# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 332 cobW PF02492.14 178 2.7e-06 19.9 0.0 1 1 4.6e-08 5e-06 19.1 0.0 3 44 161 201 159 257 0.79 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_7 - 332 Parvo_NS1 PF01057.12 272 0.00094 11.1 0.0 1 1 1.4e-05 0.0016 10.4 0.0 104 138 148 182 140 188 0.90 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_10 - 1079 Torsin PF06309.6 127 2.3e-05 17.3 0.0 1 1 6.1e-07 6.8e-05 15.8 0.0 19 85 460 526 452 537 0.83 # 4884 # 8120 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_7 - 332 IstB_IS21 PF01695.12 178 3.1e-05 16.5 0.0 1 1 4.5e-07 5e-05 15.8 0.0 44 73 155 184 127 200 0.82 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 238 3HCDH_N PF02737.13 180 0.0017 11.1 2.0 1 2 0.00064 0.035 6.8 0.1 68 118 33 83 18 86 0.84 # 8077 # 8790 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_13 - 238 3HCDH_N PF02737.13 180 0.0017 11.1 2.0 2 2 0.005 0.28 3.8 0.3 42 80 144 180 114 210 0.69 # 8077 # 8790 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 3_4 - 562 3HCDH_N PF02737.13 180 0.018 7.7 6.6 1 2 0.017 0.95 2.1 2.8 1 30 100 129 100 133 0.93 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 3HCDH_N PF02737.13 180 0.018 7.7 6.6 2 2 0.0006 0.033 6.9 0.1 2 36 273 307 272 359 0.75 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 GIDA PF01134.17 392 2.9e-06 19.4 5.3 1 2 2.6e-08 2.9e-06 19.4 5.3 1 53 100 154 100 290 0.87 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 GIDA PF01134.17 392 2.9e-06 19.4 5.3 2 2 0.01 1.1 1.0 0.3 349 385 390 426 376 430 0.79 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_10 - 1079 UvrD_C_2 PF13538.1 104 2.7e-16 52.7 0.1 1 1 1e-17 1.1e-15 50.7 0.1 2 102 797 896 796 898 0.76 # 4884 # 8120 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_4 - 562 Pyr_redox_2 PF07992.9 201 7.8e-43 139.7 0.0 1 1 1.6e-44 1.7e-42 138.6 0.0 1 199 100 407 100 409 0.96 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_7 - 332 AAA_2 PF07724.9 171 6.7e-06 19.1 0.0 1 1 1.1e-07 1.2e-05 18.3 0.0 3 54 158 204 156 213 0.89 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_11 - 510 DUF87 PF01935.12 229 1.2e-07 24.8 0.0 1 1 3.4e-09 1.9e-07 24.2 0.0 10 68 116 170 109 262 0.85 # 8120 # 9649 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_7 - 332 DUF87 PF01935.12 229 2.9e-06 20.2 0.0 1 1 9.7e-08 5.3e-06 19.4 0.0 9 61 144 195 138 196 0.78 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_7 - 332 AAA_22 PF13401.1 131 3.4e-07 23.5 0.0 1 1 2.1e-08 7.6e-07 22.4 0.0 3 45 157 193 153 238 0.75 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_14 - 867 AAA_22 PF13401.1 131 0.0001 15.5 0.1 1 2 0.092 3.4 0.9 0.0 94 114 153 172 75 196 0.83 # 8808 # 11408 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_14 - 867 AAA_22 PF13401.1 131 0.0001 15.5 0.1 2 2 6.9e-05 0.0025 11.0 0.0 5 28 492 515 489 572 0.87 # 8808 # 11408 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 3_10 - 1079 AAA_22 PF13401.1 131 0.00071 12.8 0.2 1 1 0.00022 0.0082 9.3 0.2 4 125 494 598 490 603 0.81 # 4884 # 8120 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_19 - 478 DNA_methylase PF00145.12 335 2.4e-79 259.8 0.0 1 1 4.4e-81 4.9e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 12989 # 14422 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.482 3_4 - 562 Trp_halogenase PF04820.9 454 0.0049 8.5 3.3 1 1 8.1e-05 0.0089 7.6 3.3 1 