# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_53 - 344 Mg_chelatase PF01078.16 207 1.8e-05 18.3 0.0 1 2 0.0019 0.55 3.7 0.0 25 42 78 95 75 101 0.85 # 46826 # 47857 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_53 - 344 Mg_chelatase PF01078.16 207 1.8e-05 18.3 0.0 2 2 7.6e-06 0.0022 11.6 0.0 98 173 137 214 122 226 0.78 # 46826 # 47857 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 2_99 - 274 UPF0020 PF01170.13 180 5.5e-06 20.4 0.0 1 2 2.3e-06 0.00064 13.7 0.0 28 54 24 50 15 100 0.78 # 66978 # 67799 # -1 # ID=2_99;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.536 2_99 - 274 UPF0020 PF01170.13 180 5.5e-06 20.4 0.0 2 2 0.0012 0.34 4.8 0.0 100 117 167 183 150 244 0.73 # 66978 # 67799 # -1 # ID=2_99;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.536 3_20 - 183 NAD_binding_3 PF03447.11 117 0.00076 14.3 0.1 1 1 7.5e-06 0.0021 12.8 0.1 52 93 83 130 21 138 0.76 # 15993 # 16541 # -1 # ID=3_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_22 - 127 Seryl_tRNA_N PF02403.17 108 4.5e-07 24.3 4.5 1 1 2.2e-09 6.4e-07 23.8 4.5 22 97 26 99 12 113 0.85 # 17081 # 17461 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.438 1_115 - 431 MipZ PF09140.6 261 8e-05 16.2 0.7 1 2 0.00016 0.046 7.1 0.1 2 51 140 194 139 219 0.73 # 91670 # 92962 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 1_115 - 431 MipZ PF09140.6 261 8e-05 16.2 0.7 2 2 0.00015 0.041 7.3 0.1 89 135 266 312 251 317 0.83 # 91670 # 92962 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 2_34 - 196 SSB PF00436.20 104 1.8e-42 137.8 1.1 1 1 2.8e-44 2.6e-42 137.3 1.1 1 103 6 112 6 113 0.97 # 22447 # 23034 # -1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 3_9 - 155 SSB PF00436.20 104 1.5e-41 134.9 0.5 1 1 2.5e-43 2.3e-41 134.3 0.5 1 100 6 111 6 115 0.95 # 8361 # 8825 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_49 - 276 SSB PF00436.20 104 2.3e-13 44.3 0.0 1 1 3.7e-15 3.5e-13 43.7 0.0 2 96 3 92 2 99 0.89 # 42328 # 43155 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.435 1_21 - 489 UvrD_C_2 PF13538.1 104 2.1e-10 35.1 0.0 1 1 2.1e-12 5.8e-10 33.7 0.0 21 102 356 463 342 464 0.80 # 15268 # 16734 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.461 2_24 - 689 DEAD_2 PF06733.10 174 3.2e-08 27.6 0.0 1 1 4.6e-10 1.3e-07 25.6 0.0 105 168 199 263 192 268 0.84 # 15183 # 17249 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.485 2_63 - 286 Usp PF00582.21 140 2.3e-26 87.1 0.2 1 2 4.8e-08 1.3e-05 19.7 0.3 8 140 14 161 11 161 0.84 # 38921 # 39778 # 1 # ID=2_63;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.420 2_63 - 286 Usp PF00582.21 140 2.3e-26 87.1 0.2 2 2 9.5e-20 2.7e-17 57.7 0.0 3 140 168 285 167 285 0.78 # 38921 # 39778 # 1 # ID=2_63;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.420 1_30 - 656 DUF87 PF01935.12 229 2.3e-08 28.5 0.0 1 1 2.1e-10 6e-08 27.1 0.0 18 63 150 194 141 246 0.92 # 23995 # 25962 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.465 1_53 - 344 AAA_22 PF13401.1 131 2e-06 22.4 0.0 1 1 4.3e-08 4.1e-06 21.4 0.0 6 