# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_27 - 214 MipZ PF09140.6 261 1.4e-14 45.3 0.4 1 1 1.2e-14 4.5e-13 40.3 0.4 2 129 2 111 1 135 0.85 # 17550 # 18191 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 1_27 - 214 YhjQ PF06564.7 244 0.00032 11.6 1.3 1 2 5.6e-05 0.0021 8.9 0.4 4 38 3 37 1 72 0.78 # 17550 # 18191 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 1_27 - 214 YhjQ PF06564.7 244 0.00032 11.6 1.3 2 2 0.0085 0.32 1.8 0.0 106 145 71 108 51 114 0.76 # 17550 # 18191 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 1_25 - 174 SSB PF00436.20 104 2.2e-13 41.6 0.0 1 1 8e-15 3.1e-13 41.1 0.0 7 101 17 108 14 111 0.94 # 16535 # 17056 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.571 1_27 - 214 SRP54 PF00448.17 196 0.00054 11.0 0.8 1 1 2.3e-05 0.00087 10.3 0.8 11 97 11 94 2 103 0.75 # 17550 # 18191 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 1_27 - 214 ArsA_ATPase PF02374.10 305 0.00038 11.1 0.1 1 1 1.4e-05 0.00054 10.5 0.1 8 36 8 36 1 40 0.82 # 17550 # 18191 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 1_27 - 214 VirC1 PF07015.6 231 4.1e-05 14.2 0.1 1 1 1.8e-06 6.7e-05 13.6 0.1 3 186 2 185 1 207 0.63 # 17550 # 18191 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 1_27 - 214 CbiA PF01656.18 195 2.6e-23 73.9 0.0 1 1 1.9e-24 3.7e-23 73.5 0.0 1 194 3 182 3 183 0.79 # 17550 # 18191 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 1_20 - 68 CbiA PF01656.18 195 2.4e-05 15.3 0.5 1 1 1.9e-06 3.6e-05 14.7 0.5 1 20 3 22 3 28 0.94 # 13265 # 13468 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.353 1_22 - 121 MRP-L47 PF06984.8 87 0.00012 13.5 0.1 1 1 4.1e-06 0.00016 13.2 0.1 26 84 49 108 20 110 0.87 # 13951 # 14313 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_27 - 214 AAA_31 PF13614.1 157 4.7e-05 14.9 0.1 1 1 3.3e-06 0.00012 13.5 0.0 2 40 2 40 1 51 0.86 # 17550 # 18191 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 1_27 - 214 AAA_25 PF13481.1 194 2.9e-05 15.1 0.8 1 1 1.2e-06 4.4e-05 14.5 0.8 41 72 9 41 3 142 0.86 # 17550 # 18191 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/66b218d5-9bf1-4db7-ba00-2e0e4d6e855d # Target file: checkm_output/bins/pm1947/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1947/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/66b218d5-9bf1-4db7-ba00-2e0e4d6e855d checkm_output/bins/pm1947/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:04 2020 # [ok]