# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_54 - 252 Mg_chelatase PF01078.16 207 0.00044 12.3 0.0 1 1 7.5e-06 0.00076 11.6 0.0 22 43 99 120 93 131 0.87 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_87 - 228 UPF0020 PF01170.13 180 1.2e-05 17.9 0.0 1 2 0.00026 0.026 7.0 0.0 103 123 17 37 4 88 0.71 # 79104 # 79787 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_87 - 228 UPF0020 PF01170.13 180 1.2e-05 17.9 0.0 2 2 6.3e-05 0.0064 9.0 0.0 28 54 163 189 158 220 0.67 # 79104 # 79787 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_54 - 252 Rad17 PF03215.10 519 0.00011 13.8 0.0 1 1 3.5e-06 0.00017 13.2 0.0 30 66 86 120 78 139 0.80 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_11 - 503 Rad17 PF03215.10 519 0.0012 10.4 0.0 1 1 3.7e-05 0.0019 9.8 0.0 42 69 226 253 217 264 0.81 # 7888 # 9396 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_54 - 252 IstB_IS21 PF01695.12 178 3.1e-60 195.5 0.0 1 1 4.2e-62 4.2e-60 195.1 0.0 3 178 55 230 53 230 0.99 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_93 - 209 MipZ PF09140.6 261 1.9e-21 69.2 0.5 1 2 1.2e-12 1.2e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_93 - 209 MipZ PF09140.6 261 1.9e-21 69.2 0.5 2 2 1.6e-12 1.6e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_93 - 209 YhjQ PF06564.7 244 2.4e-05 16.7 0.3 1 2 1.8e-06 0.00018 13.8 0.3 4 38 3 37 1 50 0.89 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_93 - 209 YhjQ PF06564.7 244 2.4e-05 16.7 0.3 2 2 0.029 3 0.0 0.0 108 144 69 103 44 113 0.78 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_76 - 176 SSB PF00436.20 104 6.5e-41 131.4 0.4 1 1 8.6e-43 8.7e-41 131.0 0.4 1 101 6 109 6 112 0.96 # 72113 # 72640 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.591 1_59 - 767 DUF87 PF01935.12 229 0.00031 13.5 0.0 1 2 5e-05 0.0025 10.5 0.0 16 40 130 153 120 168 0.80 # 55871 # 58171 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_59 - 767 DUF87 PF01935.12 229 0.00031 13.5 0.0 2 2 0.088 4.5 -0.1 0.0 111 172 640 700 622 726 0.63 # 55871 # 58171 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_24 - 383 DUF87 PF01935.12 229 0.00057 12.6 0.0 1 1 2.1e-05 0.0011 11.8 0.0 28 46 162 180 161 192 0.87 # 19978 # 21126 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_24 - 383 NB-ARC PF00931.17 287 0.00038 12.2 0.0 1 1 9.7e-06 0.00098 10.9 0.0 18 49 156 185 145 192 0.81 # 19978 # 21126 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_54 - 252 AAA_22 PF13401.1 131 3.8e-07 23.3 1.7 1 1 1.7e-07 5.8e-06 19.4 1.5 3 79 98 186 93 203 0.58 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_24 - 383 AAA_22 PF13401.1 131 3.8e-06 20.0 0.0 1 1 2.3e-07 7.7e-06 19.0 0.0 3 48 156 198 153 233 0.77 # 19978 # 21126 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_11 - 503 AAA_22 PF13401.1 131 5.3e-06 19.5 0.0 1 1 3e-07 1e-05 18.6 0.0 4 49 229 281 225 330 0.84 # 7888 # 9396 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_87 - 228 Methyltransf_11 PF08241.7 95 0.00063 13.2 0.0 1 2 0.0024 0.25 4.9 0.0 78 93 53 68 48 70 0.84 # 79104 # 79787 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_87 - 228 Methyltransf_11 PF08241.7 95 0.00063 13.2 0.0 2 2 0.0014 0.14 5.7 0.0 5 54 172 220 168 226 0.82 # 79104 # 79787 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_93 - 209 SRP54 PF00448.17 196 2.5e-07 23.2 0.1 1 1 1.5e-08 1.5e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_54 - 252 DNA_pol3_delta2 PF13177.1 162 0.00015 14.4 0.0 1 2 3.9e-05 0.0039 9.8 0.0 20 64 100 144 84 162 0.81 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 252 DNA_pol3_delta2 PF13177.1 162 0.00015 14.4 0.0 2 2 0.0062 0.62 2.6 0.0 101 138 159 198 150 202 0.75 