108 77 170 74 193 0.81 # 46826 # 47857 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_30 - 656 AAA_22 PF13401.1 131 7.2e-06 20.6 0.0 1 2 8.8e-06 0.00083 13.9 0.0 5 49 156 195 152 231 0.78 # 23995 # 25962 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.465 1_30 - 656 AAA_22 PF13401.1 131 7.2e-06 20.6 0.0 2 2 0.0098 0.93 4.0 0.0 73 108 454 489 427 504 0.76 # 23995 # 25962 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.465 1_79 - 303 AAA_22 PF13401.1 131 0.00028 15.4 1.3 1 1 1.6e-05 0.0015 13.1 0.2 3 25 173 195 169 214 0.86 # 71010 # 71918 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.424 1_53 - 344 AAA_17 PF13207.1 121 9.9e-06 20.8 0.0 1 1 1.7e-07 2.4e-05 19.5 0.0 4 28 80 104 78 167 0.90 # 46826 # 47857 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_30 - 656 AAA_17 PF13207.1 121 0.0021 13.2 0.1 1 1 5.1e-05 0.0073 11.5 0.1 3 18 159 174 158 191 0.91 # 23995 # 25962 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.465 3_28 - 370 ADH_zinc_N_2 PF13602.1 127 1.1e-05 20.7 0.0 1 1 9.8e-08 2.8e-05 19.4 0.0 2 121 231 362 230 363 0.62 # 24036 # 25145 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.537 3_28 - 370 ADH_zinc_N PF00107.21 130 1.4e-22 74.0 0.1 1 1 8.3e-25 2.4e-22 73.3 0.1 1 128 197 330 197 332 0.86 # 24036 # 25145 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.537 1_115 - 431 ArsA_ATPase PF02374.10 305 3.5e-05 17.3 0.1 1 1 3.6e-07 0.0001 15.8 0.0 4 136 142 285 139 288 0.70 # 91670 # 92962 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 1_21 - 489 PhoH PF02562.11 205 4.6e-06 20.4 0.2 1 2 0.00011 0.032 7.8 0.0 8 46 6 42 1 62 0.71 # 15268 # 16734 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.461 1_21 - 489 PhoH PF02562.11 205 4.6e-06 20.4 0.2 2 2 2.1e-05 0.0061 10.2 0.0 122 173 189 238 184 249 0.85 # 15268 # 16734 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.461 1_92 - 205 MCM PF00493.18 331 0.0024 11.0 0.0 1 1 1.3e-05 0.0036 10.5 0.0 53 76 75 98 68 106 0.89 # 79134 # 79748 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_30 - 656 T2SE PF00437.15 272 6.1e-05 16.4 0.0 1 1 4e-07 0.00011 15.5 0.0 129 161 156 188 116 197 0.74 # 23995 # 25962 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.465 1_53 - 344 Zeta_toxin PF06414.7 201 0.0031 11.0 0.0 1 1 2.6e-05 0.0072 9.8 0.0 18 42 77 100 75 108 0.84 # 46826 # 47857 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_115 - 431 Fer4_NifH PF00142.13 273 0.00045 13.8 0.0 1 1 4.2e-06 0.0012 12.4 0.0 8 76 147 221 141 228 0.82 # 91670 # 92962 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 1_53 - 344 AAA_16 PF13191.1 185 0.00056 14.3 0.0 1 1 1e-05 0.00096 13.5 0.0 25 47 76 98 59 124 0.85 # 46826 # 47857 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_79 - 303 AAA_16 PF13191.1 185 0.0023 12.3 0.0 1 1 4.9e-05 0.0047 11.3 0.0 13 41 163 191 155 209 0.78 # 71010 # 71918 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.424 1_92 - 205 AAA_16 PF13191.1 185 0.0032 11.8 0.0 1 1 5.4e-05 0.0051 11.2 0.0 27 45 82 100 62 114 0.82 # 79134 # 79748 