# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_49 - 145 SSB PF00436.20 104 2.7e-32 103.4 0.2 1 1 3.8e-34 3.1e-32 103.2 0.2 2 103 7 111 6 112 0.96 # 26156 # 26590 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_58 - 388 DUF87 PF01935.12 229 7.4e-05 15.3 0.0 1 1 1.7e-06 0.00014 14.4 0.0 28 45 157 174 155 191 0.88 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_58 - 388 AAA_22 PF13401.1 131 2.8e-06 20.2 0.0 1 1 1.6e-07 6.8e-06 18.9 0.0 4 29 152 177 149 225 0.83 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_71 - 1017 AAA_22 PF13401.1 131 0.00031 13.5 0.0 1 1 2.4e-05 0.00098 11.9 0.0 8 69 492 557 486 594 0.67 # 43758 # 46808 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_58 - 388 ATP_bind_1 PF03029.12 238 0.00065 11.9 0.0 1 1 1.2e-05 0.001 11.2 0.0 1 26 157 182 157 192 0.84 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_71 - 1017 AAA_17 PF13207.1 121 3.8e-05 17.2 0.0 1 1 2.9e-06 0.00024 14.6 0.0 3 28 492 523 492 587 0.67 # 43758 # 46808 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_58 - 388 AAA_21 PF13304.1 303 0.00068 12.2 0.0 1 1 1.4e-05 0.0012 11.5 0.0 3 39 156 197 154 230 0.72 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_58 - 388 Miro PF08477.8 119 0.00078 12.6 0.0 1 1 2e-05 0.0016 11.6 0.0 4 28 157 186 156 220 0.70 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_58 - 388 MobB PF03205.9 140 0.00047 12.5 0.0 1 1 1.1e-05 0.00089 11.6 0.0 4 25 156 177 154 190 0.86 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_58 - 388 T2SE PF00437.15 272 7.6e-24 76.6 0.0 1 1 2.7e-25 1.1e-23 76.1 0.0 11 268 24 302 15 306 0.79 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_10 - 136 T2SE PF00437.15 272 2.3e-05 16.0 0.4 1 2 0.00024 0.0098 7.4 0.1 128 149 3 24 1 42 0.78 # 5051 # 5458 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_10 - 136 T2SE PF00437.15 272 2.3e-05 16.0 0.4 2 2 0.00018 0.0076 7.7 0.1 134 180 44 93 23 111 0.73 # 5051 # 5458 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_58 - 388 SMC_N PF02463.14 220 0.00096 11.0 0.0 1 1 2e-05 0.0017 10.2 0.0 26 50 154 178 147 198 0.81 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_58 - 388 AAA_16 PF13191.1 185 0.00076 12.1 0.0 1 1 1.8e-05 0.0015 11.2 0.0 27 50 155 178 143 210 0.85 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_58 - 388 AAA_23 PF13476.1 202 1.8e-06 21.1 0.3 1 1 4.9e-08 4.1e-06 19.9 0.3 19 44 152 177 122 195 0.85 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_71 - 1017 AAA_18 PF13238.1 129 4.5e-05 16.4 0.1 1 1 4.2e-06 0.00035 13.6 0.0 2 19 492 509 492 562 0.79 # 43758 # 46808 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_58 - 388 AAA_29 PF13555.1 62 7.3e-06 18.1 0.1 1 1 2.2e-07 1.8e-05 16.9 0.1 26 43 155 172 147 175 0.84 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_58 - 388 Ribosomal_S5 PF00333.15 67 2.7e-05 16.6 0.1 1 2 0.00093 0.077 5.5 0.0 26 45 84 103 77 114 0.83 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_58 - 388 Ribosomal_S5 PF00333.15 67 2.7e-05 16.6 0.1 2 2 0.00012 0.01 8.3 0.0 20 56 241 276 229 278 0.91 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_79 - 696 TraG-D_C PF12696.2 128 0.00011 14.7 0.1 1 1 4.7e-06 0.0002 13.9 0.1 3 94 437 524 435 556 0.78 # 54823 # 56910 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_10 - 136 TraG-D_C PF12696.2 128 0.00018 14.0 0.0 1 1 6.4e-06 0.00027 13.5 0.0 38 65 87 114 62 132 0.85 # 5051 # 5458 