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_87 - 228 N6_N4_Mtase PF01555.13 231 4.5e-37 120.6 0.0 1 1 1.8e-36 1.8e-34 112.1 0.0 1 228 21 200 21 203 0.91 # 79104 # 79787 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_54 - 252 AAA_17 PF13207.1 121 3.6e-07 24.0 0.0 1 1 3.1e-08 7.9e-07 22.9 0.0 3 54 103 158 101 233 0.65 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_93 - 209 AAA_17 PF13207.1 121 1.6e-05 18.7 0.0 1 1 1.6e-06 4.1e-05 17.3 0.0 9 77 11 84 9 205 0.75 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_11 - 503 AAA_17 PF13207.1 121 4.9e-05 17.1 0.0 1 1 5.5e-06 0.00014 15.6 0.0 1 32 231 264 231 361 0.79 # 7888 # 9396 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_24 - 383 AAA_17 PF13207.1 121 0.00041 14.1 0.0 1 1 3.6e-05 0.00092 13.0 0.0 3 22 161 180 161 245 0.81 # 19978 # 21126 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_93 - 209 MobB PF03205.9 140 5.7e-05 15.8 0.1 1 1 1.6e-06 0.00016 14.3 0.0 10 42 11 41 1 46 0.79 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_93 - 209 ArsA_ATPase PF02374.10 305 4.4e-08 25.4 0.9 1 3 1.2e-09 1.2e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_93 - 209 ArsA_ATPase PF02374.10 305 4.4e-08 25.4 0.9 2 3 0.053 5.4 -1.2 0.0 121 135 69 85 47 86 0.75 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_93 - 209 ArsA_ATPase PF02374.10 305 4.4e-08 25.4 0.9 3 3 0.075 7.6 -1.7 0.0 205 234 132 161 118 202 0.65 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_54 - 252 PhoH PF02562.11 205 6.5e-06 18.4 0.0 1 1 2.9e-07 2.9e-05 16.3 0.0 16 49 96 129 82 141 0.85 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_11 - 503 T2SE PF00437.15 272 2.8e-38 124.2 0.0 1 1 1.3e-39 4.3e-38 123.6 0.0 66 269 161 378 143 381 0.87 # 7888 # 9396 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_24 - 383 T2SE PF00437.15 272 7.7e-35 112.9 0.0 1 1 3.2e-36 1.1e-34 112.5 0.0 111 261 144 292 23 309 0.79 # 19978 # 21126 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_54 - 252 T2SE PF00437.15 272 3.3e-07 22.3 0.0 1 1 1.6e-08 5.3e-07 21.7 0.0 103 150 30 121 8 131 0.72 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_11 - 503 Zeta_toxin PF06414.7 201 0.00086 11.3 0.0 1 1 1.4e-05 0.0015 10.6 0.0 18 39 231 252 216 259 0.79 # 7888 # 9396 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_93 - 209 VirC1 PF07015.6 231 3.4e-09 29.0 0.0 1 1 7.1e-11 7.2e-09 27.9 0.0 3 172 2 164 1 206 0.74 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_93 - 209 Fer4_NifH PF00142.13 273 7.5e-05 14.9 0.2 1 1 2.3e-06 0.00023 13.3 0.0 8 38 9 39 2 46 0.89 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_54 - 252 AAA_16 PF13191.1 185 7.4e-08 25.5 0.8 1 1 3.5e-09 1.2e-07 24.8 0.4 10 111 85 175 76 232 0.73 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_11 - 503 AAA_16 PF13191.1 185 3.3e-05 16.8 0.0 1 1 1.7e-06 5.6e-05 16.1 0.0 13 52 222 263 216 369 0.84 # 7888 # 9396 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_24 - 383 AAA_16 PF13191.1 185 4.4e-05 16.4 0.0 1 1 3e-06 0.0001 15.3 0.0 25 62 158 192 148 338 0.76 # 19978 # 21126 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_24 - 383 AAA_23 PF13476.1 202 2e-05 17.9 0.0 1 1 1e-06 3.4e-05 17.1 0.0 20 46 158 185 144 218 0.81 # 19978 # 21126 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_11 - 503 AAA_23 PF13476.1 202 7.6e-05 16.0 0.0 1 1 4.3e-06 0.00015 15.1 0.0 20 37 230 247 225 262 0.90 # 7888 # 9396 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_54 - 252 AAA_23 PF13476.1 202 0.00021 14.6 0.3 1 1 1.5e-05 0.00051 13.3 0.0 23 39 103 119 90 124 0.89 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 252 AAA_18 PF13238.1 129 4.5e-05 16.7 0.0 1 1 2.7e-06 9e-05 15.7 0.0 2 42 103 145 102 206 