# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_50 - 188 Methyltransf_12 PF08242.7 99 1.4e-05 18.3 0.0 1 1 2.9e-07 2.4e-05 17.5 0.0 1 99 55 144 55 144 0.83 # 43495 # 44058 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_38 - 228 UPF0020 PF01170.13 180 3.2e-06 19.5 0.0 1 2 8.1e-05 0.0069 8.6 0.0 102 123 16 37 2 89 0.68 # 35754 # 36437 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_38 - 228 UPF0020 PF01170.13 180 3.2e-06 19.5 0.0 2 2 6.3e-05 0.0054 9.0 0.0 28 54 163 189 158 220 0.67 # 35754 # 36437 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_50 - 188 RrnaAD PF00398.15 262 2.7e-09 29.0 0.0 1 1 4.1e-11 3.5e-09 28.7 0.0 9 113 29 128 24 148 0.89 # 43495 # 44058 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_11 - 260 IstB_IS21 PF01695.12 178 3.9e-73 237.3 0.1 1 2 0.049 4.2 -0.6 0.0 64 97 25 57 24 61 0.64 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_11 - 260 IstB_IS21 PF01695.12 178 3.9e-73 237.3 0.1 2 2 9.8e-75 8.3e-73 236.2 0.1 1 178 56 235 56 235 0.98 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 3_1 - 180 SSB PF00436.20 104 3e-41 132.2 0.3 1 1 4.5e-43 3.8e-41 131.9 0.3 1 101 6 109 6 112 0.96 # 266 # 805 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.591 1_50 - 188 Methyltransf_18 PF12847.2 112 5.4e-11 35.8 0.0 1 1 1.3e-12 1.1e-10 34.7 0.0 4 109 53 146 50 148 0.89 # 43495 # 44058 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_1 - 1757 UvrD_C_2 PF13538.1 104 2.2e-07 23.7 0.6 1 2 0.013 1.1 2.1 0.0 6 44 1227 1265 1223 1294 0.75 # 1 # 5271 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_1 - 1757 UvrD_C_2 PF13538.1 104 2.2e-07 23.7 0.6 2 2 8.6e-08 7.3e-06 18.8 0.1 3 102 1341 1444 1339 1446 0.77 # 1 # 5271 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 2_9 - 876 DUF87 PF01935.12 229 9.7e-08 24.7 0.0 1 1 6.5e-09 2.8e-07 23.2 0.0 26 222 482 669 468 676 0.77 # 4434 # 7061 # 1 # ID=2_9;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 2_5 - 107 DUF87 PF01935.12 229 0.0004 12.9 0.0 1 1 1.4e-05 0.00061 12.3 0.0 25 50 74 99 72 103 0.91 # 2842 # 3162 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_11 - 260 AAA_22 PF13401.1 131 1.3e-06 21.3 0.2 1 2 8.9e-05 0.0019 11.0 0.0 5 21 103 119 99 131 0.83 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_11 - 260 AAA_22 PF13401.1 131 1.3e-06 21.3 0.2 2 2 0.0015 0.031 7.1 0.0 88 103 154 181 126 203 0.66 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_27 - 894 AAA_22 PF13401.1 131 5e-05 16.1 0.6 1 1 6.5e-05 0.0014 11.5 0.0 4 47 303 351 298 382 0.78 # 24692 # 27373 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 2_13 - 154 AAA_22 PF13401.1 131 0.00065 12.5 0.1 1 1 5.8e-05 0.0012 11.7 0.1 7 94 16 109 13 127 0.77 # 9088 # 9549 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.377 2_5 - 107 AAA_22 PF13401.1 131 0.00072 12.4 0.0 1 1 6.6e-05 0.0014 11.5 0.0 3 27 71 95 66 103 0.86 # 2842 # 3162 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_38 - 228 Methyltransf_11 PF08241.7 95 0.00054 13.2 0.0 1 2 0.0024 0.21 4.9 0.0 78 93 53 68 48 70 0.84 # 35754 # 36437 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_38 - 228 Methyltransf_11 PF08241.7 95 0.00054 13.2 0.0 2 2 0.0014 0.12 5.7 0.0 5 54 172 220 168 226 0.82 # 35754 # 36437 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_8 - 87 Rad60-SLD PF11976.3 72 9.1e-05 14.8 0.1 1 1 1.5e-06 0.00013 14.3 0.1 12 39 41 68 33 77 0.83 # 8829 # 9089 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_38 - 228 N6_N4_Mtase PF01555.13 231 6.3e-37 119.9 0.0 1 1 3.3e-36 2.8e-34 111.2 0.0 1 228 21 200 21 203 0.89 # 35754 # 36437 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 2_27 - 738 AAA_17 PF13207.1 121 0.00028 14.4 0.0 1 1 1e-05 0.00085 12.9 0.0 3 27 189 217 187 284 0.70 # 20811 # 23024 # 1 # ID=2_27;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_27 - 894 AAA_21 PF13304.1 303 2.1e-07 23.8 0.1 1 2 0.00095 0.081 5.5 0.1 3 238 307 506 305 521 0.59 # 24692 # 27373 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_27 - 894 AAA_21 PF13304.1 303 2.1e-07 23.8 0.1 2 2 1.7e-06 0.00015 14.5 0.0 248 302 774 827 678 829 0.76 # 24692 # 27373 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 2_9 - 876 MobB PF03205.9 140 0.00022 13.7 0.2 1 2 2.7e-05 0.0023 10.3 0.0 4 37 483 515 481 523 0.79 # 4434 # 7061 # 1 # ID=2_9;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 2_9 - 876 MobB PF03205.9 140 0.00022 13.7 0.2 2 2 0.034 2.9 0.3 0.0 25 64 695 732 690 744 0.86 # 4434 # 7061 # 1 # ID=2_9;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_11 - 260 PhoH PF02562.11 205 8.9e-08 24.2 0.1 1 1 3.6e-09 3e-07 22.5 0.0 11 48 94 131 83 159 0.83 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_11 - 260 AFG1_ATPase PF03969.11 362 6.1e-05 14.6 0.2 1 1 2.8e-06 0.00024 12.6 0.2 63 216 103 254 43 259 0.72 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_5 - 107 T2SE PF00437.15 272 0.00049 11.7 0.0 1 1 8.9e-06 0.00076 11.1 0.0 107 154 54 98 29 103 0.79 # 2842 # 3162 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 2_5 - 107 Zeta_toxin PF06414.7 201 0.0011 10.8 0.1 1 1 1.7e-05 0.0014 10.4 0.1 14 39 70 95 59 102 0.80 # 2842 # 3162 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_27 - 894 SMC_N PF02463.14 220 1.5e-10 33.3 0.2 1 2 6.1e-06 0.00052 11.9 0.0 16 49 295 328 289 359 0.83 # 24692 # 27373 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_27 - 894 SMC_N PF02463.14 220 1.5e-10 33.3 0.2 2 2 3.7e-08 3.1e-06 19.2 0.1 135 213 735 838 370 845 0.73 # 24692 # 27373 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 2_13 - 154 Arch_ATPase PF01637.13 234 8.2e-05 15.0 0.4 1 1 3.4e-06 0.00014 14.2 0.4 23 125 16 109 7 119 0.69 # 9088 # 9549 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.377 1_11 - 260 Arch_ATPase PF01637.13 234 0.0008 11.8 0.1 1 1 6.9e-05 0.0029 9.9 0.0 8 37 90 119 87 140 0.79 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_27 - 738 AAA_16 PF13191.1 185 3.8e-06 19.7 0.0 1 1 8.1e-07 1.7e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 20811 # 23024 # 1 # ID=2_27;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_27 - 894 AAA_16 PF13191.1 185 3.8e-05 16.4 0.5 1 1 4.9e-06 0.0001 15.0 0.4 24 51 303 330 294 526 0.88 # 24692 # 27373 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_11 - 260 AAA_16 PF13191.1 185 5.6e-05 15.9 1.1 1 1 1.2e-05 0.00025 13.7 0.1 21 41 99 119 86 151 0.78 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_5 - 107 AAA_16 PF13191.1 185 0.0002 14.1 0.0 1 1 1.7e-05 0.00036 13.2 0.0 22 51 70 99 60 104 0.90 # 2842 # 3162 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_27 - 894 AAA_23 PF13476.1 202 7e-08 25.7 3.8 1 1 4.3e-09 3.6e-07 23.3 3.8 11 175 288 584 285 639 0.50 # 24692 # 27373 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_27 - 894 AAA_18 PF13238.1 129 0.00024 14.1 0.6 1 3 0.00016 0.013 8.5 0.0 1 39 306 370 306 383 0.79 # 24692 # 27373 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_27 - 894 AAA_18 PF13238.1 129 0.00024 14.1 0.6 2 3 0.026 2.2 1.3 0.1 14 87 386 471 384 494 0.67 # 24692 # 27373 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_27 - 894 AAA_18 PF13238.1 129 0.00024 14.1 0.6 3 3 0.071 6 -0.1 0.0 60 97 796 837 780 866 0.66 # 24692 # 27373 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_27 - 894 AAA_13 PF13166.1 712 0.011 6.8 10.8 1 2 0.0035 0.29 2.1 4.9 291 448 445 595 433 672 0.64 # 24692 # 27373 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_27 - 894 AAA_13 PF13166.1 712 0.011 6.8 10.8 2 2 7.5e-05 0.0064 7.6 0.3 540 572 795 825 786 834 0.84 # 24692 # 27373 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_11 - 260 AAA_14 PF13173.1 128 1e-06 21.4 0.0 1 1 4.5e-08 1.9e-06 20.5 0.0 2 96 102 203 101 221 0.67 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_13 - 154 AAA_14 PF13173.1 128 6.6e-06 18.7 0.1 1 1 1.9e-07 8e-06 18.5 0.1 5 87 16 97 13 135 0.69 # 9088 # 9549 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.377 2_13 - 154 GvpD PF07088.6 484 0.00016 12.7 0.0 1 2 0.052 4.4 -1.9 0.0 11 26 14 29 9 44 0.75 # 9088 # 9549 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.377 2_13 - 154 GvpD PF07088.6 484 0.00016 12.7 0.0 2 2 4.4e-06 0.00038 11.5 0.0 138 181 92 134 82 145 0.86 # 9088 # 9549 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.377 1_27 - 894 AAA_29 PF13555.1 62 6.8e-06 18.3 0.0 1 1 6.3e-07 1.8e-05 16.9 0.0 14 45 296 325 286 335 0.76 # 24692 # 27373 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_11 - 260 AAA_29 PF13555.1 62 0.00063 12.0 0.0 1 1 4.3e-05 0.0012 11.1 0.0 19 59 98 139 89 141 0.72 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_13 - 154 AAA_29 PF13555.1 62 0.00074 11.8 0.0 1 1 4.5e-05 0.0013 11.0 0.0 17 40 8 30 1 35 0.79 # 9088 # 9549 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.377 1_11 - 260 AAA PF00004.24 132 1.6e-07 24.3 0.0 1 1 3.2e-09 2.7e-07 23.5 0.0 1 74 105 180 105 214 0.77 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_11 - 260 Bac_DnaA PF00308.13 219 9.1e-10 31.2 0.0 1 1 1.6e-11 1.3e-09 30.6 0.0 37 136 105 202 75 207 0.85 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_11 - 260 Sigma54_activat PF00158.21 168 0.00012 14.3 0.1 1 1 1.6e-05 0.0007 11.8 0.1 18 53 98 133 82 198 0.72 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_13 - 154 Sigma54_activat PF00158.21 168 0.00014 14.0 0.0 1 2 2.6e-05 0.0011 11.1 0.0 16 62 7 54 1 61 0.79 # 9088 # 9549 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.377 2_13 - 154 Sigma54_activat PF00158.21 168 0.00014 14.0 0.0 2 2 0.037 1.6 0.9 0.0 94 120 71 97 65 107 0.81 # 9088 # 9549 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.377 2_13 - 154 MMR_HSR1 PF01926.18 116 2.2e-05 17.1 0.0 1 1 3.2e-07 2.7e-05 16.8 0.0 2 90 16 111 15 139 0.69 # 9088 # 9549 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.377 1_50 - 188 N6_Mtase PF02384.11 311 0.00013 13.8 0.0 1 2 2.1e-05 0.0018 10.0 0.0 28 62 32 66 21 75 0.89 # 43495 # 44058 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_50 - 188 N6_Mtase PF02384.11 311 0.00013 13.8 0.0 2 2 0.014 1.2 0.8 0.0 127 137 114 124 102 134 0.82 # 43495 # 44058 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_11 - 260 DUF258 PF03193.11 161 1.1e-05 17.3 0.0 1 1 3.9e-07 1.7e-05 16.8 0.0 21 78 88 157 70 192 0.71 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_27 - 894 DUF258 PF03193.11 161 0.00056 11.8 0.0 1 1 2.6e-05 0.0011 