47 100 143 100 151 0.76 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 NAD_binding_7 PF13241.1 103 4.2e-06 20.0 1.2 1 2 1.9e-05 0.002 11.4 0.2 9 38 100 129 96 164 0.90 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 NAD_binding_7 PF13241.1 103 4.2e-06 20.0 1.2 2 2 0.00049 0.054 6.9 0.1 8 45 271 314 264 382 0.66 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_14 - 867 AAA_17 PF13207.1 121 0.00029 14.7 1.3 1 1 0.00021 0.0077 10.1 0.0 3 21 495 513 494 574 0.79 # 8808 # 11408 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_7 - 332 AAA_17 PF13207.1 121 0.00046 14.1 0.1 1 1 3e-05 0.0011 12.9 0.1 2 40 161 195 160 226 0.75 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_11 - 510 AAA_17 PF13207.1 121 0.00059 13.7 0.1 1 1 6.7e-05 0.0025 11.7 0.0 4 42 131 191 129 260 0.58 # 8120 # 9649 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_7 - 332 MobB PF03205.9 140 9.8e-06 18.4 1.9 1 1 1.5e-07 1.6e-05 17.6 0.3 2 39 160 196 159 201 0.83 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_10 - 1079 PhoH PF02562.11 205 3.6e-09 29.2 4.8 1 2 9.6e-07 5.3e-05 15.5 0.4 5 39 478 514 475 536 0.80 # 4884 # 8120 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_10 - 1079 PhoH PF02562.11 205 3.6e-09 29.2 4.8 2 2 3e-06 0.00017 13.9 0.1 120 162 562 605 553 635 0.82 # 4884 # 8120 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_7 - 332 PhoH PF02562.11 205 0.00032 13.0 0.0 1 1 1e-05 0.00058 12.2 0.0 14 45 153 184 143 219 0.80 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_7 - 332 AAA_7 PF12775.2 272 0.00011 14.3 0.0 1 1 2.4e-06 0.00026 13.1 0.0 25 64 150 189 139 208 0.86 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_7 - 332 T2SE PF00437.15 272 8.5e-52 168.7 0.1 1 1 2.7e-53 9.9e-52 168.5 0.1 3 271 10 311 8 312 0.93 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 4_12 - 156 T2SE PF00437.15 272 1.2e-05 17.4 0.0 1 1 4e-07 1.5e-05 17.1 0.0 114 220 22 141 5 146 0.80 # 11055 # 11522 # 1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.442 3_11 - 510 T2SE PF00437.15 272 0.00096 11.1 0.1 1 1 4.6e-05 0.0017 10.3 0.1 130 149 128 147 103 160 0.84 # 8120 # 9649 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_7 - 332 Zeta_toxin PF06414.7 201 1.7e-06 20.2 0.0 1 1 2.7e-08 3e-06 19.5 0.0 12 51 154 193 145 203 0.86 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_4 - 562 NAD_binding_8 PF13450.1 68 7.6e-05 15.8 1.2 1 1 6.9e-07 7.6e-05 15.8 1.2 1 35 103 136 103 155 0.91 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_7 - 332 Arch_ATPase PF01637.13 234 1e-05 18.3 0.0 1 1 1.8e-07 2e-05 17.4 0.0 15 68 155 205 149 217 0.87 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_7 - 332 AAA_16 PF13191.1 185 8e-07 22.2 0.0 1 1 3.6e-08 2e-06 20.9 0.0 24 58 158 192 149 273 0.83 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_14 - 867 AAA_16 PF13191.1 185 0.00095 12.2 0.1 1 1 0.00013 0.0071 9.4 0.1 25 47 492 514 481 723 0.84 # 8808 # 11408 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_7 - 332 AAA_23 PF13476.1 202 0.0005 13.5 0.0 1 1 2.2e-05 0.00079 12.8 0.0 19 39 158 178 105 184 0.91 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_14 - 867 AAA_23 PF13476.1 202 0.0024 11.2 4.1 1 2 0.071 2.6 1.3 0.3 137 177 132 192 17 239 0.62 # 8808 # 11408 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_14 - 867 AAA_23 PF13476.1 202 0.0024 11.2 4.1 2 2 0.00014 