# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_23 - 186 DUF3584 PF12128.3 1201 0.00015 10.2 9.4 1 1 6.1e-06 0.00017 10.0 9.4 657 759 28 130 4 158 0.64 # 15000 # 15557 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 1_23 - 186 AlaDh_PNT_C PF01262.16 168 0.0014 9.3 5.9 1 2 5.6e-05 0.0016 9.2 4.3 34 101 26 106 24 110 0.80 # 15000 # 15557 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 1_23 - 186 AlaDh_PNT_C PF01262.16 168 0.0014 9.3 5.9 2 2 0.0052 0.15 2.7 2.7 31 101 61 135 60 138 0.76 # 15000 # 15557 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/74ab4eed-fcb1-4dd5-9b94-be179c6ebe35 # Target file: checkm_output/bins/pm1946/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1946/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/74ab4eed-fcb1-4dd5-9b94-be179c6ebe35 checkm_output/bins/pm1946/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:04 2020 # [ok]