0.51 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_24 - 383 AAA_18 PF13238.1 129 0.00011 15.4 0.0 1 1 5.8e-06 0.00019 14.6 0.0 2 38 161 193 161 238 0.71 # 19978 # 21126 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_11 - 503 AAA_18 PF13238.1 129 0.0011 12.2 0.1 1 1 7.9e-05 0.0027 11.0 0.1 1 18 232 249 232 267 0.87 # 7888 # 9396 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_93 - 209 CbiA PF01656.18 195 1.8e-22 72.6 0.0 1 1 3.1e-24 3.1e-22 71.8 0.0 1 158 3 141 3 179 0.75 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_54 - 252 AAA_14 PF13173.1 128 3.4e-06 19.9 0.0 1 1 1.3e-07 6.3e-06 19.1 0.0 2 69 99 168 98 239 0.75 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_11 - 503 AAA_14 PF13173.1 128 0.0011 11.8 0.0 1 1 4.4e-05 0.0022 10.8 0.0 3 30 230 255 228 267 0.86 # 7888 # 9396 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_11 - 503 AAA_29 PF13555.1 62 1.6e-05 17.3 0.0 1 1 1.2e-06 4e-05 16.1 0.0 20 40 227 246 219 255 0.84 # 7888 # 9396 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_24 - 383 AAA_29 PF13555.1 62 2.2e-05 16.9 0.0 1 1 1.6e-06 5.4e-05 15.6 0.0 25 43 159 177 149 185 0.84 # 19978 # 21126 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_54 - 252 AAA_29 PF13555.1 62 0.00012 14.6 0.0 1 1 7.2e-06 0.00024 13.6 0.0 19 42 98 118 89 122 0.78 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 252 AAA PF00004.24 132 3.6e-06 20.2 0.0 1 1 6.5e-08 6.6e-06 19.3 0.0 1 99 102 192 102 201 0.71 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 252 Bac_DnaA PF00308.13 219 6.9e-07 22.0 0.0 1 1 1.1e-08 1.1e-06 21.3 0.0 36 136 101 199 86 206 0.89 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 252 CobU PF02283.11 167 0.00086 11.7 0.0 1 1 2.7e-05 0.0027 10.0 0.0 2 43 103 147 102 151 0.78 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 252 Sigma54_activat PF00158.21 168 2.8e-06 19.8 0.0 1 1 1.3e-07 6.3e-06 18.7 0.0 17 67 94 144 82 151 0.80 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_24 - 383 Sigma54_activat PF00158.21 168 0.00068 12.1 0.0 1 1 2.5e-05 0.0013 11.2 0.0 26 47 161 182 145 193 0.84 # 19978 # 21126 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_54 - 252 DUF258 PF03193.11 161 0.00044 12.4 0.0 1 1 6.5e-06 0.00065 11.8 0.0 34 64 98 136 72 188 0.73 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_59 - 767 TraG-D_C PF12696.2 128 5e-08 25.8 0.2 1 1 5e-10 5e-08 25.8 0.2 1 90 437 525 437 558 0.83 # 55871 # 58171 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_93 - 209 AAA_31 PF13614.1 157 4.3e-06 19.6 0.0 1 2 2.5e-07 2.5e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_93 - 209 AAA_31 PF13614.1 157 4.3e-06 19.6 0.0 2 2 0.055 5.5 -0.2 0.0 109 127 68 86 62 113 0.68 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_11 - 503 AAA_33 PF13671.1 143 0.00061 12.6 0.0 1 1 1.6e-05 0.0016 11.2 0.0 1 19 231 249 231 333 0.71 # 7888 # 9396 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_87 - 228 Methyltransf_26 PF13659.1 117 7e-12 38.4 0.1 1 2 1.5e-07 1.5e-05 17.9 0.0 57 114 7 71 2 74 0.72 # 79104 # 79787 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_87 - 228 Methyltransf_26 PF13659.1 117 7e-12 38.4 0.1 2 2 1e-07 1e-05 18.5 0.0 4 44 167 206 164 222 0.82 # 79104 # 79787 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_11 - 503 AAA_30 PF13604.1 196 6.7e-09 28.5 0.0 1 1 2.5e-10 1.3e-08 27.6 0.0 2 45 213 256 212 263 0.92 # 7888 # 9396 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_54 - 252 AAA_30 PF13604.1 196 0.00012 14.6 0.0 1 1 4.7e-06 0.00024 13.6 0.0 14 119 95 188 81 198 0.78 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 252 FtsK_SpoIIIE PF01580.13 205 0.00011 14.6 0.0 1 1 4.1e-06 0.00021 13.7 