10.8 0.0 22 59 290 327 273 357 0.82 # 24692 # 27373 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 2_27 - 738 TraG-D_C PF12696.2 128 6.6e-21 67.2 0.0 1 1 1.4e-22 1.2e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 20811 # 23024 # 1 # ID=2_27;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_11 - 260 NTPase_1 PF03266.10 168 0.0002 13.8 0.1 1 2 0.0016 0.14 4.5 0.1 2 30 105 133 104 153 0.83 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_11 - 260 NTPase_1 PF03266.10 168 0.0002 13.8 0.1 2 2 0.00025 0.021 7.2 0.0 88 112 157 181 144 204 0.72 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_50 - 188 Methyltransf_26 PF13659.1 117 7.8e-14 44.4 0.1 1 1 3.3e-15 1.4e-13 43.6 0.1 2 114 52 147 51 150 0.90 # 43495 # 44058 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_38 - 228 Methyltransf_26 PF13659.1 117 1.3e-13 43.8 0.1 1 2 6.9e-09 2.9e-07 23.2 0.0 53 114 3 71 2 74 0.78 # 35754 # 36437 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_38 - 228 Methyltransf_26 PF13659.1 117 1.3e-13 43.8 0.1 2 2 2e-07 8.7e-06 18.5 0.0 4 44 167 206 164 222 0.82 # 35754 # 36437 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_1 - 1757 AAA_30 PF13604.1 196 3.1e-44 143.6 13.8 1 3 0.083 3.5 -0.2 0.0 41 86 223 269 219 281 0.81 # 1 # 5271 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_1 - 1757 AAA_30 PF13604.1 196 3.1e-44 143.6 13.8 2 3 1.9e-05 0.0008 11.7 3.8 7 147 420 552 416 562 0.84 # 1 # 5271 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_1 - 1757 AAA_30 PF13604.1 196 3.1e-44 143.6 13.8 3 3 1.9e-43 8e-42 135.7 1.1 1 186 968 1156 968 1160 0.94 # 1 # 5271 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 2_27 - 738 AAA_30 PF13604.1 196 0.00053 12.3 0.0 1 1 2.6e-05 0.0011 11.2 0.0 21 57 188 224 180 230 0.85 # 20811 # 23024 # 1 # ID=2_27;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_5 - 107 FtsK_SpoIIIE PF01580.13 205 1e-06 21.0 0.0 1 1 3e-08 1.3e-06 20.7 0.0 9 66 41 100 34 103 0.81 # 2842 # 3162 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 2_9 - 876 FtsK_SpoIIIE PF01580.13 205 3.5e-06 19.3 0.2 1 2 4.1e-06 0.00017 13.7 0.0 39 63 476 504 463 507 0.84 # 4434 # 7061 # 1 # ID=2_9;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 2_9 - 876 FtsK_SpoIIIE PF01580.13 205 3.5e-06 19.3 0.2 2 2 0.0077 0.33 3.0 0.1 75 167 530 626 529 632 0.85 # 4434 # 7061 # 1 # ID=2_9;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_50 - 188 MTS PF05175.9 170 9.8e-09 27.5 0.0 1 1 1.6e-10 1.4e-08 27.0 0.0 31 141 50 149 41 166 0.84 # 43495 # 44058 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_50 - 188 Methyltrans_SAM PF10672.4 286 0.00074 11.0 0.0 1 1 1.2e-05 0.001 10.6 0.0 196 261 113 173 99 180 0.79 # 43495 # 44058 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_27 - 894 ABC_tran PF00005.22 137 2.6e-05 17.2 2.2 1 1 4.4e-05 0.0019 11.2 3.5 12 94 304 415 294 607 0.81 # 24692 # 27373 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_11 - 260 ABC_tran PF00005.22 137 0.00012 15.0 0.3 1 1 2.4e-05 0.001 12.1 0.0 8 30 99 121 93 136 0.86 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_38 - 228 Cons_hypoth95 PF03602.10 183 6e-06 18.4 0.0 1 2 0.00022 0.018 7.0 0.0 112 146 18 54 2 82 0.64 # 35754 # 36437 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_38 - 228 Cons_hypoth95 PF03602.10 183 6e-06 18.4 0.0 2 2 3.9e-05 0.0033 9.5 0.0 41 62 162 183 145 219 0.78 # 35754 # 36437 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_11 - 260 RuvB_N PF05496.7 234 0.00031 12.5 0.0 1 1 6.5e-06 0.00055 11.7 0.0 50 119 102 182 92 190 0.65 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_1 - 1757 AAA_19 PF13245.1 76 8e-08 24.7 1.4 1 1 8.9e-09 3.8e-07 22.5 0.3 7 76 981 1047 974 1047 0.74 # 1 # 5271 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_11 - 260 AAA_19 PF13245.1 76 0.00036 13.0 0.0 1 1 2.1e-05 0.0009 11.7 0.0 10 37 103 129 96 154 0.81 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_9 - 876 AAA_10 PF12846.2 304 3.2e-49 160.6 0.0 1 1 2.6e-50 5.6e-49 159.8 0.0 1 294 479 768 479 774 0.88 # 4434 # 7061 # 1 # ID=2_9;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 2_27 - 738 AAA_10 PF12846.2 304 1.2e-10 34.0 0.0 1 1 9.9e-11 2.1e-09 29.8 0.0 3 296 187 494 186 500 0.69 # 20811 # 23024 # 1 # ID=2_27;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_11 - 260 AAA_10 PF12846.2 304 6.7e-06 18.3 0.7 1 2 3.8e-06 8.1e-05 14.8 0.1 1 33 102 134 102 171 0.89 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_11 - 260 AAA_10 PF12846.2 304 6.7e-06 18.3 0.7 2 2 0.097 2.1 0.3 0.0 202 247 142 192 134 202 0.68 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_5 - 107 AAA_10 PF12846.2 304 1.3e-05 17.4 0.0 1 2 0.0081 0.17 3.9 0.0 273 290 25 42 9 55 0.80 # 2842 # 3162 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 2_5 - 107 AAA_10 PF12846.2 304 1.3e-05 17.4 0.0 2 2 3e-05 0.00065 11.8 0.0 2 24 73 95 72 100 0.87 # 2842 # 3162 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_11 - 260 ResIII PF04851.10 184 0.00031 13.3 0.0 1 2 6.9e-05 0.0058 9.1 0.0 8 50 89 127 49 135 0.78 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_11 - 260 ResIII PF04851.10 184 0.00031 13.3 0.0 2 2 0.0088 0.74 2.3 0.0 112 163 131 181 127 202 0.72 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_50 - 188 Methyltransf_31 PF13847.1 152 1.3e-06 20.7 0.0 1 1 1.9e-08 1.7e-06 20.4 0.0 5 119 52 162 48 183 0.83 # 43495 # 44058 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_27 - 738 TrwB_AAD_bind PF10412.4 386 1.9e-150 493.3 0.0 1 1 8.4e-152 2.4e-150 493.1 0.0 2 386 172 561 171 561 0.99 # 20811 # 23024 # 1 # ID=2_27;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_9 - 876 TrwB_AAD_bind PF10412.4 386 3.4e-07 21.8 0.1 1 2 7.2e-08 2e-06 19.2 0.0 15 53 479 517 470 547 0.80 # 4434 # 7061 # 1 # ID=2_9;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 2_9 - 876 TrwB_AAD_bind PF10412.4 386 3.4e-07 21.8 0.1 2 2 0.061 1.7 -0.3 0.0 261 317 713 769 684 772 0.92 # 4434 # 7061 # 1 # ID=2_9;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 2_5 - 107 TrwB_AAD_bind PF10412.4 386 0.00012 13.4 0.0 1 2 0.046 1.3 0.1 0.0 294 336 24 66 17 73 0.76 # 2842 # 3162 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 2_5 - 107 TrwB_AAD_bind PF10412.4 386 0.00012 13.4 0.0 2 2 1e-05 0.0003 12.1 0.0 5 42 62 99 58 103 0.88 # 2842 # 3162 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_1 - 1757 AAA_11 PF13086.1 236 0.00011 14.5 1.7 1 1 3.2e-06 0.00028 13.2 0.0 2 72 969 1036 968 1063 0.82 # 1 # 5271 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 2_13 - 154 Sigma54_activ_2 PF14532.1 138 0.00011 15.0 0.0 1 1 2e-06 0.00017 14.3 0.0 55 109 54 110 3 122 0.68 # 9088 # 9549 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.377 2_27 - 738 T4SS-DNA_transf PF02534.9 469 6.3e-10 30.8 0.0 1 1 4e-11 1.7e-09 29.3 0.0 264 361 382 476 198 500 0.83 # 20811 # 23024 # 1 # ID=2_27;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_9 - 876 T4SS-DNA_transf PF02534.9 469 0.00017 12.8 0.0 1 2 0.0031 0.13 3.3 0.0 105 184 533 606 470 625 0.82 # 4434 # 7061 # 1 # ID=2_9;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 2_9 - 876 T4SS-DNA_transf PF02534.9 469 0.00017 12.8 0.0 2 2 0.00021 0.0091 7.2 0.0 319 378 711 769 662 771 0.90 # 4434 # 7061 # 1 # ID=2_9;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_50 - 188 TIGR00755 TIGR00755 256 3.5e-09 28.6 0.0 1 1 5.6e-11 4.7e-09 28.2 0.0 8 105 29 123 25 134 0.90 # 43495 # 44058 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_38 - 228 MethyltransfD12 PF02086.10 260 0.00049 12.2 0.0 1 2 0.023 2 0.4 0.0 178 188 21 31 13 86 0.85 # 35754 # 36437 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_38 - 228 MethyltransfD12 PF02086.10 260 0.00049 12.2 0.0 2 2 4e-05 0.0034 9.5 0.0 20 46 163 189 148 197 0.78 # 35754 # 36437 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 2_5 - 107 Pox_A32 PF04665.7 241 6.5e-05 14.9 0.0 1 2 0.03 1.3 0.9 0.0 2 29 41 67 40 71 0.77 # 2842 # 3162 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 2_5 - 107 Pox_A32 PF04665.7 241 6.5e-05 14.9 0.0 2 2 5.6e-06 0.00024 13.1 0.0 7 42 66 101 60 104 0.89 # 2842 # 3162 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 2_9 - 876 Pox_A32 PF04665.7 241 0.00077 11.4 0.0 1 1 4.6e-05 0.002 10.1 0.0 7 38 473 504 469 519 0.85 # 4434 # 7061 # 1 # ID=2_9;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_50 - 188 Methyltransf_23 PF13489.1 161 5e-05 15.7 0.0 1 1 7.6e-07 6.5e-05 15.4 0.0 9 120 38 153 27 174 0.78 # 43495 # 44058 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_5 - 107 RNA_helicase PF00910.17 107 0.0001 15.2 0.0 1 1 2.7e-06 0.00023 14.0 0.0 1 29 75 103 75 106 0.91 # 2842 # 3162 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_11 - 260 AAA_25 PF13481.1 194 2.1e-05 16.6 0.0 1 1 8.3e-07 3.5e-05 15.9 0.0 22 58 90 127 71 183 0.79 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_27 - 894 AAA_25 PF13481.1 194 0.00047 12.2 0.0 1 1 2.5e-05 0.001 11.1 0.0 34 95 304 364 282 482 0.83 # 24692 # 27373 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_38 - 228 Methyltransf_15 PF09445.5 164 0.00024 13.4 0.0 1 2 0.012 1.1 1.5 0.0 53 80 4 30 2 34 0.91 # 35754 # 36437 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_38 - 228 Methyltransf_15 PF09445.5 164 0.00024 13.4 0.0 2 2 4.3e-05 0.0037 9.5 0.0 3 31 166 194 164 208 0.86 # 35754 # 36437 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_27 - 894 AAA_28 PF13521.1 163 1.6e-05 17.5 0.0 1 1 2.1e-06 8.8e-05 15.2 0.0 2 29 306 335 305 376 0.76 # 24692 # 27373 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_11 - 260 AAA_28 PF13521.1 163 0.001 11.7 1.8 1 1 5.9e-05 0.0025 10.4 0.2 1 43 104 151 104 172 0.70 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_11 - 260 AAA_5 PF07728.9 139 2.5e-05 16.7 0.3 1 2 3.6e-06 0.00031 13.2 0.2 1 74 104 173 104 180 0.72 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_11 - 260 AAA_5 PF07728.9 139 2.5e-05 16.7 0.3 2 2 0.053 4.5 -0.3 0.0 90 123 225 258 218 259 0.63 # 11178 # 11957 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ccc03e75-c41e-45ba-bfb2-ba7bc845f934 # Target file: checkm_output/bins/pm1992/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1992/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ccc03e75-c41e-45ba-bfb2-ba7bc845f934 checkm_output/bins/pm1992/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:31 2020 # [ok]