# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_53 - 188 UPF0020 PF01170.13 180 1.5e-05 17.8 0.0 1 1 1.5e-06 8.9e-05 15.3 0.0 19 54 41 78 39 138 0.74 # 35625 # 36188 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_40 - 63 UPF0020 PF01170.13 180 0.0007 12.4 0.0 1 1 1.1e-05 0.0007 12.4 0.0 103 120 17 34 4 53 0.80 # 28079 # 28267 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_53 - 188 RrnaAD PF00398.15 262 3.1e-07 22.8 0.0 1 1 3.4e-09 4.1e-07 22.4 0.0 9 113 29 128 26 140 0.90 # 35625 # 36188 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_33 - 209 MipZ PF09140.6 261 2.1e-21 69.3 0.5 1 2 1.2e-12 1.4e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 21198 # 21824 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_33 - 209 MipZ PF09140.6 261 2.1e-21 69.3 0.5 2 2 1.6e-12 1.9e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 21198 # 21824 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_33 - 209 YhjQ PF06564.7 244 2.8e-05 16.7 0.3 1 2 1.8e-06 0.00022 13.8 0.3 4 38 3 37 1 50 0.89 # 21198 # 21824 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_33 - 209 YhjQ PF06564.7 244 2.8e-05 16.7 0.3 2 2 0.029 3.6 0.0 0.0 108 144 69 103 44 113 0.78 # 21198 # 21824 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_54 - 181 SSB PF00436.20 104 5.4e-42 135.1 0.4 1 1 5.5e-44 6.8e-42 134.8 0.4 1 99 6 105 6 113 0.97 # 37018 # 37560 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_53 - 188 Methyltransf_18 PF12847.2 112 1.2e-07 25.5 0.0 1 1 1.6e-09 1.9e-07 24.8 0.0 2 107 51 144 50 146 0.92 # 35625 # 36188 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_109 - 1754 UvrD_C_2 PF13538.1 104 1.8e-07 24.5 0.3 1 1 9.2e-09 1.1e-06 21.9 0.1 3 102 1340 1443 1333 1445 0.75 # 77625 # 82886 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_88 - 880 DUF87 PF01935.12 229 2.9e-06 20.4 0.0 1 2 0.056 6.8 -0.4 0.2 113 171 312 362 304 396 0.60 # 58015 # 60654 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_88 - 880 DUF87 PF01935.12 229 2.9e-06 20.4 0.0 2 2 1.6e-07 1.9e-05 17.7 0.0 26 222 484 674 479 681 0.82 # 58015 # 60654 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_109 - 1754 AAA_22 PF13401.1 131 8.5e-05 15.9 0.0 1 2 0.0057 0.7 3.2 0.0 89 121 505 536 468 538 0.72 # 77625 # 82886 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_109 - 1754 AAA_22 PF13401.1 131 8.5e-05 15.9 0.0 2 2 0.00011 0.013 8.8 0.0 3 29 986 1012 983 1065 0.79 # 77625 # 82886 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_33 - 209 SRP54 PF00448.17 196 3.1e-07 23.2 0.1 1 1 1.5e-08 1.8e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 21198 # 21824 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_41 - 177 N6_N4_Mtase PF01555.13 231 1.8e-25 83.0 0.0 1 2 2.7e-05 0.0017 11.0 0.0 42 113 1 73 1 82 0.86 # 28251 # 28781 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.614 1_41 - 177 N6_N4_Mtase PF01555.13 231 1.8e-25 83.0 0.0 2 2 2.2e-23 1.3e-21 70.3 0.0 169 227 91 149 75 153 0.92 # 28251 # 28781 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.614 1_40 - 63 N6_N4_Mtase PF01555.13 231 0.00018 14.2 0.0 1 1 3.3e-06 0.0002 14.0 0.0 1 30 21 49 21 55 0.77 # 28079 # 28267 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_33 - 209 AAA_17 PF13207.1 121 2.7e-05 18.2 0.0 1 1 4.2e-07 5.2e-05 17.3 0.0 9 77 11 84 9 205 0.76 # 21198 # 21824 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_33 - 209 MobB PF03205.9 140 7.2e-05 15.7 0.1 1 1 1.6e-06 0.0002 14.3 0.0 10 42 11 41 1 46 0.79 # 21198 # 21824 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_33 - 209 ArsA_ATPase PF02374.10 305 3.8e-08 25.8 0.4 1 2 1.2e-09 