0.0 27 65 87 126 74 131 0.78 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_24 - 383 FtsK_SpoIIIE PF01580.13 205 0.00074 11.9 0.0 1 1 2.4e-05 0.0012 11.2 0.0 40 60 159 179 128 231 0.80 # 19978 # 21126 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_35 - 238 AAA_27 PF13514.1 1111 0.00035 11.2 2.7 1 1 4.5e-06 0.00045 10.8 2.7 316 391 97 171 94 182 0.90 # 33103 # 33816 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.591 1_24 - 383 ABC_tran PF00005.22 137 2.2e-05 17.7 0.0 1 1 1.2e-06 4.1e-05 16.8 0.0 15 37 161 183 150 212 0.84 # 19978 # 21126 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_54 - 252 ABC_tran PF00005.22 137 3.7e-05 17.0 0.0 1 1 3e-06 0.0001 15.5 0.0 10 44 98 132 93 237 0.73 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_11 - 503 ABC_tran PF00005.22 137 0.00036 13.8 0.0 1 1 1.8e-05 0.00062 13.0 0.0 12 37 230 255 224 364 0.90 # 7888 # 9396 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_87 - 228 Cons_hypoth95 PF03602.10 183 1.2e-05 17.6 0.0 1 2 0.00039 0.039 6.2 0.0 112 146 18 54 9 81 0.65 # 79104 # 79787 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_87 - 228 Cons_hypoth95 PF03602.10 183 1.2e-05 17.6 0.0 2 2 3.9e-05 0.004 9.5 0.0 41 62 162 183 145 219 0.78 # 79104 # 79787 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_11 - 503 AAA_19 PF13245.1 76 1.1e-06 21.3 0.0 1 1 8.7e-08 2.9e-06 19.9 0.0 1 36 219 255 219 272 0.76 # 7888 # 9396 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_54 - 252 AAA_19 PF13245.1 76 6.5e-05 15.6 0.2 1 1 1e-05 0.00034 13.3 0.0 10 59 100 143 94 155 0.78 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_93 - 209 AAA_19 PF13245.1 76 0.00029 13.5 0.1 1 2 0.00029 0.0097 8.6 0.0 20 48 11 35 9 44 0.84 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_93 - 209 AAA_19 PF13245.1 76 0.00029 13.5 0.1 2 2 0.032 1.1 2.1 0.0 42 63 135 158 118 184 0.76 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_40 - 1015 AAA_10 PF12846.2 304 1.8e-31 102.6 0.0 1 1 3.1e-32 5.2e-31 101.0 0.0 8 303 502 898 498 899 0.92 # 36124 # 39168 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.579 1_59 - 767 AAA_10 PF12846.2 304 8.9e-07 21.5 0.2 1 1 1.1e-07 1.8e-06 20.5 0.2 2 292 137 506 136 516 0.68 # 55871 # 58171 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_24 - 383 AAA_10 PF12846.2 304 2e-05 17.0 0.2 1 2 1.9e-05 0.00033 13.0 0.1 3 22 159 178 157 196 0.87 # 19978 # 21126 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_24 - 383 AAA_10 PF12846.2 304 2e-05 17.0 0.2 2 2 0.031 0.51 2.5 0.0 192 247 288 347 175 350 0.60 # 19978 # 21126 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_93 - 209 AAA_10 PF12846.2 304 0.00016 14.1 0.0 1 1 1.5e-05 0.00025 13.4 0.0 11 39 11 39 3 66 0.90 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_11 - 503 AAA_10 PF12846.2 304 0.00056 12.3 0.0 1 1 5e-05 0.00084 11.7 0.0 4 28 232 256 229 362 0.77 # 7888 # 9396 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_54 - 252 AAA_10 PF12846.2 304 0.00058 12.2 0.0 1 1 5.7e-05 0.00095 11.5 0.0 3 29 101 127 99 173 0.86 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 252 ResIII PF04851.10 184 5.6e-05 15.9 0.0 1 1 1.1e-06 0.00011 14.9 0.0 11 46 86 120 79 148 0.75 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 252 Viral_helicase1 PF01443.13 234 0.00046 12.6 0.0 1 1 7e-06 0.00071 12.0 0.0 2 74 103 172 102 184 0.80 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_11 - 503 DEAD PF00270.24 169 0.0011 11.4 0.0 1 1 1.6e-05 0.0016 10.8 0.0 3 39 216 254 214 340 0.82 # 7888 # 9396 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_54 - 252 DUF815 PF05673.8 250 0.00012 14.0 0.0 1 1 2.1e-06 0.00021 13.1 0.0 53 122 99 175 82 198 0.74 