0.0051 10.2 0.0 22 39 494 511 464 522 0.84 # 8808 # 11408 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_13 - 238 AAA_23 PF13476.1 202 0.074 6.4 14.2 1 1 0.00025 0.0092 9.3 1.9 97 196 67 185 58 216 0.60 # 8077 # 8790 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_7 - 332 AAA_18 PF13238.1 129 5.3e-06 19.8 0.0 1 1 2e-07 1.1e-05 18.8 0.0 1 29 161 194 161 212 0.77 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_11 - 510 AAA_18 PF13238.1 129 0.00014 15.2 0.0 1 1 5.2e-06 0.00029 14.2 0.0 3 21 131 149 130 238 0.78 # 8120 # 9649 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 3_14 - 239 CbiA PF01656.18 195 3.1e-06 19.8 0.7 1 2 0.00041 0.045 6.1 0.1 1 19 3 21 3 24 0.89 # 11017 # 11733 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 3_14 - 239 CbiA PF01656.18 195 3.1e-06 19.8 0.7 2 2 6.6e-06 0.00072 12.0 0.0 110 165 89 142 33 168 0.77 # 11017 # 11733 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_7 - 332 KaiC PF06745.8 227 0.00023 13.3 0.0 1 1 3.9e-06 0.00043 12.5 0.0 16 53 155 190 148 226 0.79 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_11 - 510 AAA_14 PF13173.1 128 1.4e-05 18.1 0.0 1 2 4.3e-06 0.00024 14.1 0.0 6 89 130 213 125 234 0.76 # 8120 # 9649 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 3_11 - 510 AAA_14 PF13173.1 128 1.4e-05 18.1 0.0 2 2 0.043 2.4 1.1 0.0 53 81 340 372 300 391 0.57 # 8120 # 9649 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_7 - 332 AAA_14 PF13173.1 128 0.00031 13.7 0.1 1 2 0.0054 0.3 4.1 0.0 63 94 134 163 96 165 0.67 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_7 - 332 AAA_14 PF13173.1 128 0.00031 13.7 0.1 2 2 6.4e-05 0.0035 10.3 0.0 2 34 158 190 157 212 0.80 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_7 - 332 GvpD PF07088.6 484 1.4e-05 16.6 0.0 1 1 1.9e-07 2.1e-05 16.0 0.0 10 85 158 238 150 263 0.73 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_4 - 562 HI0933_like PF03486.9 409 4.8e-09 28.1 5.0 1 2 4.3e-07 4.7e-05 15.0 2.8 2 33 100 131 99 139 0.91 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 HI0933_like PF03486.9 409 4.8e-09 28.1 5.0 2 2 1.7e-06 0.00019 13.0 0.0 83 163 286 362 281 379 0.85 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 FAD_binding_2 PF00890.19 417 1e-06 20.8 5.3 1 3 9.5e-09 1e-06 20.8 5.3 2 32 101 131 100 138 0.91 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 FAD_binding_2 PF00890.19 417 1e-06 20.8 5.3 2 3 0.034 3.7 -0.8 0.2 142 204 311 366 286 382 0.67 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 FAD_binding_2 PF00890.19 417 1e-06 20.8 5.3 3 3 0.0019 0.2 3.4 0.1 373 402 374 405 368 419 0.86 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_10 - 1079 AAA PF00004.24 132 3.7e-06 20.2 0.9 1 1 1.3e-07 1.4e-05 18.3 0.1 4 111 500 600 497 612 0.73 # 4884 # 8120 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_4 - 562 Thi4 PF01946.12 230 0.0003 13.0 0.4 1 1 6.3e-06 0.0007 11.7 0.4 19 70 100 150 95 158 0.88 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_7 - 332 Sigma54_activat PF00158.21 168 9.9e-06 18.1 0.0 1 1 3.3e-07 1.8e-05 17.3 0.0 14 54 150 190 138 208 0.82 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_10 - 1079 Sigma54_activat PF00158.21 168 0.00018 14.0 0.4 1 1 9.5e-06 0.00052 12.5 0.4 8 130 480 600 473 606 0.79 # 4884 # 8120 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_4 - 562 Pyr_redox_3 PF13738.1 203 