# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 214 MipZ PF09140.6 261 1.3e-14 45.3 0.4 1 1 1.2e-14 4.4e-13 40.3 0.4 2 129 2 111 1 135 0.85 # 9005 # 9646 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 1_12 - 214 YhjQ PF06564.7 244 0.00032 11.6 1.3 1 2 5.6e-05 0.0021 8.9 0.4 4 38 3 37 1 72 0.78 # 9005 # 9646 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 1_12 - 214 YhjQ PF06564.7 244 0.00032 11.6 1.3 2 2 0.0085 0.31 1.8 0.0 106 145 71 108 51 114 0.76 # 9005 # 9646 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 1_14 - 174 SSB PF00436.20 104 2.2e-13 41.6 0.0 1 1 8e-15 3e-13 41.1 0.0 7 101 17 108 14 111 0.94 # 10140 # 10661 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.573 1_12 - 214 SRP54 PF00448.17 196 0.00053 11.0 0.8 1 1 2.3e-05 0.00084 10.3 0.8 11 97 11 94 2 103 0.75 # 9005 # 9646 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 1_12 - 214 ArsA_ATPase PF02374.10 305 0.00037 11.1 0.1 1 1 1.4e-05 0.00053 10.5 0.1 8 36 8 36 1 40 0.82 # 9005 # 9646 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 1_12 - 214 VirC1 PF07015.6 231 4e-05 14.2 0.1 1 1 1.8e-06 6.5e-05 13.6 0.1 3 186 2 185 1 207 0.63 # 9005 # 9646 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 1_12 - 214 CbiA PF01656.18 195 2.5e-23 73.9 0.0 1 1 9.7e-25 3.6e-23 73.5 0.0 1 194 3 182 3 183 0.79 # 9005 # 9646 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 1_17 - 121 MRP-L47 PF06984.8 87 0.00012 13.5 0.1 1 1 4.1e-06 0.00015 13.2 0.1 26 84 49 108 20 110 0.87 # 12883 # 13245 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 214 AAA_31 PF13614.1 157 4.6e-05 14.9 0.1 1 1 3.3e-06 0.00012 13.5 0.0 2 40 2 40 1 51 0.86 # 9005 # 9646 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 1_12 - 214 AAA_25 PF13481.1 194 2.8e-05 15.1 0.8 1 1 1.2e-06 4.3e-05 14.5 0.8 41 72 9 41 3 142 0.86 # 9005 # 9646 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f613e734-b962-4e63-ae4b-4bfec8beb71d # Target file: checkm_output/bins/pm1948/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1948/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f613e734-b962-4e63-ae4b-4bfec8beb71d checkm_output/bins/pm1948/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:04 2020 # [ok]