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_30 - 656 AAA_18 PF13238.1 129 0.0013 13.4 0.0 1 1 1.2e-05 0.0035 12.1 0.0 2 42 159 192 159 223 0.71 # 23995 # 25962 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.465 3_20 - 183 adh_short PF00106.20 167 2.7e-28 93.3 0.6 1 1 1.3e-30 3.6e-28 92.9 0.6 1 163 11 181 11 182 0.89 # 15993 # 16541 # -1 # ID=3_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_115 - 431 CbiA PF01656.18 195 5.1e-19 62.8 0.0 1 1 3.2e-21 9e-19 62.0 0.0 1 144 141 325 141 364 0.75 # 91670 # 92962 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 1_53 - 344 AAA_14 PF13173.1 128 0.00085 13.6 0.0 1 1 6.3e-06 0.0018 12.6 0.0 4 28 77 105 75 197 0.52 # 46826 # 47857 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_30 - 656 AAA_29 PF13555.1 62 0.00065 13.6 0.2 1 1 5.3e-06 0.0015 12.5 0.2 25 39 157 171 147 176 0.88 # 23995 # 25962 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.465 1_103 - 94 CobA_CobO_BtuR PF02572.10 172 0.00071 13.6 0.0 1 1 2.9e-06 0.00082 13.4 0.0 115 159 2 47 1 58 0.89 # 85559 # 85840 # 1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_53 - 344 AAA PF00004.24 132 3.5e-07 24.9 0.0 1 1 8.1e-09 1.1e-06 23.2 0.0 2 112 79 200 78 206 0.61 # 46826 # 47857 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_79 - 303 AAA PF00004.24 132 0.00013 16.6 1.3 1 1 7.8e-06 0.0011 13.6 1.3 1 130 177 287 177 288 0.79 # 71010 # 71918 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.424 1_21 - 489 UvrD_C PF13361.1 351 2.6e-14 47.8 0.1 1 1 2e-16 5.6e-14 46.7 0.1 270 347 389 465 326 468 0.71 # 15268 # 16734 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.461 3_20 - 183 KR PF08659.5 181 3.7e-13 43.9 0.1 1 1 1.7e-15 4.8e-13 43.5 0.1 3 159 13 176 12 181 0.90 # 15993 # 16541 # -1 # ID=3_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_30 - 656 Sigma54_activat PF00158.21 168 0.0012 12.7 0.0 1 1 1.1e-05 0.0033 11.3 0.0 22 57 155 190 140 199 0.87 # 23995 # 25962 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.465 1_92 - 205 MMR_HSR1 PF01926.18 116 0.0018 12.6 0.0 1 1 1.1e-05 0.003 11.9 0.0 2 20 82 100 81 125 0.83 # 79134 # 79748 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 2_13 - 559 N6_Mtase PF02384.11 311 5.5e-05 16.7 0.0 1 2 0.0068 0.96 2.8 0.0 26 60 397 432 380 435 0.81 # 7444 # 9120 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 2_13 - 559 N6_Mtase PF02384.11 311 5.5e-05 16.7 0.0 2 2 1.1e-05 0.0016 11.9 0.0 86 142 434 494 429 509 0.69 # 7444 # 9120 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 2_90 - 572 N6_Mtase PF02384.11 311 0.0014 12.1 0.1 1 1 7e-05 0.0099 9.3 0.0 115 141 481 511 408 534 0.81 # 60612 # 62327 # -1 # ID=2_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_92 - 205 DUF258 PF03193.11 161 0.00049 13.7 0.0 1 1 2.6e-06 0.00074 13.1 0.0 38 61 82 105 45 117 0.67 # 79134 # 79748 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_30 - 656 TraG-D_C PF12696.2 128 8.7e-10 33.0 0.0 1 1 1.5e-11 2.1e-09 31.7 0.0 2 94 470 562 469 586 0.76 # 23995 # 25962 