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_63 - 283 Methyltransf_27 PF13708.1 194 2.7e-66 215.7 0.0 1 1 3.5e-68 3.5e-66 215.3 0.0 2 194 85 278 84 278 0.96 # 62111 # 62959 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_59 - 767 TrwB_AAD_bind PF10412.4 386 5.4e-07 21.4 0.2 1 2 0.00021 0.021 6.3 0.0 11 32 132 153 126 164 0.80 # 55871 # 58171 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_59 - 767 TrwB_AAD_bind PF10412.4 386 5.4e-07 21.4 0.2 2 2 2.5e-06 0.00025 12.6 0.1 260 332 452 525 435 578 0.75 # 55871 # 58171 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_11 - 503 AAA_11 PF13086.1 236 0.00052 12.5 0.0 1 1 6.7e-06 0.00068 12.1 0.0 2 41 213 253 212 353 0.86 # 7888 # 9396 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_54 - 252 Sigma54_activ_2 PF14532.1 138 5.8e-09 29.0 0.0 1 1 1.1e-10 1.2e-08 28.1 0.0 19 128 97 223 80 231 0.81 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_87 - 228 MethyltransfD12 PF02086.10 260 0.00043 12.7 0.0 1 2 0.015 1.5 1.0 0.0 175 188 18 31 8 92 0.82 # 79104 # 79787 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_87 - 228 MethyltransfD12 PF02086.10 260 0.00043 12.7 0.0 2 2 4e-05 0.004 9.5 0.0 20 46 163 189 148 197 0.78 # 79104 # 79787 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_54 - 252 RNA_helicase PF00910.17 107 5.5e-06 19.5 0.0 1 1 2.3e-07 1.1e-05 18.5 0.0 2 74 103 186 102 190 0.81 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_24 - 383 RNA_helicase PF00910.17 107 5.6e-05 16.3 0.0 1 1 2.1e-06 0.00011 15.4 0.0 2 33 161 190 160 201 0.82 # 19978 # 21126 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_1 - 215 TIGR00922 TIGR00922 172 0.00022 13.7 0.0 1 1 2.6e-06 0.00027 13.4 0.0 54 104 106 156 59 177 0.87 # 1 # 645 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_24 - 383 NACHT PF05729.7 166 0.00056 12.5 0.0 1 1 1.4e-05 0.0014 11.2 0.0 4 30 161 187 159 193 0.82 # 19978 # 21126 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_24 - 383 AAA_25 PF13481.1 194 8.7e-06 18.2 0.0 1 1 5.6e-07 1.4e-05 17.4 0.0 21 55 146 179 127 219 0.78 # 19978 # 21126 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_54 - 252 AAA_25 PF13481.1 194 9.8e-05 14.7 0.1 1 1 1.6e-05 0.00041 12.7 0.1 22 58 88 124 70 197 0.86 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_93 - 209 AAA_25 PF13481.1 194 0.00012 14.4 0.1 1 1 1.2e-05 0.00031 13.1 0.0 42 87 10 44 3 90 0.78 # 84982 # 85608 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_11 - 503 AAA_25 PF13481.1 194 0.00014 14.2 0.0 1 1 1.5e-05 0.00037 12.8 0.0 19 64 214 260 202 276 0.79 # 7888 # 9396 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_87 - 228 Methyltransf_15 PF09445.5 164 0.00078 11.9 0.0 1 2 0.042 4.2 -0.2 0.0 53 79 4 29 2 33 0.90 # 79104 # 79787 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_87 - 228 Methyltransf_15 PF09445.5 164 0.00078 11.9 0.0 2 2 4.3e-05 0.0044 9.5 0.0 3 31 166 194 164 208 0.86 # 79104 # 79787 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_54 - 252 AAA_28 PF13521.1 163 0.00012 15.0 0.0 1 1 2e-06 0.0002 14.3 0.0 3 73 103 180 101 187 0.60 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 252 AAA_5 PF07728.9 139 1.5e-05 17.7 0.1 1 1 4.2e-07 4.2e-05 16.2 0.1 1 93 101 190 101 199 0.75 # 50777 # 51532 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.525 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6d038bee-2950-4560-a153-87745ae34c54 # Target file: checkm_output/bins/pm1989/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1989/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6d038bee-2950-4560-a153-87745ae34c54 checkm_output/bins/pm1989/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:30 2020 # [ok]