# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_43 - 389 MipZ PF09140.6 261 1.6e-06 20.2 0.1 1 2 8.4e-08 8.1e-06 17.9 0.0 3 47 109 153 107 168 0.90 # 31554 # 32720 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 1_43 - 389 MipZ PF09140.6 261 1.6e-06 20.2 0.1 2 2 0.036 3.4 -0.6 0.0 88 128 224 264 198 274 0.77 # 31554 # 32720 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 3_16 - 150 UvrD_C_2 PF13538.1 104 0.00026 14.0 0.0 1 1 3.5e-06 0.00034 13.7 0.0 13 80 66 137 56 149 0.63 # 11190 # 11639 # 1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_11 - 440 DUF87 PF01935.12 229 6.5e-05 15.7 0.4 1 1 1.3e-06 0.00013 14.7 0.2 24 47 163 186 162 193 0.91 # 6737 # 8056 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_43 - 389 ArsA_ATPase PF02374.10 305 1.7e-06 20.1 0.0 1 2 1.2e-06 0.00011 14.1 0.0 9 40 115 147 109 154 0.90 # 31554 # 32720 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 1_43 - 389 ArsA_ATPase PF02374.10 305 1.7e-06 20.1 0.0 2 2 0.0022 0.21 3.4 0.0 125 136 233 244 223 252 0.89 # 31554 # 32720 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 1_43 - 389 VirC1 PF07015.6 231 9.2e-06 17.7 0.1 1 2 2.5e-05 0.0024 9.8 0.0 4 42 109 147 107 153 0.91 # 31554 # 32720 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 1_43 - 389 VirC1 PF07015.6 231 9.2e-06 17.7 0.1 2 2 0.00053 0.052 5.4 0.0 100 139 251 290 217 321 0.72 # 31554 # 32720 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 1_11 - 440 Arch_ATPase PF01637.13 234 0.0008 12.0 0.0 1 1 1.4e-05 0.0013 11.3 0.0 30 131 172 265 150 273 0.79 # 6737 # 8056 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_43 - 389 CbiA PF01656.18 195 5.1e-33 107.0 0.0 1 1 7.1e-35 6.9e-33 106.5 0.0 1 188 109 333 109 340 0.76 # 31554 # 32720 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 1_43 - 389 AAA_31 PF13614.1 157 2.8e-06 20.2 0.1 1 2 7.8e-06 0.00076 12.3 0.0 2 49 108 155 107 179 0.86 # 31554 # 32720 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 1_43 - 389 AAA_31 PF13614.1 157 2.8e-06 20.2 0.1 2 2 0.0009 0.087 5.6 0.0 115 151 228 267 211 271 0.80 # 31554 # 32720 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 1_11 - 440 AAA_30 PF13604.1 196 0.00046 12.6 0.7 1 3 0.063 6.1 -0.8 0.0 47 72 61 86 53 96 0.91 # 6737 # 8056 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_11 - 440 AAA_30 PF13604.1 196 0.00046 12.6 0.7 2 3 0.00015 0.015 7.8 0.1 16 63 160 204 155 214 0.70 # 6737 # 8056 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_11 - 440 AAA_30 PF13604.1 196 0.00046 12.6 0.7 3 3 0.014 1.3 1.4 0.0 16 70 225 275 213 277 0.76 # 6737 # 8056 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_30 - 211 KH_4 PF13083.1 73 0.00031 13.3 0.0 1 2 0.027 2.7 0.7 0.0 19 42 11 33 3 35 0.76 # 21059 # 21691 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_30 - 211 KH_4 PF13083.1 73 0.00031 13.3 0.0 2 2 3.6e-05 0.0035 9.9 0.0 18 45 157 186 147 187 0.83 # 21059 # 21691 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_11 - 440 ABC_tran PF00005.22 137 0.00033 13.8 0.1 1 1 8.6e-06 0.00083 12.5 0.1 6 35 157 186 155 209 0.91 # 6737 # 8056 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_11 - 440 ATP-synt_ab PF00006.20 215 2.3e-77 252.1 0.0 1 1 3.1e-79 3e-77 251.7 0.0 2 215 149 358 148 358 0.99 # 6737 # 8056 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_12 - 150 RA PF00788.18 93 0.00071 13.0 0.0 1 1 2.2e-05 0.0022 11.4 0.0 26 68 3 46 1 54 0.88 # 7633 # 8082 # 1 # ID=2_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 1_11 - 440 AAA_25 PF13481.1 194 3.4e-05 16.2 0.2 1 1 8.4e-07 8.1e-05 14.9 0.0 24 157 151 267 135 285 0.69 # 6737 # 8056 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d1ad34ac-8953-4803-9cb6-4b4f6c3b5eb0 # Target file: checkm_output/bins/pm2/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d1ad34ac-8953-4803-9cb6-4b4f6c3b5eb0 checkm_output/bins/pm2/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:34 2020 # [ok]