1.6e-18 60.5 0.1 1 3 1.5e-06 0.00016 14.8 0.0 164 199 95 130 48 134 0.85 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 Pyr_redox_3 PF13738.1 203 1.6e-18 60.5 0.1 2 3 5.8e-09 6.4e-07 22.6 0.0 115 201 219 304 174 306 0.81 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 Pyr_redox_3 PF13738.1 203 1.6e-18 60.5 0.1 3 3 5.6e-08 6.2e-06 19.4 0.0 89 147 317 372 309 431 0.82 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_7 - 332 MMR_HSR1 PF01926.18 116 0.00049 13.1 0.0 1 1 7.3e-06 0.0008 12.4 0.0 2 41 161 205 160 310 0.84 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_7 - 332 DUF258 PF03193.11 161 0.00013 14.2 0.0 1 1 2.2e-06 0.00024 13.3 0.0 29 61 151 184 129 220 0.82 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_11 - 510 TraG-D_C PF12696.2 128 1.5e-21 69.7 0.0 1 1 2.2e-23 2.4e-21 69.0 0.0 1 127 350 471 350 472 0.80 # 8120 # 9649 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_7 - 332 AAA_33 PF13671.1 143 0.00041 13.3 0.0 1 1 6e-06 0.00066 12.6 0.0 2 26 161 188 160 256 0.81 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_4 - 562 XdhC_C PF13478.1 136 0.00091 12.6 1.0 1 2 0.08 8.8 -0.3 0.1 1 29 101 129 101 163 0.86 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 XdhC_C PF13478.1 136 0.00091 12.6 1.0 2 2 6.9e-05 0.0076 9.6 0.1 1 66 273 351 273 371 0.64 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_10 - 1079 AAA_30 PF13604.1 196 2.3e-53 173.7 7.6 1 1 1.5e-54 8.5e-53 171.9 6.4 1 192 477 660 477 663 0.97 # 4884 # 8120 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_7 - 332 AAA_30 PF13604.1 196 3e-05 16.7 0.0 1 2 4.8e-05 0.0026 10.3 0.1 11 51 151 190 147 198 0.80 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_7 - 332 AAA_30 PF13604.1 196 3e-05 16.7 0.0 2 2 0.0039 0.22 4.1 0.0 121 178 204 258 191 272 0.77 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_7 - 332 FtsK_SpoIIIE PF01580.13 205 8.8e-07 21.6 0.0 1 1 4.6e-08 1.7e-06 20.7 0.0 38 64 158 184 139 202 0.84 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_14 - 867 FtsK_SpoIIIE PF01580.13 205 1.4e-05 17.7 0.0 1 1 8.1e-07 3e-05 16.6 0.0 21 62 462 515 445 522 0.82 # 8808 # 11408 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 3_11 - 510 FtsK_SpoIIIE PF01580.13 205 0.00071 12.1 0.0 1 1 3.4e-05 0.0012 11.3 0.0 39 59 124 147 95 153 0.78 # 8120 # 9649 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_7 - 332 ABC_tran PF00005.22 137 1.9e-06 21.2 0.0 1 1 6.3e-08 3.5e-06 20.4 0.0 6 45 153 192 150 216 0.85 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_14 - 867 ABC_tran PF00005.22 137 0.00072 12.9 0.0 1 1 4.4e-05 0.0024 11.2 0.0 14 38 494 518 481 561 0.84 # 8808 # 11408 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 3_4 - 562 K_oxygenase PF13434.1 341 3.7e-06 19.0 0.2 1 3 0.0041 0.45 2.3 0.2 187 223 95 129 86 132 0.74 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 K_oxygenase PF13434.1 341 3.7e-06 19.0 0.2 2 3 2.9e-06 0.00032 12.7 0.0 130 231 217 309 200 339 0.79 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 K_oxygenase PF13434.1 341 3.7e-06 19.0 0.2 3 3 0.022 2.4 -0.0 0.0 139 160 345 366 314 376 0.63 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_7 - 332 ATP-synt_ab PF00006.20 215 0.00062 12.3 0.0 1 1 8.7e-06 0.00096 11.7 0.0 16 62 159 205 151 256 0.87 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_7 - 332 AAA_19 PF13245.1 76 0.00072 