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_58 - 388 FtsK_SpoIIIE PF01580.13 205 7.9e-05 14.8 0.0 1 1 2e-06 0.00017 13.7 0.0 41 60 155 174 141 186 0.84 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_58 - 388 ABC_tran PF00005.22 137 0.00011 15.2 0.0 1 1 2.5e-06 0.0002 14.3 0.0 16 33 157 174 149 220 0.82 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_71 - 1017 AAA_19 PF13245.1 76 0.00031 13.2 0.0 1 1 1.2e-05 0.00097 11.6 0.0 14 32 492 509 481 523 0.86 # 43758 # 46808 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_71 - 1017 AAA_10 PF12846.2 304 6.3e-42 136.6 0.0 1 1 4.6e-43 1.3e-41 135.6 0.0 5 297 492 884 489 889 0.94 # 43758 # 46808 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_79 - 696 AAA_10 PF12846.2 304 3e-10 32.6 0.0 1 1 1.6e-11 4.5e-10 32.0 0.0 2 292 134 503 133 514 0.76 # 54823 # 56910 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_58 - 388 AAA_10 PF12846.2 304 2.6e-06 19.6 0.0 1 1 2.3e-07 6.4e-06 18.4 0.0 3 27 154 178 152 196 0.73 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_13 - 212 DUF3584 PF12128.3 1201 9.1e-05 12.5 13.1 1 1 3.6e-07 3e-05 14.1 10.3 405 538 29 164 3 169 0.77 # 6795 # 7430 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_71 - 1017 DUF2075 PF09848.4 352 0.00031 12.4 0.0 1 1 1e-05 0.00087 10.9 0.0 5 22 492 509 489 526 0.84 # 43758 # 46808 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_39 - 287 Methyltransf_27 PF13708.1 194 6.4e-69 224.0 0.0 1 1 1.3e-70 1.1e-68 223.3 0.0 2 194 89 282 88 282 0.98 # 21138 # 21998 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_79 - 696 TrwB_AAD_bind PF10412.4 386 1.5e-06 19.7 0.9 1 2 3.4e-05 0.0014 9.8 0.0 16 36 134 154 125 158 0.88 # 54823 # 56910 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_79 - 696 TrwB_AAD_bind PF10412.4 386 1.5e-06 19.7 0.9 2 2 0.00019 0.0077 7.4 0.1 93 140 235 281 229 303 0.80 # 54823 # 56910 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_10 - 136 TrwB_AAD_bind PF10412.4 386 1.6e-05 16.3 0.0 1 2 0.0088 0.37 1.9 0.1 15 40 3 28 1 50 0.80 # 5051 # 5458 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_10 - 136 TrwB_AAD_bind PF10412.4 386 1.6e-05 16.3 0.0 2 2 5.1e-06 0.00021 12.6 0.0 276 311 82 117 79 127 0.87 # 5051 # 5458 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_58 - 388 GTP_EFTU PF00009.22 188 0.00098 11.2 0.0 1 1 2.1e-05 0.0018 10.4 0.0 8 33 157 182 155 194 0.87 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_58 - 388 RNA_helicase PF00910.17 107 0.0009 12.1 0.0 1 1 2.3e-05 0.0019 11.0 0.0 3 26 157 180 156 206 0.83 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_58 - 388 NACHT PF05729.7 166 0.00032 13.0 0.0 1 1 7.2e-06 0.0006 12.1 0.0 4 28 156 180 154 186 0.83 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_58 - 388 AAA_25 PF13481.1 194 5.9e-06 18.4 0.0 1 1 1.5e-07 1.2e-05 17.4 0.0 24 53 143 172 122 178 0.88 # 32352 # 33515 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_10 - 136 DUF1253 PF06862.7 442 9.4e-06 16.8 0.0 1 1 1.4e-07 1.1e-05 16.6 0.0 400 437 71 108 51 114 0.78 # 5051 # 5458 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/86823d63-01aa-4eaa-8ab7-5e87e4822f9a # Target file: checkm_output/bins/pm1955/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1955/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/86823d63-01aa-4eaa-8ab7-5e87e4822f9a checkm_output/bins/pm1955/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:09 2020 # [ok]