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.465 1_41 - 829 TraG-D_C PF12696.2 128 0.00022 15.5 0.0 1 1 4e-06 0.00057 14.1 0.0 13 69 682 736 670 766 0.80 # 33398 # 35884 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.453 1_115 - 431 AAA_31 PF13614.1 157 2.6e-06 21.8 0.3 1 3 0.097 28 -1.0 0.0 74 115 14 56 6 61 0.58 # 91670 # 92962 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 1_115 - 431 AAA_31 PF13614.1 157 2.6e-06 21.8 0.3 2 3 0.00034 0.097 7.0 0.0 2 90 140 234 139 249 0.73 # 91670 # 92962 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 1_115 - 431 AAA_31 PF13614.1 157 2.6e-06 21.8 0.3 3 3 1.7e-05 0.0048 11.2 0.0 108 148 266 305 264 308 0.87 # 91670 # 92962 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 2_90 - 572 Methyltransf_26 PF13659.1 117 1.8e-09 32.0 0.0 1 1 5e-11 3.6e-09 31.1 0.0 1 116 434 528 434 529 0.84 # 60612 # 62327 # -1 # ID=2_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 2_13 - 559 Methyltransf_26 PF13659.1 117 2e-09 31.9 0.1 1 1 5.2e-11 3.7e-09 31.0 0.1 2 117 420 515 419 515 0.87 # 7444 # 9120 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 2_99 - 274 Methyltransf_26 PF13659.1 117 5e-08 27.4 0.0 1 1 1.4e-09 9.9e-08 26.4 0.0 1 114 25 220 25 223 0.70 # 66978 # 67799 # -1 # ID=2_99;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.536 2_21 - 276 Methyltransf_26 PF13659.1 117 0.00017 16.0 0.0 1 1 5.1e-06 0.00036 15.0 0.0 2 84 26 186 25 247 0.67 # 13452 # 14279 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.510 3_28 - 370 2-Hacid_dh_C PF02826.14 178 0.002 11.6 0.1 1 1 1.3e-05 0.0036 10.8 0.1 36 73 187 225 176 237 0.82 # 24036 # 25145 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.537 1_21 - 489 AAA_30 PF13604.1 196 0.00019 15.4 0.0 1 2 4.2e-05 0.012 9.6 0.0 4 38 5 35 2 110 0.71 # 15268 # 16734 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.461 1_21 - 489 AAA_30 PF13604.1 196 0.00019 15.4 0.0 2 2 0.0034 0.96 3.3 0.0 114 161 203 252 190 274 0.80 # 15268 # 16734 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.461 1_30 - 656 FtsK_SpoIIIE PF01580.13 205 8.4e-10 32.8 0.1 1 1 2.2e-11 3.1e-09 31.0 0.0 27 84 142 198 116 210 0.78 # 23995 # 25962 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.465 1_41 - 829 FtsK_SpoIIIE PF01580.13 205 0.0012 12.7 0.0 1 1 1.6e-05 0.0022 11.8 0.0 10 79 425 493 418 503 0.80 # 33398 # 35884 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.453 2_13 - 559 MTS PF05175.9 170 8e-05 16.4 0.0 1 1 5.2e-07 0.00015 15.6 0.0 66 153 443 526 413 537 0.80 # 7444 # 9120 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 3_28 - 370 Met_10 PF02475.11 200 0.0019 12.2 0.0 1 1 1.2e-05 0.0034 11.4 0.0 98 143 183 229 178 278 0.85 # 24036 # 25145 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.537 1_53 - 344 ABC_tran PF00005.22 137 0.00044 14.9 0.0 1 1 6.7e-06 0.00095 13.9 0.0 11 38 75 102 68 136 0.81 # 46826 # 47857 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_92 - 205 ABC_tran PF00005.22 137 0.0036 12.0 0.0 1 1 4e-05 0.0057 11.3 0.0 4 30 72 98 70 125 