1.4e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 21198 # 21824 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_33 - 209 ArsA_ATPase PF02374.10 305 3.8e-08 25.8 0.4 2 2 0.053 6.5 -1.2 0.0 121 135 69 85 47 86 0.75 # 21198 # 21824 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_33 - 209 VirC1 PF07015.6 231 3.4e-09 29.3 0.0 1 1 5.9e-11 7.2e-09 28.2 0.0 3 172 2 164 1 206 0.75 # 21198 # 21824 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_33 - 209 Fer4_NifH PF00142.13 273 9.1e-05 14.9 0.0 1 1 2.3e-06 0.00028 13.3 0.0 8 38 9 39 2 46 0.89 # 21198 # 21824 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_108 - 771 AAA_16 PF13191.1 185 3.5e-06 20.3 0.0 1 1 1.4e-07 1.7e-05 18.0 0.0 20 56 181 218 179 254 0.78 # 75313 # 77625 # 1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_33 - 209 CbiA PF01656.18 195 2.9e-22 72.2 0.0 1 1 4.7e-24 5.8e-22 71.2 0.0 1 154 3 137 3 178 0.78 # 21198 # 21824 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_53 - 188 N6_Mtase PF02384.11 311 0.00012 14.4 0.0 1 2 2.6e-05 0.0032 9.7 0.0 28 71 32 75 21 93 0.82 # 35625 # 36188 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_53 - 188 N6_Mtase PF02384.11 311 0.00012 14.4 0.0 2 2 0.0056 0.69 2.0 0.0 124 138 111 125 95 133 0.81 # 35625 # 36188 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_108 - 771 TraG-D_C PF12696.2 128 8.4e-20 64.1 0.0 1 1 1.6e-21 1.9e-19 63.0 0.0 1 127 419 541 419 542 0.88 # 75313 # 77625 # 1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_33 - 209 AAA_31 PF13614.1 157 5.2e-06 19.7 0.0 1 2 2.5e-07 3.1e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 21198 # 21824 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_33 - 209 AAA_31 PF13614.1 157 5.2e-06 19.7 0.0 2 2 0.055 6.7 -0.2 0.0 109 127 68 86 62 113 0.68 # 21198 # 21824 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_53 - 188 Methyltransf_26 PF13659.1 117 2.2e-13 43.5 0.1 1 1 8.8e-15 3.6e-13 42.8 0.1 2 111 52 144 51 148 0.90 # 35625 # 36188 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_41 - 177 Methyltransf_26 PF13659.1 117 6.7e-06 19.4 0.1 1 1 3.6e-07 1.5e-05 18.2 0.1 4 44 117 156 114 171 0.80 # 28251 # 28781 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.614 1_40 - 63 Methyltransf_26 PF13659.1 117 1.3e-05 18.4 0.0 1 1 3.2e-07 1.3e-05 18.4 0.0 61 102 11 51 2 59 0.66 # 28079 # 28267 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_109 - 1754 AAA_30 PF13604.1 196 2.6e-45 147.5 7.6 1 2 4.7e-07 5.7e-05 15.9 1.0 9 126 424 536 422 561 0.86 # 77625 # 82886 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_109 - 1754 AAA_30 PF13604.1 196 2.6e-45 147.5 7.6 2 2 4.9e-43 6e-41 133.3 0.8 2 186 971 1158 970 1162 0.94 # 77625 # 82886 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_88 - 880 FtsK_SpoIIIE PF01580.13 205 0.00014 14.6 0.0 1 1 2.7e-06 0.00033 13.3 0.0 39 63 480 506 466 508 0.85 # 58015 # 60654 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_53 - 188 MTS PF05175.9 170 1.3e-09 30.8 0.0 1 1 1.5e-11 1.8e-09 30.3 0.0 24 142 43 150 38 170 0.84 # 35625 # 36188 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_109 - 1754 AAA_19 PF13245.1 76 4.9e-07 22.7 0.8 1 1 8.1e-09 4.9e-07 22.7 0.8 8 74 984 1047 976 1050 0.71 # 77625 # 82886 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_33 - 209 AAA_19 PF13245.1 76 0.00069 12.6 0.1 1 2 0.00019 0.012 8.6 0.0 20 48 11 35 9 44 0.84 # 21198 # 21824 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_33 - 209 AAA_19 PF13245.1 76 0.00069 12.6 0.1 2 2 0.044 2.7 1.1 0.0 42 62 135 155 118 180 0.75 # 21198 # 21824 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_53 - 188 Methyltransf_2 PF00891.13 