# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 361 Mg_chelatase PF01078.16 207 0.00014 12.6 0.0 1 1 7.2e-06 0.00027 11.6 0.0 15 49 173 207 160 224 0.82 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 IstB_IS21 PF01695.12 178 1.8e-06 19.0 0.0 1 1 8.5e-08 3.2e-06 18.2 0.0 11 67 143 200 134 203 0.74 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_7 - 175 SSB PF00436.20 104 3.2e-45 143.9 0.7 1 1 1.1e-46 4e-45 143.6 0.7 1 103 6 112 6 113 0.97 # 6953 # 7477 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_13 - 361 AAA_22 PF13401.1 131 4.9e-05 15.1 0.0 1 1 2.8e-06 0.00011 14.0 0.0 3 28 179 204 176 235 0.86 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 AAA_17 PF13207.1 121 2.5e-07 23.1 0.0 1 1 1.6e-08 6.2e-07 21.8 0.0 2 32 183 215 182 274 0.74 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 T2SE PF00437.15 272 3.3e-49 158.7 0.0 1 1 1e-50 3.9e-49 158.4 0.0 10 266 33 323 25 329 0.94 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 G-alpha PF00503.15 389 0.00013 12.2 0.0 1 1 4.5e-06 0.00017 11.8 0.0 56 87 168 209 113 232 0.66 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 AAA_23 PF13476.1 202 0.00031 12.6 6.0 1 2 0.019 0.74 1.6 0.0 130 173 126 169 112 180 0.82 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 AAA_23 PF13476.1 202 0.00031 12.6 6.0 2 2 1.9e-05 0.00071 11.4 3.4 22 39 183 200 167 201 0.80 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 AAA_18 PF13238.1 129 8.2e-05 14.5 0.0 1 1 5.4e-06 0.0002 13.2 0.0 1 18 183 200 183 238 0.87 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_5 - 236 CbiA PF01656.18 195 6e-08 23.8 2.4 1 1 3.3e-07 1.3e-05 16.2 2.4 1 165 3 142 3 160 0.72 # 5239 # 5946 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.374 1_13 - 361 AAA_29 PF13555.1 62 3e-05 15.1 0.0 1 1 2e-06 7.5e-05 13.8 0.0 17 46 175 203 164 210 0.78 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 Sigma54_activat PF00158.21 168 5.9e-05 14.1 0.0 1 1 3.1e-06 0.00012 13.1 0.0 15 43 173 201 161 221 0.86 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_11 - 536 TraG-D_C PF12696.2 128 3.5e-26 83.1 0.0 1 1 1.5e-27 5.6e-26 82.5 0.0 1 127 318 441 318 442 0.93 # 10002 # 11609 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_13 - 361 AAA_33 PF13671.1 143 0.0002 12.8 0.0 1 1 1.3e-05 0.00048 11.6 0.0 2 25 183 207 183 250 0.82 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 AAA_30 PF13604.1 196 8.2e-05 13.8 0.0 1 1 4.6e-06 0.00017 12.7 0.0 4 42 166 204 163 213 0.91 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 FtsK_SpoIIIE PF01580.13 205 5.4e-06 17.5 0.0 1 1 2.3e-07 8.6e-06 16.8 0.0 18 58 156 200 140 202 0.70 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_22 - 124 CoA_binding_3 PF13727.1 175 2.9e-05 15.5 0.5 1 1 9.6e-07 3.6e-05 15.2 0.5 18 80 16 83 11 118 0.70 # 21109 # 21480 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.503 1_13 - 361 ABC_tran PF00005.22 137 5.6e-05 15.0 0.0 1 1 3.3e-06 0.00013 13.9 0.0 7 37 176 206 173 252 0.83 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 AAA_19 PF13245.1 76 7.3e-05 14.1 0.0 1 1 4.1e-06 0.00016 13.0 0.0 7 35 177 204 171 227 0.79 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_21 - 836 AAA_10 PF12846.2 304 7.2e-17 53.2 0.0 1 1 6.4e-18 1.2e-16 52.5 0.0 2 297 425 710 424 712 0.88 # 18645 # 21152 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_13 - 361 AAA_10 PF12846.2 304 8.2e-05 13.6 0.1 1 1 8.5e-06 0.00016 12.7 0.1 3 22 182 201 180 205 0.90 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_11 - 536 TrwB_AAD_bind PF10412.4 386 2.1e-17 54.3 0.0 1 1 1.2e-18 4.5e-17 53.2 0.0 204 383 267 460 259 463 0.82 # 10002 # 11609 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_11 - 536 T4SS-DNA_transf PF02534.9 469 4.3e-64 208.2 0.0 1 1 1.5e-65 5.6e-64 207.9 0.0 25 456 32 477 11 484 0.86 # 10002 # 11609 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_13 - 361 Pox_A32 PF04665.7 241 0.00018 12.3 0.0 1 1 7.8e-06 0.0003 11.6 0.0 10 33 177 200 166 216 0.86 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 AAA_24 PF13479.1 213 0.0002 12.5 0.1 1 1 9.1e-06 0.00035 11.7 0.1 2 22 179 199 178 205 0.90 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_27 - 156 TIGR00922 TIGR00922 172 2e-05 15.7 0.0 1 1 7.2e-07 2.8e-05 15.3 0.0 56 110 53 107 4 153 0.83 # 22870 # 23337 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_13 - 361 AAA_28 PF13521.1 163 0.00018 13.0 0.1 1 1 1.9e-05 0.00073 11.1 0.1 1 19 182 200 182 217 0.86 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/08493b53-eadb-4a5b-a6f7-aa83c595a6e3 # Target file: checkm_output/bins/pm1954/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1954/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/08493b53-eadb-4a5b-a6f7-aa83c595a6e3 checkm_output/bins/pm1954/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:08 2020 # [ok]