0.88 # 79134 # 79748 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 2_13 - 559 Cons_hypoth95 PF03602.10 183 1.5e-06 22.1 0.0 1 1 4.1e-08 3.9e-06 20.7 0.0 16 138 394 501 388 523 0.82 # 7444 # 9120 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 2_99 - 274 Cons_hypoth95 PF03602.10 183 0.0017 12.1 0.0 1 2 0.014 1.3 2.7 0.0 43 58 25 40 14 94 0.84 # 66978 # 67799 # -1 # ID=2_99;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.536 2_99 - 274 Cons_hypoth95 PF03602.10 183 0.0017 12.1 0.0 2 2 0.00049 0.046 7.5 0.0 107 125 168 183 144 230 0.84 # 66978 # 67799 # -1 # ID=2_99;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.536 2_21 - 276 Cons_hypoth95 PF03602.10 183 0.0028 11.4 0.0 1 1 0.00013 0.012 9.4 0.0 100 128 161 186 143 245 0.74 # 13452 # 14279 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.510 1_41 - 829 AAA_10 PF12846.2 304 5.6e-55 181.2 0.0 1 1 5.6e-57 7.9e-55 180.7 0.0 1 303 456 751 456 752 0.94 # 33398 # 35884 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.453 1_30 - 656 AAA_10 PF12846.2 304 1.2e-18 62.0 0.1 1 1 1.4e-20 2e-18 61.2 0.1 3 302 157 550 155 551 0.65 # 23995 # 25962 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.465 3_20 - 183 adh_short_C2 PF13561.1 241 4e-12 40.7 0.0 1 1 1.7e-14 5e-12 40.4 0.0 6 162 20 181 17 182 0.84 # 15993 # 16541 # -1 # ID=3_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_21 - 489 AAA_12 PF13087.1 200 0.00045 14.0 0.0 1 1 3.4e-06 0.00096 12.9 0.0 102 195 364 464 354 467 0.81 # 15268 # 16734 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.461 1_21 - 489 ResIII PF04851.10 184 2.5e-07 25.1 1.5 1 1 1.4e-09 4.1e-07 24.4 0.1 31 154 21 194 6 195 0.74 # 15268 # 16734 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.461 1_21 - 489 Viral_helicase1 PF01443.13 234 1.1e-06 22.7 0.0 1 4 0.024 6.8 0.5 0.0 6 48 23 66 21 84 0.48 # 15268 # 16734 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.461 1_21 - 489 Viral_helicase1 PF01443.13 234 1.1e-06 22.7 0.0 2 4 0.00028 0.08 6.8 0.0 59 101 183 223 141 248 0.70 # 15268 # 16734 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.461 1_21 - 489 Viral_helicase1 PF01443.13 234 1.1e-06 22.7 0.0 3 4 0.017 4.9 0.9 0.0 61 81 373 392 355 400 0.75 # 15268 # 16734 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.461 1_21 - 489 Viral_helicase1 PF01443.13 234 1.1e-06 22.7 0.0 4 4 5.5e-05 0.016 9.1 0.0 174 232 395 464 385 466 0.74 # 15268 # 16734 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.461 3_20 - 183 Epimerase PF01370.16 236 0.001 12.9 0.9 1 1 9.7e-06 0.0028 11.5 0.9 1 116 13 153 13 181 0.72 # 15993 # 16541 # -1 # ID=3_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 2_24 - 689 DEAD PF00270.24 169 3.5e-07 24.2 0.1 1 2 8.8e-08 8.3e-06 19.8 0.1 17 62 60 104 41 110 0.85 # 15183 # 17249 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.485 2_24 - 689 DEAD PF00270.24 169 3.5e-07 24.2 0.1 2 2 0.039 3.7 1.4 0.0 93 136 212 257 193 275 0.73 # 15183 # 17249 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.485 1_30 - 656 DEAD