# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_25 - 228 UPF0020 PF01170.13 180 2.2e-05 17.4 0.0 1 2 0.00049 0.066 6.1 0.0 103 117 17 31 4 72 0.83 # 13605 # 14288 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_25 - 228 UPF0020 PF01170.13 180 2.2e-05 17.4 0.0 2 2 4.7e-05 0.0063 9.4 0.0 28 54 163 189 158 223 0.65 # 13605 # 14288 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_12 - 707 ABC_ATPase PF09818.4 448 0.00026 12.9 0.2 1 2 0.00092 0.12 4.1 0.0 241 265 491 516 477 523 0.90 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_12 - 707 ABC_ATPase PF09818.4 448 0.00026 12.9 0.2 2 2 0.00018 0.024 6.5 0.0 304 366 586 652 574 681 0.71 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_12 - 707 DUF87 PF01935.12 229 0.00034 13.8 0.1 1 1 2.6e-06 0.00034 13.8 0.1 26 61 498 531 481 532 0.80 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_12 - 707 AAA_22 PF13401.1 131 4.6e-05 16.9 0.3 1 1 2.3e-06 0.00031 14.2 0.3 7 106 498 642 492 667 0.66 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 2_25 - 228 Methyltransf_11 PF08241.7 95 0.00072 13.4 0.0 1 2 0.0055 0.74 3.7 0.0 79 93 54 68 46 70 0.83 # 13605 # 14288 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_25 - 228 Methyltransf_11 PF08241.7 95 0.00072 13.4 0.0 2 2 0.00048 0.064 7.1 0.0 5 58 172 224 168 227 0.86 # 13605 # 14288 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_25 - 228 N6_N4_Mtase PF01555.13 231 1.4e-34 112.9 0.0 1 1 2.7e-34 3.7e-32 105.0 0.0 1 228 21 200 21 203 0.88 # 13605 # 14288 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_12 - 707 AAA_17 PF13207.1 121 7.4e-08 26.6 0.0 1 1 1.4e-09 1.9e-07 25.3 0.0 1 53 497 552 497 601 0.70 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_12 - 707 AAA_21 PF13304.1 303 1.7e-09 31.3 0.1 1 1 6.9e-09 9.2e-07 22.3 0.1 2 297 498 662 497 667 0.87 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_12 - 707 MobB PF03205.9 140 0.0011 12.0 0.4 1 1 2.2e-05 0.003 10.6 0.1 2 21 497 516 496 524 0.87 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_12 - 707 SMC_N PF02463.14 220 6.8e-09 28.5 1.5 1 2 0.0011 0.15 4.6 0.3 26 42 497 513 485 526 0.83 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_12 - 707 SMC_N PF02463.14 220 6.8e-09 28.5 1.5 2 2 3.1e-09 4.1e-07 22.7 0.0 136 210 605 675 516 682 0.74 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_12 - 707 AAA_16 PF13191.1 185 0.00031 14.1 0.0 1 1 5.2e-06 0.00069 12.9 0.0 24 106 495 587 489 660 0.57 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_12 - 707 AAA_18 PF13238.1 129 7.9e-06 19.5 1.9 1 3 9.2e-07 0.00012 15.7 0.5 1 20 498 517 498 534 0.77 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_12 - 707 AAA_18 PF13238.1 129 7.9e-06 19.5 1.9 2 3 0.094 13 -0.5 0.0 73 100 523 549 519 580 0.79 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_12 - 707 AAA_18 PF13238.1 129 7.9e-06 19.5 1.9 3 3 0.046 6.2 0.5 0.0 47 91 632 672 614 682 0.79 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 4_3 - 513 AAA_13 PF13166.1 712 0.00083 11.1 2.1 1 2 4.3e-06 0.00058 11.7 0.4 362 438 6 82 1 90 0.91 # 673 # 2211 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.587 4_3 - 513 AAA_13 PF13166.1 712 0.00083 11.1 2.1 2 2 0.087 12 -2.6 0.1 432 464 379 411 340 443 0.60 # 673 # 2211 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.587 3_12 - 707 AAA_29 PF13555.1 62 6.3e-05 15.8 0.4 1 1 1.5e-06 0.00021 14.2 0.1 22 40 494 512 486 525 0.83 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_12 - 707 DUF258 PF03193.11 161 3.1e-05 16.5 0.7 1 2 2.2e-06 0.0003 13.3 0.0 26 66 485 526 467 531 0.79 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_12 - 707 DUF258 PF03193.11 161 3.1e-05 16.5 0.7 2 2 0.019 2.6 0.5 0.0 23 49 581 607 561 608 0.81 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 2_25 - 228 Methyltransf_26 PF13659.1 117 3.2e-11 