12.4 0.1 1 1 2.9e-05 0.0016 11.3 0.1 5 48 153 191 149 222 0.79 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_10 - 1079 AAA_19 PF13245.1 76 0.0026 10.6 3.7 1 2 0.00056 0.031 7.2 0.2 2 75 485 551 484 552 0.75 # 4884 # 8120 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_10 - 1079 AAA_19 PF13245.1 76 0.0026 10.6 3.7 2 2 0.027 1.5 1.7 0.0 17 32 706 721 705 731 0.82 # 4884 # 8120 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_10 - 1079 Helicase_RecD PF05127.9 177 2.2e-05 17.2 4.8 1 2 0.00059 0.065 5.9 0.1 122 146 498 522 481 539 0.76 # 4884 # 8120 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_10 - 1079 Helicase_RecD PF05127.9 177 2.2e-05 17.2 4.8 2 2 8.1e-06 0.00089 12.0 0.1 75 114 548 585 529 653 0.69 # 4884 # 8120 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_14 - 867 AAA_10 PF12846.2 304 8.7e-35 113.6 0.1 1 1 7.7e-36 2.8e-34 111.9 0.0 2 292 492 772 491 780 0.85 # 8808 # 11408 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 3_11 - 510 AAA_10 PF12846.2 304 6e-07 22.2 0.1 1 2 2.1e-05 0.00076 12.0 0.1 3 41 128 166 126 177 0.92 # 8120 # 9649 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 3_11 - 510 AAA_10 PF12846.2 304 6e-07 22.2 0.1 2 2 0.00034 0.012 8.0 0.0 214 286 339 414 307 431 0.75 # 8120 # 9649 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_7 - 332 AAA_10 PF12846.2 304 0.0003 13.3 0.0 1 1 1.3e-05 0.00047 12.7 0.0 3 27 160 184 158 232 0.82 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_4 - 562 FAD_oxidored PF12831.2 428 6.5e-07 21.7 3.8 1 2 5.9e-09 6.5e-07 21.7 3.8 1 41 100 139 100 159 0.83 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 FAD_oxidored PF12831.2 428 6.5e-07 21.7 3.8 2 2 0.01 1.1 1.2 0.0 84 120 305 341 261 364 0.71 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 DAO PF01266.19 358 7.3e-12 37.8 7.5 1 2 1.9e-08 2.1e-06 19.9 1.5 2 35 101 134 100 161 0.85 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 DAO PF01266.19 358 7.3e-12 37.8 7.5 2 2 7.7e-09 8.4e-07 21.1 0.5 151 239 314 400 274 529 0.80 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_7 - 332 ResIII PF04851.10 184 6.8e-06 19.0 0.0 1 1 9.8e-08 1.1e-05 18.4 0.0 22 61 148 196 104 202 0.81 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_10 - 1079 Viral_helicase1 PF01443.13 234 7.5e-15 48.1 5.4 1 2 2.3e-08 2.5e-06 20.2 0.0 3 104 499 605 497 654 0.74 # 4884 # 8120 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_10 - 1079 Viral_helicase1 PF01443.13 234 7.5e-15 48.1 5.4 2 2 3e-11 3.3e-09 29.6 0.5 157 234 818 899 774 899 0.74 # 4884 # 8120 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_7 - 332 DUF2075 PF09848.4 352 0.0001 14.3 0.0 1 1 1.4e-06 0.00015 13.8 0.0 1 32 158 187 158 212 0.76 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_7 - 332 DEAD PF00270.24 169 3.9e-06 19.5 0.0 1 1 6.7e-08 7.4e-06 18.6 0.0 13 68 157 209 144 239 0.79 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_4 - 562 Pyr_redox PF00070.22 80 1e-19 63.8 5.4 1 2 1.2e-06 0.00014 15.4 1.5 2 31 101 130 100 132 0.95 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 Pyr_redox PF00070.22 80 1e-19 63.8 5.4 2 2 3.2e-17 3.5e-15 49.3 0.1 1 72 272 342 272 351 0.91 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 510 TrwB_AAD_bind PF10412.4 386 1.2e-118 389.1 0.0 1 1 3.7e-120 1.4e-118 388.9 0.0 1 385 112 490 112 491 0.95 # 8120 # 9649 