PF00270.24 169 9.9e-05 16.2 0.0 1 1 2.6e-06 0.00025 15.0 0.0 16 54 157 193 147 348 0.79 # 23995 # 25962 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.465 1_41 - 829 DEAD PF00270.24 169 0.0021 11.9 0.0 1 2 0.0039 0.37 4.6 0.0 4 32 444 474 441 573 0.83 # 33398 # 35884 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.453 1_41 - 829 DEAD PF00270.24 169 0.0021 11.9 0.0 2 2 0.0031 0.3 4.9 0.0 115 151 662 699 636 711 0.75 # 33398 # 35884 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.453 1_53 - 344 DUF815 PF05673.8 250 0.0023 11.2 0.0 1 1 2.2e-05 0.0062 9.8 0.0 56 84 78 106 59 121 0.80 # 46826 # 47857 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_30 - 656 DUF853 PF05872.7 504 0.00012 14.9 0.0 1 2 3.9e-06 0.0011 11.7 0.0 12 82 146 215 137 248 0.77 # 23995 # 25962 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.465 1_30 - 656 DUF853 PF05872.7 504 0.00012 14.9 0.0 2 2 0.01 2.9 0.4 0.0 268 332 472 543 467 551 0.76 # 23995 # 25962 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.465 2_90 - 572 Methyltransf_27 PF13708.1 194 6.8e-56 183.2 0.0 1 2 8.3e-57 1.2e-54 179.2 0.0 2 193 100 297 99 298 0.96 # 60612 # 62327 # -1 # ID=2_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 2_90 - 572 Methyltransf_27 PF13708.1 194 6.8e-56 183.2 0.0 2 2 0.019 2.7 1.8 0.0 85 164 489 566 474 567 0.77 # 60612 # 62327 # -1 # ID=2_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 2_13 - 559 Methyltransf_27 PF13708.1 194 6.1e-41 134.4 0.2 1 1 7e-43 1e-40 133.7 0.2 2 194 83 279 82 279 0.95 # 7444 # 9120 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 1_30 - 656 TrwB_AAD_bind PF10412.4 386 7e-10 32.4 0.1 1 2 2.2e-08 6.2e-06 19.4 0.0 15 53 155 193 145 322 0.64 # 23995 # 25962 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.465 1_30 - 656 TrwB_AAD_bind PF10412.4 386 7e-10 32.4 0.1 2 2 1.3e-05 0.0038 10.2 0.0 243 320 468 545 432 584 0.79 # 23995 # 25962 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.465 1_79 - 303 AAA_11 PF13086.1 236 0.0008 13.4 0.0 1 1 5.4e-06 0.0015 12.4 0.0 12 75 169 282 157 295 0.73 # 71010 # 71918 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.424 1_79 - 303 Sigma54_activ_2 PF14532.1 138 4.2e-06 21.3 0.0 1 1 3.3e-08 9.3e-06 20.1 0.0 15 110 168 270 161 280 0.80 # 71010 # 71918 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.424 2_13 - 559 TIGR00755 TIGR00755 256 6e-05 16.5 0.0 1 1 3.8e-07 0.00011 15.6 0.0 8 105 397 488 391 494 0.91 # 7444 # 9120 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 2_21 - 276 MethyltransfD12 PF02086.10 260 4.3e-56 184.6 0.0 1 1 3.4e-58 4.9e-56 184.4 0.0 1 255 7 241 7 246 0.92 # 13452 # 14279 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.510 2_99 - 274 MethyltransfD12 PF02086.10 260 1.4e-53 176.4 0.0 1 1 1.2e-55 1.7e-53 176.1 0.0 1 249 7 235 7 245 0.94 # 66978 # 67799 # -1 # ID=2_99;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.536 1_53 - 344 RNA_helicase PF00910.17 107 7.8e-05 17.2 0.0 1 1 6e-07 0.00017 16.1 0.0 1 23 78 100 78 119 0.90 # 46826 # 47857 