36.6 0.1 1 2 6.7e-07 9e-05 15.8 0.0 57 114 7 71 2 74 0.68 # 13605 # 14288 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_25 - 228 Methyltransf_26 PF13659.1 117 3.2e-11 36.6 0.1 2 2 8.3e-08 1.1e-05 18.8 0.0 4 45 167 207 164 224 0.81 # 13605 # 14288 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_12 - 707 ABC_tran PF00005.22 137 4.5e-37 120.7 0.1 1 1 6.8e-39 9.1e-37 119.7 0.1 1 137 485 634 485 634 0.89 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 2_25 - 228 Cons_hypoth95 PF03602.10 183 3.7e-05 16.5 0.0 1 2 0.0006 0.08 5.6 0.0 112 127 18 33 9 80 0.68 # 13605 # 14288 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_25 - 228 Cons_hypoth95 PF03602.10 183 3.7e-05 16.5 0.0 2 2 5.6e-05 0.0075 9.0 0.0 42 63 163 184 145 221 0.76 # 13605 # 14288 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_12 - 707 AAA_10 PF12846.2 304 0.00025 13.8 0.1 1 2 1.4e-05 0.0018 11.0 0.0 6 25 500 519 497 532 0.79 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_12 - 707 AAA_10 PF12846.2 304 0.00025 13.8 0.1 2 2 0.03 4 0.0 0.0 217 257 620 659 594 674 0.70 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_12 - 707 SbcCD_C PF13558.1 90 0.00072 12.8 0.1 1 1 5.2e-05 0.007 9.7 0.1 61 86 621 646 592 650 0.81 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 4_3 - 513 DUF3584 PF12128.3 1201 0.012 6.1 6.8 1 2 6.1e-06 0.00081 10.0 1.8 304 377 12 86 5 97 0.88 # 673 # 2211 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.587 4_3 - 513 DUF3584 PF12128.3 1201 0.012 6.1 6.8 2 2 0.07 9.4 -3.4 0.2 277 303 374 400 336 417 0.50 # 673 # 2211 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.587 2_8 - 283 Methyltransf_27 PF13708.1 194 5.1e-65 211.9 0.0 1 1 5.3e-67 7.1e-65 211.5 0.0 2 194 85 278 84 278 0.96 # 5712 # 6560 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 2_25 - 228 MethyltransfD12 PF02086.10 260 0.00062 12.6 0.0 1 2 0.027 3.6 0.2 0.1 175 188 18 31 8 38 0.80 # 13605 # 14288 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_25 - 228 MethyltransfD12 PF02086.10 260 0.00062 12.6 0.0 2 2 3.3e-05 0.0044 9.8 0.0 20 46 163 189 148 198 0.78 # 13605 # 14288 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_12 - 707 ArgK PF03308.11 267 0.00032 12.8 0.0 1 1 4.4e-06 0.00059 11.9 0.0 15 52 481 518 473 528 0.84 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_12 - 707 RNA_helicase PF00910.17 107 0.0015 12.0 0.8 1 2 0.00027 0.036 7.6 0.0 3 19 500 516 498 530 0.86 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_12 - 707 RNA_helicase PF00910.17 107 0.0015 12.0 0.8 2 2 0.018 2.4 1.7 0.1 48 104 622 676 618 678 0.77 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_15 - 214 TIGR00922 TIGR00922 172 0.00021 14.2 0.0 1 1 1.9e-06 0.00025 13.9 0.0 54 104 105 155 56 176 0.87 # 20049 # 20690 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 3_12 - 707 AAA_25 PF13481.1 194 0.00028 13.6 0.0 1 2 2.3e-05 0.0031 10.2 0.0 29 50 491 512 482 532 0.88 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 3_12 - 707 AAA_25 PF13481.1 194 0.00028 13.6 0.0 2 2 0.031 4.1 0.0 0.0 134 188 617 662 586 663 0.76 # 7720 # 9840 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.373 2_25 - 228 Methyltransf_15 PF09445.5 164 0.0009 12.1 0.0 1 2 0.042 5.6 -0.2 0.0 53 79 4 29 2 33 0.90 # 13605 # 14288 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_25 - 228 Methyltransf_15 PF09445.5 164 0.0009 12.1 0.0 2 2 3.7e-05 0.005 9.7 0.0 2 31 165 194 164 208 0.86 # 13605 # 14288 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bc530af6-11d3-48bc-8de1-71770fee9006 # Target file: checkm_output/bins/pm2003/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2003/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bc530af6-11d3-48bc-8de1-71770fee9006 checkm_output/bins/pm2003/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:39 2020 # [ok]