315 # 2998 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_4 - 228 Methyltransf_15 PF09445.5 164 0.00031 12.9 0.0 2 2 2.1e-05 0.0017 10.5 0.0 3 31 166 194 164 209 0.87 # 2315 # 2998 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_9 - 504 AAA_5 PF07728.9 139 0.00068 12.0 0.0 1 2 6.9e-05 0.0056 9.0 0.0 3 56 29 82 28 134 0.78 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_9 - 504 AAA_5 PF07728.9 139 0.00068 12.0 0.0 2 2 0.041 3.3 0.1 0.0 65 89 221 246 179 248 0.84 # 8216 # 9727 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7f9bc0d7-1b0d-4219-93a3-be0ac016b1cc # Target file: checkm_output/bins/pm2008/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2008/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7f9bc0d7-1b0d-4219-93a3-be0ac016b1cc checkm_output/bins/pm2008/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:43 2020 # [ok]