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 3_28 - 370 TrkA_N PF02254.13 116 6.8e-05 17.3 0.0 1 1 3.9e-07 0.00011 16.6 0.0 1 46 190 237 190 279 0.85 # 24036 # 25145 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.537 3_28 - 370 AlaDh_PNT_C PF01262.16 168 0.0014 12.6 0.6 1 1 2.1e-05 0.006 10.5 0.1 15 69 181 237 171 249 0.84 # 24036 # 25145 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.537 1_79 - 303 AAA_24 PF13479.1 213 0.005 10.8 2.2 1 3 0.091 26 -1.4 0.0 109 160 70 121 59 133 0.73 # 71010 # 71918 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.424 1_79 - 303 AAA_24 PF13479.1 213 0.005 10.8 2.2 2 3 9.7e-05 0.028 8.4 0.3 5 23 176 194 172 199 0.83 # 71010 # 71918 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.424 1_79 - 303 AAA_24 PF13479.1 213 0.005 10.8 2.2 3 3 0.029 8.3 0.3 0.0 113 147 247 276 226 294 0.72 # 71010 # 71918 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.424 1_21 - 489 UvrD-helicase PF00580.16 315 3.1e-12 40.7 4.8 1 3 4e-06 0.0011 12.6 0.4 1 60 3 56 3 155 0.83 # 15268 # 16734 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.461 1_21 - 489 UvrD-helicase PF00580.16 315 3.1e-12 40.7 4.8 2 3 1.1e-10 3e-08 27.6 0.0 253 306 183 233 170 239 0.86 # 15268 # 16734 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.461 1_21 - 489 UvrD-helicase PF00580.16 315 3.1e-12 40.7 4.8 3 3 0.028 8.1 -0.0 0.2 181 253 385 472 320 476 0.58 # 15268 # 16734 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.461 2_24 - 689 Helicase_C_2 PF13307.1 167 4e-36 118.9 0.0 1 1 2.7e-38 7.6e-36 117.9 0.0 8 166 524 681 517 682 0.93 # 15183 # 17249 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.485 2_73 - 139 eIF-1a PF01176.14 65 0.0028 11.5 0.0 1 1 1.6e-05 0.0044 10.9 0.0 42 63 65 85 50 87 0.87 # 50002 # 50418 # -1 # ID=2_73;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_53 - 344 AAA_28 PF13521.1 163 0.0012 13.2 0.0 1 1 9.8e-06 0.0028 12.0 0.0 4 27 80 104 78 112 0.88 # 46826 # 47857 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_53 - 344 AAA_5 PF07728.9 139 4.1e-19 63.1 0.0 1 1 6.8e-21 6.4e-19 62.4 0.0 3 125 79 201 77 208 0.96 # 46826 # 47857 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_79 - 303 AAA_5 PF07728.9 139 0.00064 13.8 0.0 1 2 7.4e-05 0.007 10.5 0.0 1 27 176 202 176 211 0.81 # 71010 # 71918 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.424 1_79 - 303 AAA_5 PF07728.9 139 0.00064 13.8 0.0 2 2 0.075 7.1 0.7 0.0 113 131 255 278 218 281 0.66 # 71010 # 71918 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.424 1_92 - 205 AAA_5 PF07728.9 139 0.0015 12.6 0.0 1 1 3e-05 0.0028 11.8 0.0 1 18 81 98 81 117 0.87 # 79134 # 79748 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/40c32e01-6b08-4d6b-a87b-b56f1c7e4ad9 # Target file: checkm_output/bins/pm1967/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1967/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/40c32e01-6b08-4d6b-a87b-b56f1c7e4ad9 checkm_output/bins/pm1967/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:17 2020 # [ok]