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_14 - 867 TrwB_AAD_bind PF10412.4 386 1.2e-06 20.3 2.0 1 2 1.5e-06 5.4e-05 14.9 0.0 16 51 492 527 484 536 0.92 # 8808 # 11408 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_14 - 867 TrwB_AAD_bind PF10412.4 386 1.2e-06 20.3 2.0 2 2 0.0042 0.15 3.5 0.0 102 168 741 806 720 812 0.79 # 8808 # 11408 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_7 - 332 TrwB_AAD_bind PF10412.4 386 1.5e-05 16.7 0.1 1 1 6.4e-07 2.3e-05 16.1 0.1 14 49 157 191 150 202 0.81 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_7 - 332 Sigma54_activ_2 PF14532.1 138 2.7e-06 20.5 0.0 1 1 5.1e-08 5.6e-06 19.5 0.0 14 65 151 202 145 211 0.91 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_11 - 510 T4SS-DNA_transf PF02534.9 469 5.9e-12 37.8 0.0 1 1 7.9e-14 8.7e-12 37.3 0.0 263 426 313 472 297 500 0.74 # 8120 # 9649 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_7 - 332 Pox_A32 PF04665.7 241 0.00011 14.5 0.0 1 1 1.7e-06 0.00019 13.8 0.0 12 46 157 191 150 210 0.85 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_10 - 1079 PIF1 PF05970.9 364 2.2e-06 19.8 0.1 1 2 1.3e-07 1.5e-05 17.1 0.0 2 65 478 537 477 588 0.85 # 4884 # 8120 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_10 - 1079 PIF1 PF05970.9 364 2.2e-06 19.8 0.1 2 2 0.087 9.6 -2.0 0.0 334 363 795 823 782 824 0.84 # 4884 # 8120 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_7 - 332 GTP_EFTU PF00009.22 188 0.00024 13.6 0.2 1 1 3.5e-06 0.00038 12.9 0.2 2 32 157 187 156 205 0.83 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_7 - 332 RNA_helicase PF00910.17 107 2.3e-05 17.6 0.1 1 2 3.7e-06 0.0004 13.6 0.0 1 25 161 185 161 239 0.76 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_7 - 332 RNA_helicase PF00910.17 107 2.3e-05 17.6 0.1 2 2 0.027 3 1.2 0.1 69 100 290 322 281 328 0.78 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_7 - 332 UPF0079 PF02367.12 123 6.8e-06 18.8 0.0 1 1 1.2e-07 1.4e-05 17.8 0.0 9 45 152 188 145 192 0.85 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_4 - 562 AlaDh_PNT_C PF01262.16 168 9.4e-07 21.6 2.3 1 2 3.9e-06 0.00043 12.9 0.3 16 50 94 128 80 131 0.87 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 562 AlaDh_PNT_C PF01262.16 168 9.4e-07 21.6 2.3 2 2 0.00012 0.013 8.1 0.1 19 60 269 310 260 341 0.84 # 1053 # 2738 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_7 - 332 Myosin_head PF00063.16 689 0.00017 12.7 0.0 1 1 2.2e-06 0.00025 12.2 0.0 84 110 157 183 147 208 0.90 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_7 - 332 NACHT PF05729.7 166 9.8e-05 15.1 0.0 1 1 1.9e-06 0.00021 14.0 0.0 1 27 159 185 159 188 0.90 # 2777 # 3772 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_10 - 1079 Herpes_Helicase PF02689.9 819 2.4e-05 15.3 0.0 1 2 0.0014 0.15 2.7 0.0 173 208 539 574 515 584 0.81 # 4884 # 8120 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_10 - 1079 Herpes_Helicase PF02689.9 819 2.4e-05 15.3 0.0 2 2 9.3e-06 0.001 9.9 0.0 739 782 850 894 831 914 0.80 # 4884 # 8120 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fbf47300-0879-4aee-9d2f-16caa9dc194e # Target file: checkm_output/bins/pm1993/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1993/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fbf47300-0879-4aee-9d2f-16caa9dc194e checkm_output/bins/pm1993/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:33 2020 # [ok]