242 0.0014 11.0 0.0 1 1 1.7e-05 0.0021 10.4 0.0 111 159 60 110 40 119 0.83 # 35625 # 36188 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_88 - 880 AAA_10 PF12846.2 304 7.1e-46 150.1 0.0 1 1 3.7e-47 1.1e-45 149.5 0.0 1 294 481 773 481 779 0.85 # 58015 # 60654 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_108 - 771 AAA_10 PF12846.2 304 2.6e-09 30.0 0.0 1 2 2e-05 0.00062 12.4 0.0 3 43 187 227 186 260 0.92 # 75313 # 77625 # 1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_108 - 771 AAA_10 PF12846.2 304 2.6e-09 30.0 0.0 2 2 2.3e-06 6.9e-05 15.5 0.0 201 296 398 494 282 499 0.85 # 75313 # 77625 # 1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_33 - 209 AAA_10 PF12846.2 304 0.00019 14.1 0.0 1 1 1e-05 0.00031 13.4 0.0 11 39 11 39 3 67 0.90 # 21198 # 21824 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_27 - 132 AAA_10 PF12846.2 304 0.00093 11.8 0.0 1 2 0.00027 0.0083 8.7 0.0 241 264 12 35 9 45 0.89 # 17712 # 18107 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.548 1_27 - 132 AAA_10 PF12846.2 304 0.00093 11.8 0.0 2 2 0.054 1.6 1.2 0.0 209 235 104 128 68 130 0.72 # 17712 # 18107 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.548 1_16 - 189 NodS PF05401.6 201 0.001 11.6 0.0 1 2 0.051 6.2 -0.7 0.0 42 154 32 57 17 65 0.62 # 10560 # 11126 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.679 1_16 - 189 NodS PF05401.6 201 0.001 11.6 0.0 2 2 3.2e-05 0.004 9.7 0.0 25 70 97 142 89 170 0.84 # 10560 # 11126 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.679 1_27 - 132 Zot PF05707.7 193 0.00032 13.4 0.0 1 1 4.7e-06 0.00058 12.5 0.0 98 127 5 35 1 46 0.82 # 17712 # 18107 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.548 1_108 - 771 TrwB_AAD_bind PF10412.4 386 8.1e-149 488.5 0.0 1 1 1.7e-150 1e-148 488.2 0.0 2 386 172 561 171 561 0.99 # 75313 # 77625 # 1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_88 - 880 TrwB_AAD_bind PF10412.4 386 1.9e-05 16.6 0.2 1 1 8e-07 4.9e-05 15.2 0.0 16 91 482 553 474 569 0.71 # 58015 # 60654 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_109 - 1754 AAA_11 PF13086.1 236 1.9e-05 17.5 2.7 1 2 3.8e-07 4.6e-05 16.2 0.0 2 72 971 1038 970 1065 0.83 # 77625 # 82886 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_109 - 1754 AAA_11 PF13086.1 236 1.9e-05 17.5 2.7 2 2 0.033 4.1 0.0 0.0 3 35 1182 1213 1180 1339 0.70 # 77625 # 82886 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_108 - 771 T4SS-DNA_transf PF02534.9 469 1.2e-08 27.1 0.0 1 2 0.035 4.2 -1.1 0.0 128 199 260 330 249 359 0.73 # 75313 # 77625 # 1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_108 - 771 T4SS-DNA_transf PF02534.9 469 1.2e-08 27.1 0.0 2 2 3.4e-10 4.1e-08 25.3 0.0 275 393 393 507 363 559 0.74 # 75313 # 77625 # 1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_53 - 188 TIGR00755 TIGR00755 256 7.8e-08 24.7 0.0 1 1 9e-10 1.1e-07 24.2 0.0 8 105 29 123 26 128 0.90 # 35625 # 36188 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_88 - 880 Pox_A32 PF04665.7 241 9.1e-05 15.0 0.0 1 1 1.5e-06 0.00019 14.0 0.0 6 40 474 508 470 523 0.82 # 58015 # 60654 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_33 - 209 AAA_25 PF13481.1 194 0.00016 14.3 0.1 1 1 3.1e-06 0.00038 13.1 0.0 42 87 10 44 3 90 0.78 # 21198 # 21824 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/05ebfcc0-e09b-41f0-aaed-7384f1e3f3f7 # Target file: checkm_output/bins/pm2001/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2001/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/05ebfcc0-e09b-41f0-aaed-7384f1e3f3f7 checkm_output/bins/pm2001/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:41 2020 # [ok]